Ggra4306.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4306.t1
Unique NameGgra4306.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length288
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000022_piloncontigtig00000022_pilon:432766..433629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog583355.Caka_0059
PFAMsBig_4,Glyco_hydro_16,RicinB_lectin_2
Max annot lvl2|Bacteria
KEGG koko:K20846
Evalue2.2e-31
EggNOG OGsCOG2273@1|root,COG2273@2|Bacteria
EC3.2.1.83
Descriptionxyloglucan:xyloglucosyl transferase activity
COG categoryG
CAZyGH16
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4306Ggra4306Gracilaria gracilis GNS1m malegenetig00000022_pilon 432766..433629 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4306.t1.stop1Ggra4306.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000022_pilon 432766..432768 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4306.t1.CDS1Ggra4306.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000022_pilon 432766..433629 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4306.t1.exon1Ggra4306.t1.exon1Gracilaria gracilis GNS1m maleexontig00000022_pilon 432766..433629 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4306.t1.start1Ggra4306.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000022_pilon 433627..433629 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4306.t1Ggra4306.t1Gracilaria gracilis GNS1m malepolypeptidetig00000022_pilon 432766..433629 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4306.t1 ID=Ggra4306.t1|Name=Ggra4306.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=288bp
MTLYKDVPALNYNPSKTRHDTPLPYYLQQEVPRNMKWVKDWRMSDEFDAY
PTENWYYNNKWVRYNPLWQGRHPSFFSEDNVYVRDNRLWLQSEERTPTPN
DRRKMGRRLDGNSWKYATSFIRTAEKRTYGYYEIACKLMDSNVSSAFWFI
DDRDTEIDVFEYSTSGKNYDIYDKSRVPFKNKFNMNTIVYSGANREHERS
NPLKINVGRDLSKEIIKVGFLWKPDVLVWYLNDREVRRLPNHDFHKPLCL
QLDSEVFPNWFGEPGEYGAKKLPNSWQVFYVRSYQMA*
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spliced messenger RNA

>Ggra4306.t1 ID=Ggra4306.t1|Name=Ggra4306.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=864bp|location=Sequence derived from alignment at tig00000022_pilon:432766..433629- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCTCTACAAAGATGTCCCCGCTCTCAACTACAACCCCTCCAAAAC
CCGCCACGATACTCCTCTCCCCTACTACCTCCAACAAGAGGTGCCGCGTA
ACATGAAGTGGGTCAAGGACTGGAGAATGTCCGATGAATTTGATGCTTAC
CCCACCGAGAACTGGTACTACAATAACAAATGGGTGCGGTATAACCCGCT
TTGGCAAGGAAGGCACCCGAGTTTCTTCTCAGAGGACAACGTGTACGTGC
GTGACAATCGCTTGTGGTTGCAGTCTGAGGAGAGAACACCGACGCCCAAC
GATCGCAGGAAGATGGGACGTCGTCTGGACGGAAACAGTTGGAAATACGC
CACTAGTTTCATTCGAACCGCTGAGAAACGCACCTACGGTTACTATGAGA
TCGCATGCAAGCTCATGGACAGTAACGTCAGCTCCGCATTCTGGTTTATC
GACGACCGCGACACCGAGATTGACGTGTTCGAGTACTCCACCTCCGGTAA
GAACTACGACATCTACGACAAGTCTCGCGTACCGTTCAAGAACAAGTTCA
ACATGAACACCATTGTGTACTCTGGAGCAAACCGAGAACACGAGCGATCC
AACCCATTGAAGATCAATGTGGGACGCGATTTGAGCAAGGAAATCATCAA
AGTGGGCTTCCTTTGGAAGCCTGATGTGCTGGTGTGGTACCTGAACGATC
GTGAAGTACGTCGACTTCCAAACCACGACTTCCACAAACCGTTGTGCTTG
CAGCTGGACTCTGAGGTGTTCCCTAATTGGTTTGGAGAACCAGGAGAGTA
TGGAGCGAAGAAACTACCGAATTCTTGGCAGGTGTTCTACGTTCGAAGCT
ATCAGATGGCATGA
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protein sequence of Ggra4306.t1

