Ggra4306.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4306.t1
Unique NameGgra4306.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length288
Homology
BLAST of Ggra4306.t1 vs. uniprot
Match: R7QVA1 (Glycoside hydrolase family GH16 Endohydrolysis of (1-4)-beta-D-linkages of galactans n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QVA1_CHOCR)

HSP 1 Score: 209 bits (532), Expect = 6.720e-63
Identity = 118/275 (42.91%), Postives = 162/275 (58.91%), Query Frame = 0
Query:   15 SKTRHDTPLPYYLQQEVPRNMKWVKDWRMSDEFDAYPTENWYYNNKWVRYNPLWQGRHPSFFSEDNVYVRDNRLWLQSEERTPTPNDRRKMGRRLDGNSWKYATSFIRTAEKRTYGYYEIACKLMDSNVSSAFWFIDDRD---TEIDVFEYSTSGKNYDIYDKSRVPFKNKFNMNTIVYSGANREHERSNPLKINVGRDLSKEIIKVGFLWKPDVLVWYLNDREVRRLPNHDFHKPLCLQLDSEVFPNWFGEPGEYGAKK--LPNSWQVFYVRSY 284
            SK RH+ P     + +   N  WV++W MSDEF+   T++W    +W   NP W+GR PSFF +DNV V++  + L+S E  P                  ++T+F+RT ++  YGY+EI C++MDS +SSAFWF  +     TE+DVFEYSTS K    + K   P+K  FN N  V+   N   + S+P   + G DLS + +KVGF W+ D + WYLND+ VR   N  FH+PL LQLDSE FP WFG P   G  K  LPN++++FYVRS+
Sbjct:    2 SKPRHE-PFKTPPRIDPGPNHCWVQNWEMSDEFERSLTDSWMRRQRWETINPTWKGRAPSFFKKDNVIVQNGSMKLRSREDNPPAY--------FPSMYKDFSTAFVRTRKRSLYGYFEIYCRMMDSKISSAFWFAYNTPNEWTELDVFEYSTSDKPTS-FGK---PYKQLFNTNMHVHRNPNGV-KMSSPQVYDAGFDLSAQPVKVGFNWQEDKIQWYLNDKLVREEKNEYFHQPLHLQLDSEAFPIWFGLPETGGCHKNSLPNAFEIFYVRSW 262          
BLAST of Ggra4306.t1 vs. uniprot
Match: A0A2V3IL69 (Beta-porphyranase A n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IL69_9FLOR)

HSP 1 Score: 119 bits (297), Expect = 1.000e-27
Identity = 99/298 (33.22%), Postives = 145/298 (48.66%), Query Frame = 0
Query:    5 KDVPALNYNPSKTRHDTPLPYYLQQEVPRNMKWVKDWRMSDE--FDAYPTENWYYNNKWVRYNPLWQGRHPSFFSEDNVYVRDNRLW--LQSEERTPTPNDRRKMGRRLDGNSW------KYATSFIRTAEKRTYGYYEIACKLMDSNVSSAFWFIDDR--DTEIDVFEYSTSGKNYDIYDKSRVPFKNKFNMNTIVYSGANREHERSNPLKINVGRDLSK-EIIKVGFLWKPDVLVWYLNDREVRRLP-NHDF-HKPLCLQLDSEVFPNWFGEPG-EYGAKKLPNSWQVFYVRSYQM 286
            +D  A NY P +   D     Y   E  RN     +  +S++   D+    NW   N W        GR P+ F   N  V +N L   +   + +     R++     D   W       Y T+F R+ ++  YGY EIACKL DS++SSAFW  + R  + EIDVFE+STS K+         PF N +NMN   ++    + + S    IN+  +LS+ E+IK+GFLW    L WY+ND E+R++  N +F    + +QLD E   +WFG P  E G       + V YVR++ +
Sbjct:   45 EDPNAENYLPPQIVRDQLASGY---EFERNDSLSIELNVSNDQTVDSNQLRNWTTENAWT-------GRFPAIFFAKNSIVSNNCLVQVVNIADSSDRETIRQECSDDEDAQKWIEDGKDVYDTTFFRSEQQMMYGYVEIACKLGDSSLSSAFWLKEHRGLEREIDVFEFSTSKKD----SGYSAPFSNMYNMNIHKFT---TDGDFSAQRSINMCTNLSQQELIKIGFLWTTTHLHWYINDVEIRKVQHNGEFCDLGMNIQLDREYL-SWFGLPNDEQGGTDTFGDFVVHYVRTWNI 324          
BLAST of Ggra4306.t1 vs. uniprot
Match: A0A2W5P7V2 (GH16 domain-containing protein n=1 Tax=Sphingomonas taxi TaxID=1549858 RepID=A0A2W5P7V2_9SPHN)

