Ggra4301.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4301.t1
Unique NameGgra4301.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length447
Homology
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BLAST of Ggra4301.t1 vs. uniprot
Match: A0A2V3IES5 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IES5_9FLOR)

HSP 1 Score: 416 bits (1069), Expect = 3.200e-140
Identity = 232/397 (58.44%), Postives = 277/397 (69.77%), Query Frame = 0 
Query:   54 FVYPVGRNVIICNGCGAGSTTYQNDALLCRRIGYPCPKGHHETDSGDCWRCEADQYFDFDQDRCVSCPSGTGAAPGLARACAPCSRMLERGITRSNCVRDDWFASQGG-NCPLGSRVVSRDSLNIPICEKCQPGSFSAERNPTQXXXXXXXXXXXXXXXXXXXXXXPGKK--PNDDRTQCVQADTGCSEDQKPATMDGKNFCRSTRCGNGDNSIEAVYGRTCGPCK----KNGFVTTKGFYPATCSTCPVDTLSDGLTCTKCPRGQVRMEDKRCGCRGPLALNRGVDADGNCVKCKPGSRGVPGPDGENXXXXXXXXTWLLPRSDMELANCVESTSCNPFKNPCEPCRAGMTSGPGTLAFGCKPCPEGSYSYGLGSRCLREGEPSAPVPFTDPFGDS 443
             +YP G  +  C  C +GSTTY+NDAL+CRR+G+PCP G+ ETDSGDCWRC ADQ FD    RCV CP+GTGAAPGL+  CAPCS+M+ERG++ S CV + WF  +G  +CPLGSRV  RDSLN+P+CEKC PG FSAERNP+QXXXXXXXXXXXXXXXXXXXXX P      N+DRT+CV A+TGC  DQ+PA ++G++ CRSTRCGNGDNS EA  GR CGPCK    +NGF+ T G +   CS+CPVDTLSDGL CT CPRGQVR ED RCGCRGPLAL RGVDADGNCV+C  G+ G+PGP    XXXXXXXX     ++D +L  C E   C+PF +          S                         LR+GEP+A VP+ DPFG++
Sbjct:    1 MLYP-GSTITQCRPCPSGSTTYENDALMCRRVGFPCPSGYRETDSGDCWRCHADQRFDLKLQRCVKCPTGTGAAPGLSLWCAPCSKMMERGVSDSGCVLERWFLPEGRRDCPLGSRVAYRDSLNVPVCEKCPPGFFSAERNPSQXXXXXXXXXXXXXXXXXXXXXAPYAPIVANEDRTKCVDANTGCDADQQPAVVNGQSICRSTRCGNGDNSTEAAIGRVCGPCKPHPWRNGFLRTDGDFAGECSSCPVDTLSDGLVCTTCPRGQVRTEDGRCGCRGPLALTRGVDADGNCVQCPKGTSGMPGPXXXXXXXXXXXXXSYYAQTDRQLLGCAEEPRCSPFSDLXXXXXXXTVSTEAGSLRCXXXXXXXXXXXXXXXXXLRKGEPTARVPYNDPFGNT 396
The following BLAST results are available for this feature:
BLAST of Ggra4301.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IES53.200e-14058.44Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM01411GCC2_GCC3_2coord: 336..377
e-value: 25.0
score: 4.3
coord: 108..180
e-value: 1.1
score: 16.6
coord: 186..230
e-value: 0.028
score: 23.6
coord: 285..322
e-value: 15.0
score: 6.5
coord: 381..424
e-value: 54.0
score: 1.3
NoneNo IPR availableGENE3D2.10.50.10Tumor Necrosis Factor Receptor, subunit A, domain 2coord: 163..233
e-value: 1.0E-8
score: 37.1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..446
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
IPR009030Growth factor receptor cysteine-rich domain superfamilySUPERFAMILY57184Growth factor receptor domaincoord: 30..237
IPR009030Growth factor receptor cysteine-rich domain superfamilySUPERFAMILY57184Growth factor receptor domaincoord: 272..425

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000022_piloncontigtig00000022_pilon:335510..336850 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4301.t1Ggra4301.t1Gracilaria gracilis GNS1m malemRNAtig00000022_pilon 335510..336850 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4301.t1 ID=Ggra4301.t1|Name=Ggra4301.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=447bp
MIITLFQASLVLVLASFAAARCPDGTLQLYHAPPGICVPGPNGCPQGSVR
KVVFVYPVGRNVIICNGCGAGSTTYQNDALLCRRIGYPCPKGHHETDSGD
CWRCEADQYFDFDQDRCVSCPSGTGAAPGLARACAPCSRMLERGITRSNC
VRDDWFASQGGNCPLGSRVVSRDSLNIPICEKCQPGSFSAERNPTQCTEC
PAGLVASEEGAQSCEPCLPGKKPNDDRTQCVQADTGCSEDQKPATMDGKN
FCRSTRCGNGDNSIEAVYGRTCGPCKKNGFVTTKGFYPATCSTCPVDTLS
DGLTCTKCPRGQVRMEDKRCGCRGPLALNRGVDADGNCVKCKPGSRGVPG
PDGENVCTKCPAGTWLLPRSDMELANCVESTSCNPFKNPCEPCRAGMTSG
PGTLAFGCKPCPEGSYSYGLGSRCLREGEPSAPVPFTDPFGDSVVA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009030Growth_fac_rcpt_cys_sf