Ggra4342.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4342.t1
Unique Name	Ggra4342.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	569

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000898_pilon	contig	tig00000898_pilon:7819..9525 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	70448.A0A090MAV9
PFAMs	Myb_DNA-binding
Max annot lvl	2759\|Eukaryota
Evalue	6.16e-16
EggNOG OGs	2C4RN@1\|root,2RIEW@2759\|Eukaryota
Description	DNA-binding transcription factor activity
COG category	K

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4342	Ggra4342	Gracilaria gracilis GNS1m male	gene	tig00000898_pilon 7819..9525 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4342.t1.start1	Ggra4342.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000898_pilon 7819..7821 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4342.t1.CDS1	Ggra4342.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000898_pilon 7819..9525 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4342.t1.exon1	Ggra4342.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000898_pilon 7819..9525 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4342.t1.stop1	Ggra4342.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000898_pilon 9523..9525 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4342.t1	Ggra4342.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000898_pilon 7819..9525 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000898_pilon:7819..9525+
coding sequence from alignment at tig00000898_pilon:7819..9525+

mRNA sequence

>Ggra4342.t1 ID=Ggra4342.t1|Name=Ggra4342.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=569bp
MCTTAIHSARNPPPRACAAEDKATSHQQRQAASPIHGAAFIVVTLPQTPV
RLHALPFRLHYNRVSPFVARRLPRRHATFVRPDVVSRRSSPFCRIVRRSS
PRSARRMSFQTLAPPRRLRALEPSQRVLAANLPRVPAAAPSVPSSFTHAS
SQPLPSPYALAQSVNRTRAPLLCPTPSNASPGLHHASPHPAAHDAHATVL
DHAVGTQAQPLQYHVPHSSHQVSAPCVTPPHTMSPATPHMQYGMVADTAP
SGTPIPNASTATCTYAPVPTSPAAWSGAPVPPSSIAPQVLPQPQYMPYMR
SAPPSTAYYMYPPVPSQYVPHPAYYAPNYAMSTYATVPQHQQQSVHGTVA
EPQPPHPVATPTISPSQLPIPQSHPAVASQQQQQQQQQQPLMAFPLYVNM
PQYSCYAQPLTPKKRRLQWTPDLHSKFVKAVEQYGIDDAVPKLLLRAMNV
PGLTRENVASHLQKYREGLRKKKQAAHSLSDPVHTNYAAERNGVRREAEH
VDEGLEESRKLDDVSASSSQGVNCESSELSSSEQNSCIRTEGGVHGAEGR
LCLSEQALKKRRLSESPT*