HSP 1 Score: 68.2 bits (165), Expect = 1.450e-9
Identity = 53/173 (30.64%), Postives = 72/173 (41.62%), Query Frame = 0
Query:  128 TYGYYEIACKLMD-SNVSSAFWFI-----------DDRDTEIDVFE-YSTSGKNYDIYDKSRVPFKNKFNMNTIVYSGANREHERSNPLKINVGRDLSKEIIKVGFLWKPDVLVWYLNDREVRRLPNHDFHKPLCLQLDSEVFPNWFGEPGEYGAKKLPNSWQVFYVRSYQMA 287
            TYGY E          +  AFW +               TEIDVFE     GK Y  +                 +       ++ + L +  G DLS      G L  PD LVWY +DREVRR+PN D+H+PL L L+  +   W G P        P   ++ +VR Y++A
Sbjct:  142 TYGYVEARVAFPSRKGIWPAFWLLPVPAMKDGQPQQPGPTEIDVFESIGEPGKLYFTW-----------------FPNLPGNQKKGDGLAMQTGADLSA-FHTYGMLVTPDALVWYFDDREVRRVPNRDYHQPLYLLLNLAIGGTWPGAPA--ADTPWPARMRIDWVRGYRLA 294          
BLAST of Ggra4306.t1 vs. uniprot
Match: A0A654BWL2 (GH16 domain-containing protein n=2 Tax=Sphingomonas sp. 8AM TaxID=2653170 RepID=A0A654BWL2_9SPHN)

HSP 1 Score: 67.8 bits (164), Expect = 1.940e-9
Identity = 53/173 (30.64%), Postives = 77/173 (44.51%), Query Frame = 0
Query:  128 TYGYYEIACKLMDSN-VSSAFWFI------DDRD-----TEIDVFE-YSTSGKNYDIYDKSRVPFKNKFNMNTIVYSGANREHERSNPLKINVGRDLSKEIIKVGFLWKPDVLVWYLNDREVRRLPNHDFHKPLCLQLDSEVFPNWFGEPGEYGAKKLPNSWQVFYVRSYQMA 287
            TYGY E          +  AFW +      D +      TEID+FE     GK Y  Y                 +       ++ + +    G DLS +    G +  P  LVWY +DR VRR+PN D+H+PL L L+  +  NW G P   G +K P   ++ +VR+Y++A
Sbjct:  140 TYGYVEARIAFPSGKGIWPAFWLLPVPAVQDGKQQQPGPTEIDIFESIGEPGKLYFTY-----------------FPNLPNNQKKGDGMPWASGTDLS-QFHTYGMMVTPKELVWYFDDRPVRRVPNKDYHQPLYLLLNLAIGGNWPGAPR--GDQKWPARMKIDWVRAYRIA 292          
BLAST of Ggra4306.t1 vs. uniprot
Match: glycoside hydrolase family 16 protein n=1 Tax=Sphingomonas phyllosphaerae TaxID=257003 RepID=UPI001E5A27E7 (glycoside hydrolase family 16 protein n=1 Tax=Sphingomonas phyllosphaerae TaxID=257003 RepID=UPI001E5A27E7)

