Ggra4301.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4301.t1
Unique NameGgra4301.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length447
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000022_piloncontigtig00000022_pilon:335510..336850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog69293.ENSGACP00000025546
Preferred nameSCUBE1
PFAMsCUB,EGF_CA,Ephrin_rec_like,FXa_inhibition,cEGF
Max annot lvl33208|Metazoa
GOsGO:0003158,GO:0003674,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005623,GO:0005886,GO:0006950,GO:0006952,GO:0006954,GO:0007154,GO:0007165,GO:0007275,GO:0007507,GO:0007512,GO:0007596,GO:0007599,GO:0008150,GO:0008589,GO:0009611,GO:0009791,GO:0009888,GO:0009897,GO:0009966,GO:0009967,GO:0009986,GO:0009987,GO:0010646,GO:0010647,GO:0016020,GO:0016043,GO:0019897,GO:0019898,GO:0022411,GO:0022607,GO:0022617,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030198,GO:0030855,GO:0032501,GO:0032502,GO:0042060,GO:0042802,GO:0043062,GO:0043167,GO:0043169,GO:0043933,GO:0044085,GO:0044421,GO:0044425,GO:0044459,GO:0044464,GO:0045446,GO:0045880,GO:0046872,GO:0046982,GO:0046983,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050817,GO:0050878,GO:0050896,GO:0051259,GO:0051260,GO:0051716,GO:0060429,GO:0065003,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0072359,GO:0098552
Evalue0.000279
EggNOG OGsKOG1217@1|root,KOG1217@2759|Eukaryota,38H1E@33154|Opisthokonta,3BCPX@33208|Metazoa,3CSEI@33213|Bilateria,485RU@7711|Chordata,494Q3@7742|Vertebrata,4A27M@7898|Actinopterygii
DescriptionSignal peptide, CUB
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4301Ggra4301Gracilaria gracilis GNS1m malegenetig00000022_pilon 335510..336850 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4301.t1.start1Ggra4301.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000022_pilon 335510..335512 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4301.t1.CDS1Ggra4301.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000022_pilon 335510..336850 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4301.t1.exon1Ggra4301.t1.exon1Gracilaria gracilis GNS1m maleexontig00000022_pilon 335510..336850 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4301.t1.stop1Ggra4301.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000022_pilon 336848..336850 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4301.t1Ggra4301.t1Gracilaria gracilis GNS1m malepolypeptidetig00000022_pilon 335510..336850 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4301.t1 ID=Ggra4301.t1|Name=Ggra4301.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=447bp
MIITLFQASLVLVLASFAAARCPDGTLQLYHAPPGICVPGPNGCPQGSVR
KVVFVYPVGRNVIICNGCGAGSTTYQNDALLCRRIGYPCPKGHHETDSGD
CWRCEADQYFDFDQDRCVSCPSGTGAAPGLARACAPCSRMLERGITRSNC
VRDDWFASQGGNCPLGSRVVSRDSLNIPICEKCQPGSFSAERNPTQCTEC
PAGLVASEEGAQSCEPCLPGKKPNDDRTQCVQADTGCSEDQKPATMDGKN
FCRSTRCGNGDNSIEAVYGRTCGPCKKNGFVTTKGFYPATCSTCPVDTLS
DGLTCTKCPRGQVRMEDKRCGCRGPLALNRGVDADGNCVKCKPGSRGVPG