spliced messenger RNA

>Ggra4342.t1 ID=Ggra4342.t1|Name=Ggra4342.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1707bp|location=Sequence derived from alignment at tig00000898_pilon:7819..9525+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCACCACAGCCATTCATTCCGCACGCAACCCGCCTCCCCGCGCGTG
CGCCGCTGAGGACAAAGCTACCAGCCATCAACAGCGCCAAGCCGCCTCCC
CCATCCACGGCGCGGCCTTCATCGTCGTCACATTGCCACAGACTCCCGTC
CGTCTCCATGCACTGCCCTTCCGCCTCCATTACAACCGCGTCTCGCCCTT
CGTTGCTCGTCGCCTTCCCCGCCGTCATGCCACCTTCGTGCGGCCCGACG
TCGTCTCCCGTCGTTCATCGCCGTTCTGTCGGATCGTGCGTCGATCGTCA
CCACGTTCGGCCCGTCGCATGAGCTTCCAGACTCTCGCACCGCCCCGTCG
CCTCCGAGCCCTTGAGCCCTCCCAGCGCGTGCTGGCCGCCAATCTCCCGC
GTGTGCCCGCCGCTGCTCCATCGGTTCCGTCTAGTTTCACACACGCTTCG
TCTCAACCATTGCCTTCTCCTTACGCACTGGCGCAGTCCGTCAATCGGAC
GCGCGCGCCGCTGCTGTGCCCTACGCCGTCGAACGCGTCGCCTGGCTTGC
ACCATGCGTCGCCGCACCCCGCTGCGCACGATGCGCACGCGACGGTACTT
GACCACGCTGTGGGCACGCAGGCGCAGCCGTTGCAGTATCATGTGCCGCA
TTCGTCGCATCAGGTGAGCGCGCCTTGTGTCACACCGCCGCATACCATGT
CACCAGCGACGCCACATATGCAATATGGAATGGTTGCCGATACAGCTCCG
TCTGGCACACCTATTCCCAACGCATCCACCGCGACTTGTACGTACGCACC
TGTGCCCACATCCCCTGCTGCATGGAGCGGAGCGCCCGTTCCGCCGTCTT
CCATCGCTCCGCAAGTGCtgccgcagccacaatacatgccgtacatgcgA
TCCGCCCCTCCTAGCACTGCTTACTACATGTATCCTCCGGTACCGTCTCA
ATATGTTCCGCACCCTGCCTACTATGCGCCCAATTACGCAATGAGTACGT
ATGCGACGGTACCACAGCATCAACAACAATCTGTACATGGCACCGTGGCC
GAACCGCAACCTCCACACCCGGTGGCTACACCTACGATCTCACCTTCTCA
ATTGCCCATTCCCCAATCTCATCCGGCTGTTGCCTCGcaacaacaacaac
aacaacaacaacaacaacCCCTTATGGCATTTCCTTTATATGTTAACATG
CCCCAATACTCATGCTATGCTCAACCACTAACACCGAAGAAACGACGCTT
ACAATGGACCCCCGATCTACACTCAAAGTTCGTCAAGGCTGTAGAACAGT
ACGGAATCGACGATGCTGTACCCAAGCTATTATTGCGTGCCATGAATGTA
CCCGGACTCACACGAGAGAATGTGGCCAGTCATTTACAGAAGTATCGAGA
GGGTTTGAGGAAGAAGAAGCAAGCAGCTCACTCATTGAGCGATCCAGTTC
ACACCAATTATGCTGCTGAGCGAAATGGAGTGCGCAGAGAAGCGGAGCAC
GTGGATGAAGGTCTGGAGGAAAGTCGCAAACTGGACGACGTGAGTGCTTC
GTCATCGCAGGGCGTGAATTGCGAATCGTCTGAATTGAGCAGTTCAGAGC
AGAATTCATGTATCCGGACGGAGGGAGGTGTACATGGGGCAGAAGGACGT
TTATGTTTATCTGAGCAAGCATTGAAGAAGCGGAGATTGTCTGAGTCTCC
GACGTGA

protein sequence of Ggra4342.t1

>Ggra4342.t1 ID=Ggra4342.t1|Name=Ggra4342.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=569bp
MCTTAIHSARNPPPRACAAEDKATSHQQRQAASPIHGAAFIVVTLPQTPV
RLHALPFRLHYNRVSPFVARRLPRRHATFVRPDVVSRRSSPFCRIVRRSS
PRSARRMSFQTLAPPRRLRALEPSQRVLAANLPRVPAAAPSVPSSFTHAS
SQPLPSPYALAQSVNRTRAPLLCPTPSNASPGLHHASPHPAAHDAHATVL
DHAVGTQAQPLQYHVPHSSHQVSAPCVTPPHTMSPATPHMQYGMVADTAP
SGTPIPNASTATCTYAPVPTSPAAWSGAPVPPSSIAPQVLPQPQYMPYMR
SAPPSTAYYMYPPVPSQYVPHPAYYAPNYAMSTYATVPQHQQQSVHGTVA
EPQPPHPVATPTISPSQLPIPQSHPAVASQQQQQQQQQQPLMAFPLYVNM
PQYSCYAQPLTPKKRRLQWTPDLHSKFVKAVEQYGIDDAVPKLLLRAMNV
PGLTRENVASHLQKYREGLRKKKQAAHSLSDPVHTNYAAERNGVRREAEH
VDEGLEESRKLDDVSASSSQGVNCESSELSSSEQNSCIRTEGGVHGAEGR
LCLSEQALKKRRLSESPT*