HSP 1 Score: 62.8 bits (151), Expect = 9.900e-8
Identity = 43/161 (26.71%), Postives = 72/161 (44.72%), Query Frame = 0
Query:  128 TYGYYEIACKLMDSN-VSSAFWFIDDRDTEIDVFEYSTSGKNYDIYDKSRVPFKNKFNMNTIVYSGANREHERSNPLKINVGRDLSKEIIKVGFLWKPDVLVWYLNDREVRRLPNHDFHKPLCLQLDSEVFPNWFGEPGEYGAKKLPNSWQVFYVRSYQMA 287
            TYGY E          +  AFW +     + D  +        D+++    P K  F      +     + ++ + +    G DLS+     G +  P  L+WY +DR VRR+PN D+H+PL + L+  +   W G P     +K P   ++ +VR Y++A
Sbjct:  137 TYGYVEARVAFPSGKGIWPAFWLLPQPSVK-DGKQQQPGPIEIDVFESIGEPGKLYFTW----FPNLPNQQKKGDGMPWQSGTDLSR-FHTYGMMVTPRELIWYFDDRAVRRVPNRDYHQPLYVLLNLAIGGKWPGAPA--ADQKWPARMRIDWVRGYRLA 289          
BLAST of Ggra4306.t1 vs. uniprot
Match: A0A7G9NUK1 (Glycoside hydrolase family 16 protein n=1 Tax=Planctomycetales bacterium zrk34 TaxID=2723666 RepID=A0A7G9NUK1_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 6.690e-7
Identity = 52/169 (30.77%), Postives = 80/169 (47.34%), Query Frame = 0
Query:  123 TAEKRTYGYYEIACKLMDS-NVSSAFWFI--DDRDTEIDVFEYSTSGKNYDIYDKSRVPFKNKFNMNTIVYSGANREHERSNPLKINVGRDLSKEIIKVGFLWKPDVLVWYLNDREVRRLPNHDFHKPLCLQLDSEVFPNWFGEPGEY--GAKKLPNSWQVFYVRSYQM 286
            T +K  YGYYE + +   +  +++AFW +  + + TE         G   DI ++   P +    +NT ++    + H       +  G DLSK   + GFLW    LVWY +D+E+RR PN   H P  ++L + V   W G   +   GA     S  V YVR Y++
Sbjct:  109 TKQKFFYGYYEASFRYAGAPGLNNAFWIMPWNPKKTE--------GGHEIDI-NEGHYPNE----VNTNIHEWYPKHHGHGKHF-VREGEDLSKGFHRYGFLWTEKDLVWYYDDKEIRREPNSWCHIPGLVRLSTAVM-KWAGPITDALDGA-----SMDVQYVRVYKL 257          
BLAST of Ggra4306.t1 vs. uniprot
Match: glycoside hydrolase family 16 protein n=1 Tax=Sphingomonas endophytica TaxID=869719 RepID=UPI00187CEDF0 (glycoside hydrolase family 16 protein n=1 Tax=Sphingomonas endophytica TaxID=869719 RepID=UPI00187CEDF0)

HSP 1 Score: 59.7 bits (143), Expect = 1.110e-6
Identity = 56/191 (29.32%), Postives = 78/191 (40.84%), Query Frame = 0
Query:  112 NSWKYATSFIRTAEKR---TYGYYEIACKLMDSN-VSSAFWFI-----------DDRDTEIDVFE-YSTSGKNYDIYDKSRVPFKNKFNMNTIVYSGANREHERSNPLKINVGRDLSKEIIKVGFLWKPDVLVWYLNDREVRRLPNHDFHKPLCLQLDSEVFPNWFGEPGEYGAKKLPNSWQVFYVRSYQM 286
            N   Y +  I T EK    TYGY E          +  AFW +                EIDVFE     G+ Y  Y    +P   K   N    SGA+  H  +  +K+                  P  LVWY +DREVRR+PN D+H+PL L L+  +   W G P     +  P   ++ +VR +++
Sbjct:  120 NGLPYLSGLI-TTEKSFHFTYGYVEARVAFPSGKGIWPAFWLLPVPAVKDGKPQQPGPIEIDVFESIGEPGRLYFTYFPD-LPNNQKKGDNMPWNSGADLSHFHTYGMKVT-----------------PKELVWYFDDREVRRVPNKDYHQPLYLLLNLAIGGKWPGAPA--ADQTWPARMRIEWVRGWRL 289          
BLAST of Ggra4306.t1 vs. uniprot
Match: A0A840Z850 (Beta-glucanase (GH16 family) n=3 Tax=Sphingomonas endophytica TaxID=869719 RepID=A0A840Z850_9SPHN)

HSP 1 Score: 58.9 bits (141), Expect = 2.100e-6
Identity = 31/80 (38.75%), Postives = 45/80 (56.25%), Query Frame = 0
Query:  208 GRDLSKEIIKVGFLWKPDVLVWYLNDREVRRLPNHDFHKPLCLQLDSEVFPNWFGEPGEYGAKKLPNSWQVFYVRSYQMA 287
            G DLS +    G +  P  LVWY +DR VRR PN D+H+PL + L+  +   W G P     +K P   ++ +VR Y++A
Sbjct:  221 GTDLS-QFHTYGMMVTPKELVWYFDDRVVRRAPNRDYHQPLYMILNLAIGGTWPGAPT--ADQKWPARMKIDWVRGYRVA 297          
BLAST of Ggra4306.t1 vs. uniprot
Match: A0A2V3IBA7 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IBA7_9FLOR)