PDGENVCTKCPAGTWLLPRSDMELANCVESTSCNPFKNPCEPCRAGMTSG
PGTLAFGCKPCPEGSYSYGLGSRCLREGEPSAPVPFTDPFGDSVVA*
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spliced messenger RNA

>Ggra4301.t1 ID=Ggra4301.t1|Name=Ggra4301.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1341bp|location=Sequence derived from alignment at tig00000022_pilon:335510..336850+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTATCACTCTGTTTCAGGCTTCACTGGTCCTCGTCCTGGCATCCTT
TGCTGCTGCAAGGTGTCCGGACGGAACACTGCAACTATATCATGCGCCAC
CAGGAATTTGTGTTCCCGGTCCCAACGGATGTCCGCAAGGCTCGGTTCGA
AAAGTGGTCTTCGTCTACCCGGTAGGCAGGAACGTGATCATATGTAATGG
CTGTGGGGCTGGCTCCACCACTTATCAGAACGACGCACTTCTCTGCCGTC
GCATCGGCTACCCCTGCCCGAAAGGACACCACGAAACAGACAGTGGCGAC
TGCTGGCGCTGCGAAGCCGATCAGTACTTTGACTTTGATCAAGATCGTTG
CGTCTCCTGCCCGAGCGGAACCGGTGCAGCTCCCGGGCTCGCTCGGGCTT
GCGCGCCGTGCTCAAGAATGTTGGAGAGGGGCATCACAAGGTCAAACTGC
GTCCGAGACGATTGGTTCGCGTCGCAAGGAGGAAACTGCCCCTTAGGCTC
ACGTGTGGTGTCCCGAGACTCGTTGAACATCCCGATTTGCGAAAAGTGCC
AACCCGGGTCCTTCAGCGCCGAAAGAAACCCCACGCAGTGCACCGAGTGT
CCTGCCGGCTTGGTGGCGTCGGAAGAAGGCGCACAGAGTTGCGAGCCTTG
TCTGCCCGGCAAGAAACCGAACGACGACCGTACGCAATGCGTGCAAGCCG
ACACGGGCTGCTCAGAGGACCAGAAGCCGGCTACAATGGACGGGAAAAAT
TTTTGTCGTTCCACACGCTGCGGGAACGGCGACAACTCGATCGAGGCAGT
GTATGGGCGTACATGTGGCCCATGCAAGAAAAATGGATTCGTGACAACAA
AAGGCTTTTATCCAGCGACATGCAGCACGTGCCCGGTGGACACACTTTCC
GACGGTCTGACGTGCACAAAGTGCCCGCGCGGGCAGGTGAGGATGGAAGA
CAAACGGTGCGGCTGCCGCGGCCCGCTGGCATTGAATCGCGGGGTGGATG
CGGATGGGAACTGTGTCAAGTGCAAGCCAGGCAGCCGCGGCGTTCCCGGC
CCGGACGGCGAGAACGTTTGTACCAAGTGCCCGGCGGGCACCTGGCTGCT
TCCAAGATCGGACATGGAACTGGCGAACTGCGTTGAAAGTACGAGCTGCA
ACCCTTTCAAAAACCCCTGCGAGCCATGTCGAGCGGGTATGACGTCGGGA
CCGGGGACTCTTGCGTTTGGCTGTAAGCCATGCCCTGAAGGAAGCTATAG
TTATGGACTTGGTTCGAGGTGCTTGAGGGAGGGAGAGCCTTCGGCTCCAG
TGCCGTTCACTGATCCCTTTGGAGATTCGGTTGTGGCCTAG
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protein sequence of Ggra4301.t1

>Ggra4301.t1 ID=Ggra4301.t1|Name=Ggra4301.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=447bp
MIITLFQASLVLVLASFAAARCPDGTLQLYHAPPGICVPGPNGCPQGSVR
KVVFVYPVGRNVIICNGCGAGSTTYQNDALLCRRIGYPCPKGHHETDSGD
CWRCEADQYFDFDQDRCVSCPSGTGAAPGLARACAPCSRMLERGITRSNC
VRDDWFASQGGNCPLGSRVVSRDSLNIPICEKCQPGSFSAERNPTQCTEC
PAGLVASEEGAQSCEPCLPGKKPNDDRTQCVQADTGCSEDQKPATMDGKN
FCRSTRCGNGDNSIEAVYGRTCGPCKKNGFVTTKGFYPATCSTCPVDTLS
DGLTCTKCPRGQVRMEDKRCGCRGPLALNRGVDADGNCVKCKPGSRGVPG
PDGENVCTKCPAGTWLLPRSDMELANCVESTSCNPFKNPCEPCRAGMTSG
PGTLAFGCKPCPEGSYSYGLGSRCLREGEPSAPVPFTDPFGDSVVA*
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mRNA from alignment at tig00000022_pilon:335510..336850+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4301.t1 ID=Ggra4301.t1|Name=Ggra4301.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1341bp|location=Sequence derived from alignment at tig00000022_pilon:335510..336850+ (Gracilaria gracilis GNS1m male)
ATGATTATCACTCTGTTTCAGGCTTCACTGGTCCTCGTCCTGGCATCCTT
TGCTGCTGCAAGGTGTCCGGACGGAACACTGCAACTATATCATGCGCCAC
CAGGAATTTGTGTTCCCGGTCCCAACGGATGTCCGCAAGGCTCGGTTCGA