>Ggra4306.t1 ID=Ggra4306.t1|Name=Ggra4306.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=288bp
MTLYKDVPALNYNPSKTRHDTPLPYYLQQEVPRNMKWVKDWRMSDEFDAY
PTENWYYNNKWVRYNPLWQGRHPSFFSEDNVYVRDNRLWLQSEERTPTPN
DRRKMGRRLDGNSWKYATSFIRTAEKRTYGYYEIACKLMDSNVSSAFWFI
DDRDTEIDVFEYSTSGKNYDIYDKSRVPFKNKFNMNTIVYSGANREHERS
NPLKINVGRDLSKEIIKVGFLWKPDVLVWYLNDREVRRLPNHDFHKPLCL
QLDSEVFPNWFGEPGEYGAKKLPNSWQVFYVRSYQMA*
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mRNA from alignment at tig00000022_pilon:432766..433629-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4306.t1 ID=Ggra4306.t1|Name=Ggra4306.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=864bp|location=Sequence derived from alignment at tig00000022_pilon:432766..433629- (Gracilaria gracilis GNS1m male)
ATGACTCTCTACAAAGATGTCCCCGCTCTCAACTACAACCCCTCCAAAAC
CCGCCACGATACTCCTCTCCCCTACTACCTCCAACAAGAGGTGCCGCGTA
ACATGAAGTGGGTCAAGGACTGGAGAATGTCCGATGAATTTGATGCTTAC
CCCACCGAGAACTGGTACTACAATAACAAATGGGTGCGGTATAACCCGCT
TTGGCAAGGAAGGCACCCGAGTTTCTTCTCAGAGGACAACGTGTACGTGC
GTGACAATCGCTTGTGGTTGCAGTCTGAGGAGAGAACACCGACGCCCAAC
GATCGCAGGAAGATGGGACGTCGTCTGGACGGAAACAGTTGGAAATACGC
CACTAGTTTCATTCGAACCGCTGAGAAACGCACCTACGGTTACTATGAGA
TCGCATGCAAGCTCATGGACAGTAACGTCAGCTCCGCATTCTGGTTTATC
GACGACCGCGACACCGAGATTGACGTGTTCGAGTACTCCACCTCCGGTAA
GAACTACGACATCTACGACAAGTCTCGCGTACCGTTCAAGAACAAGTTCA
ACATGAACACCATTGTGTACTCTGGAGCAAACCGAGAACACGAGCGATCC
AACCCATTGAAGATCAATGTGGGACGCGATTTGAGCAAGGAAATCATCAA
AGTGGGCTTCCTTTGGAAGCCTGATGTGCTGGTGTGGTACCTGAACGATC
GTGAAGTACGTCGACTTCCAAACCACGACTTCCACAAACCGTTGTGCTTG
CAGCTGGACTCTGAGGTGTTCCCTAATTGGTTTGGAGAACCAGGAGAGTA
TGGAGCGAAGAAACTACCGAATTCTTGGCAGGTGTTCTACGTTCGAAGCT
ATCAGATGGCATGA
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Coding sequence (CDS) from alignment at tig00000022_pilon:432766..433629-

>Ggra4306.t1 ID=Ggra4306.t1|Name=Ggra4306.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=864bp|location=Sequence derived from alignment at tig00000022_pilon:432766..433629- (Gracilaria gracilis GNS1m male)
ATGACTCTCTACAAAGATGTCCCCGCTCTCAACTACAACCCCTCCAAAAC
CCGCCACGATACTCCTCTCCCCTACTACCTCCAACAAGAGGTGCCGCGTA
ACATGAAGTGGGTCAAGGACTGGAGAATGTCCGATGAATTTGATGCTTAC
CCCACCGAGAACTGGTACTACAATAACAAATGGGTGCGGTATAACCCGCT
TTGGCAAGGAAGGCACCCGAGTTTCTTCTCAGAGGACAACGTGTACGTGC
GTGACAATCGCTTGTGGTTGCAGTCTGAGGAGAGAACACCGACGCCCAAC
GATCGCAGGAAGATGGGACGTCGTCTGGACGGAAACAGTTGGAAATACGC
CACTAGTTTCATTCGAACCGCTGAGAAACGCACCTACGGTTACTATGAGA
TCGCATGCAAGCTCATGGACAGTAACGTCAGCTCCGCATTCTGGTTTATC
GACGACCGCGACACCGAGATTGACGTGTTCGAGTACTCCACCTCCGGTAA
GAACTACGACATCTACGACAAGTCTCGCGTACCGTTCAAGAACAAGTTCA
ACATGAACACCATTGTGTACTCTGGAGCAAACCGAGAACACGAGCGATCC
AACCCATTGAAGATCAATGTGGGACGCGATTTGAGCAAGGAAATCATCAA
AGTGGGCTTCCTTTGGAAGCCTGATGTGCTGGTGTGGTACCTGAACGATC
GTGAAGTACGTCGACTTCCAAACCACGACTTCCACAAACCGTTGTGCTTG
CAGCTGGACTCTGAGGTGTTCCCTAATTGGTTTGGAGAACCAGGAGAGTA
TGGAGCGAAGAAACTACCGAATTCTTGGCAGGTGTTCTACGTTCGAAGCT
ATCAGATGGCATGA
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