mRNA from alignment at tig00000898_pilon:7819..9525+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4342.t1 ID=Ggra4342.t1|Name=Ggra4342.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1707bp|location=Sequence derived from alignment at tig00000898_pilon:7819..9525+ (Gracilaria gracilis GNS1m male)
ATGTGCACCACAGCCATTCATTCCGCACGCAACCCGCCTCCCCGCGCGTG
CGCCGCTGAGGACAAAGCTACCAGCCATCAACAGCGCCAAGCCGCCTCCC
CCATCCACGGCGCGGCCTTCATCGTCGTCACATTGCCACAGACTCCCGTC
CGTCTCCATGCACTGCCCTTCCGCCTCCATTACAACCGCGTCTCGCCCTT
CGTTGCTCGTCGCCTTCCCCGCCGTCATGCCACCTTCGTGCGGCCCGACG
TCGTCTCCCGTCGTTCATCGCCGTTCTGTCGGATCGTGCGTCGATCGTCA
CCACGTTCGGCCCGTCGCATGAGCTTCCAGACTCTCGCACCGCCCCGTCG
CCTCCGAGCCCTTGAGCCCTCCCAGCGCGTGCTGGCCGCCAATCTCCCGC
GTGTGCCCGCCGCTGCTCCATCGGTTCCGTCTAGTTTCACACACGCTTCG
TCTCAACCATTGCCTTCTCCTTACGCACTGGCGCAGTCCGTCAATCGGAC
GCGCGCGCCGCTGCTGTGCCCTACGCCGTCGAACGCGTCGCCTGGCTTGC
ACCATGCGTCGCCGCACCCCGCTGCGCACGATGCGCACGCGACGGTACTT
GACCACGCTGTGGGCACGCAGGCGCAGCCGTTGCAGTATCATGTGCCGCA
TTCGTCGCATCAGGTGAGCGCGCCTTGTGTCACACCGCCGCATACCATGT
CACCAGCGACGCCACATATGCAATATGGAATGGTTGCCGATACAGCTCCG
TCTGGCACACCTATTCCCAACGCATCCACCGCGACTTGTACGTACGCACC
TGTGCCCACATCCCCTGCTGCATGGAGCGGAGCGCCCGTTCCGCCGTCTT
CCATCGCTCCGCAAGTGCtgccgcagccacaatacatgccgtacatgcgA
TCCGCCCCTCCTAGCACTGCTTACTACATGTATCCTCCGGTACCGTCTCA
ATATGTTCCGCACCCTGCCTACTATGCGCCCAATTACGCAATGAGTACGT
ATGCGACGGTACCACAGCATCAACAACAATCTGTACATGGCACCGTGGCC
GAACCGCAACCTCCACACCCGGTGGCTACACCTACGATCTCACCTTCTCA
ATTGCCCATTCCCCAATCTCATCCGGCTGTTGCCTCGcaacaacaacaac
aacaacaacaacaacaacCCCTTATGGCATTTCCTTTATATGTTAACATG
CCCCAATACTCATGCTATGCTCAACCACTAACACCGAAGAAACGACGCTT
ACAATGGACCCCCGATCTACACTCAAAGTTCGTCAAGGCTGTAGAACAGT
ACGGAATCGACGATGCTGTACCCAAGCTATTATTGCGTGCCATGAATGTA
CCCGGACTCACACGAGAGAATGTGGCCAGTCATTTACAGAAGTATCGAGA
GGGTTTGAGGAAGAAGAAGCAAGCAGCTCACTCATTGAGCGATCCAGTTC
ACACCAATTATGCTGCTGAGCGAAATGGAGTGCGCAGAGAAGCGGAGCAC
GTGGATGAAGGTCTGGAGGAAAGTCGCAAACTGGACGACGTGAGTGCTTC
GTCATCGCAGGGCGTGAATTGCGAATCGTCTGAATTGAGCAGTTCAGAGC
AGAATTCATGTATCCGGACGGAGGGAGGTGTACATGGGGCAGAAGGACGT
TTATGTTTATCTGAGCAAGCATTGAAGAAGCGGAGATTGTCTGAGTCTCC
GACGTGA