AAAGTGGTCTTCGTCTACCCGGTAGGCAGGAACGTGATCATATGTAATGG
CTGTGGGGCTGGCTCCACCACTTATCAGAACGACGCACTTCTCTGCCGTC
GCATCGGCTACCCCTGCCCGAAAGGACACCACGAAACAGACAGTGGCGAC
TGCTGGCGCTGCGAAGCCGATCAGTACTTTGACTTTGATCAAGATCGTTG
CGTCTCCTGCCCGAGCGGAACCGGTGCAGCTCCCGGGCTCGCTCGGGCTT
GCGCGCCGTGCTCAAGAATGTTGGAGAGGGGCATCACAAGGTCAAACTGC
GTCCGAGACGATTGGTTCGCGTCGCAAGGAGGAAACTGCCCCTTAGGCTC
ACGTGTGGTGTCCCGAGACTCGTTGAACATCCCGATTTGCGAAAAGTGCC
AACCCGGGTCCTTCAGCGCCGAAAGAAACCCCACGCAGTGCACCGAGTGT
CCTGCCGGCTTGGTGGCGTCGGAAGAAGGCGCACAGAGTTGCGAGCCTTG
TCTGCCCGGCAAGAAACCGAACGACGACCGTACGCAATGCGTGCAAGCCG
ACACGGGCTGCTCAGAGGACCAGAAGCCGGCTACAATGGACGGGAAAAAT
TTTTGTCGTTCCACACGCTGCGGGAACGGCGACAACTCGATCGAGGCAGT
GTATGGGCGTACATGTGGCCCATGCAAGAAAAATGGATTCGTGACAACAA
AAGGCTTTTATCCAGCGACATGCAGCACGTGCCCGGTGGACACACTTTCC
GACGGTCTGACGTGCACAAAGTGCCCGCGCGGGCAGGTGAGGATGGAAGA
CAAACGGTGCGGCTGCCGCGGCCCGCTGGCATTGAATCGCGGGGTGGATG
CGGATGGGAACTGTGTCAAGTGCAAGCCAGGCAGCCGCGGCGTTCCCGGC
CCGGACGGCGAGAACGTTTGTACCAAGTGCCCGGCGGGCACCTGGCTGCT
TCCAAGATCGGACATGGAACTGGCGAACTGCGTTGAAAGTACGAGCTGCA
ACCCTTTCAAAAACCCCTGCGAGCCATGTCGAGCGGGTATGACGTCGGGA
CCGGGGACTCTTGCGTTTGGCTGTAAGCCATGCCCTGAAGGAAGCTATAG
TTATGGACTTGGTTCGAGGTGCTTGAGGGAGGGAGAGCCTTCGGCTCCAG
TGCCGTTCACTGATCCCTTTGGAGATTCGGTTGTGGCCTAG
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Coding sequence (CDS) from alignment at tig00000022_pilon:335510..336850+

>Ggra4301.t1 ID=Ggra4301.t1|Name=Ggra4301.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1341bp|location=Sequence derived from alignment at tig00000022_pilon:335510..336850+ (Gracilaria gracilis GNS1m male)
ATGATTATCACTCTGTTTCAGGCTTCACTGGTCCTCGTCCTGGCATCCTT
TGCTGCTGCAAGGTGTCCGGACGGAACACTGCAACTATATCATGCGCCAC
CAGGAATTTGTGTTCCCGGTCCCAACGGATGTCCGCAAGGCTCGGTTCGA
AAAGTGGTCTTCGTCTACCCGGTAGGCAGGAACGTGATCATATGTAATGG
CTGTGGGGCTGGCTCCACCACTTATCAGAACGACGCACTTCTCTGCCGTC
GCATCGGCTACCCCTGCCCGAAAGGACACCACGAAACAGACAGTGGCGAC
TGCTGGCGCTGCGAAGCCGATCAGTACTTTGACTTTGATCAAGATCGTTG
CGTCTCCTGCCCGAGCGGAACCGGTGCAGCTCCCGGGCTCGCTCGGGCTT
GCGCGCCGTGCTCAAGAATGTTGGAGAGGGGCATCACAAGGTCAAACTGC
GTCCGAGACGATTGGTTCGCGTCGCAAGGAGGAAACTGCCCCTTAGGCTC
ACGTGTGGTGTCCCGAGACTCGTTGAACATCCCGATTTGCGAAAAGTGCC
AACCCGGGTCCTTCAGCGCCGAAAGAAACCCCACGCAGTGCACCGAGTGT
CCTGCCGGCTTGGTGGCGTCGGAAGAAGGCGCACAGAGTTGCGAGCCTTG
TCTGCCCGGCAAGAAACCGAACGACGACCGTACGCAATGCGTGCAAGCCG
ACACGGGCTGCTCAGAGGACCAGAAGCCGGCTACAATGGACGGGAAAAAT
TTTTGTCGTTCCACACGCTGCGGGAACGGCGACAACTCGATCGAGGCAGT
GTATGGGCGTACATGTGGCCCATGCAAGAAAAATGGATTCGTGACAACAA
AAGGCTTTTATCCAGCGACATGCAGCACGTGCCCGGTGGACACACTTTCC
GACGGTCTGACGTGCACAAAGTGCCCGCGCGGGCAGGTGAGGATGGAAGA
CAAACGGTGCGGCTGCCGCGGCCCGCTGGCATTGAATCGCGGGGTGGATG
CGGATGGGAACTGTGTCAAGTGCAAGCCAGGCAGCCGCGGCGTTCCCGGC
CCGGACGGCGAGAACGTTTGTACCAAGTGCCCGGCGGGCACCTGGCTGCT
TCCAAGATCGGACATGGAACTGGCGAACTGCGTTGAAAGTACGAGCTGCA
ACCCTTTCAAAAACCCCTGCGAGCCATGTCGAGCGGGTATGACGTCGGGA
CCGGGGACTCTTGCGTTTGGCTGTAAGCCATGCCCTGAAGGAAGCTATAG
TTATGGACTTGGTTCGAGGTGCTTGAGGGAGGGAGAGCCTTCGGCTCCAG
TGCCGTTCACTGATCCCTTTGGAGATTCGGTTGTGGCCTAG
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