HSP 1 Score: 56.2 bits (134), Expect = 9.360e-6
Identity = 47/154 (30.52%), Postives = 67/154 (43.51%), Query Frame = 0
Query:    5 KDVPALNYNPSKTRHDTPLPYYLQQEVPRNMKWVKDWRMSDE--FDAYPTENWYYNNKWVRYNPLWQGRHPSFFSEDNVYVRDNRLW--LQSEERTPTPNDRRKMGRRLDGNSW------KYATSFIRTAEKRTYGYYEIACKLMDSNVSSAFW 148
            +D  A NY P +   D     Y   E  RN     +  +S++   D+    NW   N W        GR P+ F   N  V +N L   +   + +     R++     D   W       Y T+F R+ ++  YGY EIACKL DS++SSAFW
Sbjct:   45 EDPNAENYLPPQIVRDQLASGY---EFERNDSLSIELNVSNDQTVDSNQLRNWTTENAWT-------GRFPAIFFAKNSIVSNNCLVQVVNIADSSDRETIRQECSDDEDAQKWIEDGKDVYDTTFFRSEQQMMYGYVEIACKLGDSSLSSAFW 188          
The following BLAST results are available for this feature:
BLAST of Ggra4306.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
R7QVA16.720e-6342.91Glycoside hydrolase family GH16 Endohydrolysis of ... [more]
A0A2V3IL691.000e-2733.22Beta-porphyranase A n=2 Tax=Gracilariopsis chorda ... [more]
A0A2W5P7V21.450e-930.64GH16 domain-containing protein n=1 Tax=Sphingomona... [more]
A0A654BWL21.940e-930.64GH16 domain-containing protein n=2 Tax=Sphingomona... [more]
glycoside hydrolase family 16 protein n=1 Tax=Sphingomonas phyllosphaerae TaxID=257003 RepID=UPI001E5A27E79.900e-826.71glycoside hydrolase family 16 protein n=1 Tax=Sphi... [more]
A0A7G9NUK16.690e-730.77Glycoside hydrolase family 16 protein n=1 Tax=Plan... [more]
glycoside hydrolase family 16 protein n=1 Tax=Sphingomonas endophytica TaxID=869719 RepID=UPI00187CEDF01.110e-629.32glycoside hydrolase family 16 protein n=1 Tax=Sphi... [more]
A0A840Z8502.100e-638.75Beta-glucanase (GH16 family) n=3 Tax=Sphingomonas ... [more]
A0A2V3IBA79.360e-630.52Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.60.120.200coord: 21..287
e-value: 3.2E-40
score: 140.3
IPR000757Glycoside hydrolase family 16PFAMPF00722Glyco_hydro_16coord: 78..243
e-value: 4.4E-9
score: 36.1
IPR000757Glycoside hydrolase family 16PROSITEPS51762GH16_2coord: 16..287
score: 15.684914
IPR013320Concanavalin A-like lectin/glucanase domain superfamilySUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 37..286

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000022_piloncontigtig00000022_pilon:432766..433629 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4306.t1Ggra4306.t1Gracilaria gracilis GNS1m malemRNAtig00000022_pilon 432766..433629 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4306.t1 ID=Ggra4306.t1|Name=Ggra4306.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=288bp
MTLYKDVPALNYNPSKTRHDTPLPYYLQQEVPRNMKWVKDWRMSDEFDAY
PTENWYYNNKWVRYNPLWQGRHPSFFSEDNVYVRDNRLWLQSEERTPTPN
DRRKMGRRLDGNSWKYATSFIRTAEKRTYGYYEIACKLMDSNVSSAFWFI
DDRDTEIDVFEYSTSGKNYDIYDKSRVPFKNKFNMNTIVYSGANREHERS
NPLKINVGRDLSKEIIKVGFLWKPDVLVWYLNDREVRRLPNHDFHKPLCL
QLDSEVFPNWFGEPGEYGAKKLPNSWQVFYVRSYQMA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000757GH16
IPR013320ConA-like_dom_sf