Coding sequence (CDS) from alignment at tig00000898_pilon:7819..9525+

>Ggra4342.t1 ID=Ggra4342.t1|Name=Ggra4342.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1707bp|location=Sequence derived from alignment at tig00000898_pilon:7819..9525+ (Gracilaria gracilis GNS1m male)
ATGTGCACCACAGCCATTCATTCCGCACGCAACCCGCCTCCCCGCGCGTG
CGCCGCTGAGGACAAAGCTACCAGCCATCAACAGCGCCAAGCCGCCTCCC
CCATCCACGGCGCGGCCTTCATCGTCGTCACATTGCCACAGACTCCCGTC
CGTCTCCATGCACTGCCCTTCCGCCTCCATTACAACCGCGTCTCGCCCTT
CGTTGCTCGTCGCCTTCCCCGCCGTCATGCCACCTTCGTGCGGCCCGACG
TCGTCTCCCGTCGTTCATCGCCGTTCTGTCGGATCGTGCGTCGATCGTCA
CCACGTTCGGCCCGTCGCATGAGCTTCCAGACTCTCGCACCGCCCCGTCG
CCTCCGAGCCCTTGAGCCCTCCCAGCGCGTGCTGGCCGCCAATCTCCCGC
GTGTGCCCGCCGCTGCTCCATCGGTTCCGTCTAGTTTCACACACGCTTCG
TCTCAACCATTGCCTTCTCCTTACGCACTGGCGCAGTCCGTCAATCGGAC
GCGCGCGCCGCTGCTGTGCCCTACGCCGTCGAACGCGTCGCCTGGCTTGC
ACCATGCGTCGCCGCACCCCGCTGCGCACGATGCGCACGCGACGGTACTT
GACCACGCTGTGGGCACGCAGGCGCAGCCGTTGCAGTATCATGTGCCGCA
TTCGTCGCATCAGGTGAGCGCGCCTTGTGTCACACCGCCGCATACCATGT
CACCAGCGACGCCACATATGCAATATGGAATGGTTGCCGATACAGCTCCG
TCTGGCACACCTATTCCCAACGCATCCACCGCGACTTGTACGTACGCACC
TGTGCCCACATCCCCTGCTGCATGGAGCGGAGCGCCCGTTCCGCCGTCTT
CCATCGCTCCGCAAGTGCtgccgcagccacaatacatgccgtacatgcgA
TCCGCCCCTCCTAGCACTGCTTACTACATGTATCCTCCGGTACCGTCTCA
ATATGTTCCGCACCCTGCCTACTATGCGCCCAATTACGCAATGAGTACGT
ATGCGACGGTACCACAGCATCAACAACAATCTGTACATGGCACCGTGGCC
GAACCGCAACCTCCACACCCGGTGGCTACACCTACGATCTCACCTTCTCA
ATTGCCCATTCCCCAATCTCATCCGGCTGTTGCCTCGcaacaacaacaac
aacaacaacaacaacaacCCCTTATGGCATTTCCTTTATATGTTAACATG
CCCCAATACTCATGCTATGCTCAACCACTAACACCGAAGAAACGACGCTT
ACAATGGACCCCCGATCTACACTCAAAGTTCGTCAAGGCTGTAGAACAGT
ACGGAATCGACGATGCTGTACCCAAGCTATTATTGCGTGCCATGAATGTA
CCCGGACTCACACGAGAGAATGTGGCCAGTCATTTACAGAAGTATCGAGA
GGGTTTGAGGAAGAAGAAGCAAGCAGCTCACTCATTGAGCGATCCAGTTC
ACACCAATTATGCTGCTGAGCGAAATGGAGTGCGCAGAGAAGCGGAGCAC
GTGGATGAAGGTCTGGAGGAAAGTCGCAAACTGGACGACGTGAGTGCTTC
GTCATCGCAGGGCGTGAATTGCGAATCGTCTGAATTGAGCAGTTCAGAGC
AGAATTCATGTATCCGGACGGAGGGAGGTGTACATGGGGCAGAAGGACGT
TTATGTTTATCTGAGCAAGCATTGAAGAAGCGGAGATTGTCTGAGTCTCC
GACGTGA