Ggra422.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra422.t1
Unique Name	Ggra422.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	144

Homology

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BLAST of Ggra422.t1 vs. uniprot
Match: Q6B8L7 (C-phycocyanin beta subunit n=33 Tax=Rhodymeniophycidae TaxID=2045261 RepID=Q6B8L7_GRATL)

HSP 1 Score: 267 bits (682), Expect = 8.620e-90
Identity = 137/143 (95.80%), Postives = 141/143 (98.60%), Query Frame = 0

Query:    1 MVSEGNKRLDIVNKINSNASAIVTNSARALFAEQPQLVQPGGNAYTSRRMAACLRDMEIVLRYVSYAMIAGDSSVLDDRCLNGLRETYQALGTPGTSVAVAIQKMKEASVSLANDSNGITIGDCSSLTAELGVYFDRAAVAVV 143
            MV+EGNKRLDIVNKINSNASAI+TNSAR+LFAEQPQLVQPGGNAYT+RRMAACLRDMEIVLRYVSYAMIAGDSSVLDDRCLNGLRETYQALGTPGTSVAVAIQKMKEASVSLANDSNG  IGDCSSLTAELGVYFDRAAVAVV
Sbjct:   30 MVAEGNKRLDIVNKINSNASAIITNSARSLFAEQPQLVQPGGNAYTNRRMAACLRDMEIVLRYVSYAMIAGDSSVLDDRCLNGLRETYQALGTPGTSVAVAIQKMKEASVSLANDSNGTPIGDCSSLTAELGVYFDRAAVAVV 172

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BLAST of Ggra422.t1 vs. uniprot
Match: N0DMB6 (Phycocyanin beta chain n=10 Tax=Florideophyceae TaxID=2806 RepID=N0DMB6_9FLOR)

HSP 1 Score: 266 bits (680), Expect = 1.740e-89
Identity = 134/143 (93.71%), Postives = 142/143 (99.30%), Query Frame = 0

Query:    1 MVSEGNKRLDIVNKINSNASAIVTNSARALFAEQPQLVQPGGNAYTSRRMAACLRDMEIVLRYVSYAMIAGDSSVLDDRCLNGLRETYQALGTPGTSVAVAIQKMKEASVSLANDSNGITIGDCSSLTAELGVYFDRAAVAVV 143
            M++EGNKRLDI+NKINSNASAIVTNSARALFAEQPQLVQPGGNAYTSRRMAACLRDMEIVLRYVSYAMIAGDSSVLDDRCLNGLRETYQALGTPGTSVAVAIQKMKEAS+SLAN++NG+T+GDCSSL AELGVYFDRAAVAVV
Sbjct:   30 MIAEGNKRLDIINKINSNASAIVTNSARALFAEQPQLVQPGGNAYTSRRMAACLRDMEIVLRYVSYAMIAGDSSVLDDRCLNGLRETYQALGTPGTSVAVAIQKMKEASISLANNTNGVTLGDCSSLIAELGVYFDRAAVAVV 172

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BLAST of Ggra422.t1 vs. uniprot
Match: A0A173FZX1 (C-phycocyanin beta chain n=1 Tax=Gastroclonium compressum TaxID=1852973 RepID=A0A173FZX1_GASCM)

HSP 1 Score: 257 bits (657), Expect = 5.570e-86
Identity = 129/143 (90.21%), Postives = 138/143 (96.50%), Query Frame = 0

Query:    1 MVSEGNKRLDIVNKINSNASAIVTNSARALFAEQPQLVQPGGNAYTSRRMAACLRDMEIVLRYVSYAMIAGDSSVLDDRCLNGLRETYQALGTPGTSVAVAIQKMKEASVSLANDSNGITIGDCSSLTAELGVYFDRAAVAVV 143
            MV+EGNKRLD+VN+INS+AS+I+TNSARALFAEQPQL QPGGNAYTSRRMAACLRDMEIVLRYVSYAM+AGDSSVLDDRCLNGLRETYQALGTPG SVAVA+QKMKEAS+SL NDSN IT GDCSSLTAELGVYFDRAAVAVV
Sbjct:   30 MVAEGNKRLDVVNRINSSASSIITNSARALFAEQPQLAQPGGNAYTSRRMAACLRDMEIVLRYVSYAMVAGDSSVLDDRCLNGLRETYQALGTPGPSVAVAVQKMKEASISLVNDSNSITPGDCSSLTAELGVYFDRAAVAVV 172

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BLAST of Ggra422.t1 vs. uniprot
Match: A0A141SCY2 (Phycocyanin beta subunit n=13 Tax=Florideophyceae TaxID=2806 RepID=A0A141SCY2_9FLOR)

HSP 1 Score: 257 bits (656), Expect = 7.910e-86
Identity = 129/143 (90.21%), Postives = 138/143 (96.50%), Query Frame = 0

Query:    1 MVSEGNKRLDIVNKINSNASAIVTNSARALFAEQPQLVQPGGNAYTSRRMAACLRDMEIVLRYVSYAMIAGDSSVLDDRCLNGLRETYQALGTPGTSVAVAIQKMKEASVSLANDSNGITIGDCSSLTAELGVYFDRAAVAVV 143
            M++EGNKRLDI+NKINSNASAIVTN+AR+LFAEQPQLVQPGGNAYTSRRMAACLRDMEIVLRYVSYAMIAGDSSVLDDRCLNGLRETYQALGTPGTSVAVAIQKMKEAS+SLAND  G+ +GDCSSL AELG YFDRAAV+VV
Sbjct:   30 MIAEGNKRLDIINKINSNASAIVTNAARSLFAEQPQLVQPGGNAYTSRRMAACLRDMEIVLRYVSYAMIAGDSSVLDDRCLNGLRETYQALGTPGTSVAVAIQKMKEASISLANDLKGVPLGDCSSLAAELGSYFDRAAVSVV 172

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BLAST of Ggra422.t1 vs. uniprot
Match: A0A1B0TIF5 (C-phycocyanin beta chain n=10 Tax=Florideophyceae TaxID=2806 RepID=A0A1B0TIF5_9FLOR)

HSP 1 Score: 255 bits (652), Expect = 3.220e-85
Identity = 128/143 (89.51%), Postives = 138/143 (96.50%), Query Frame = 0

Query:    1 MVSEGNKRLDIVNKINSNASAIVTNSARALFAEQPQLVQPGGNAYTSRRMAACLRDMEIVLRYVSYAMIAGDSSVLDDRCLNGLRETYQALGTPGTSVAVAIQKMKEASVSLANDSNGITIGDCSSLTAELGVYFDRAAVAVV 143
            MV+EGNKRLD VNKINSNASAIVTNSARALFAEQPQLVQPGGNAYTSRRMAACLRDMEIVLRYVSYAMIAGDSSVLDDRCLNGLRETYQALGTPG SVA+AIQKMKEAS++LA+D NG+ +GDCSSLT+ELG+YFDRA+ AVV
Sbjct:   30 MVAEGNKRLDTVNKINSNASAIVTNSARALFAEQPQLVQPGGNAYTSRRMAACLRDMEIVLRYVSYAMIAGDSSVLDDRCLNGLRETYQALGTPGASVAIAIQKMKEASIALASDLNGVPLGDCSSLTSELGIYFDRASSAVV 172

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BLAST of Ggra422.t1 vs. uniprot
Match: I2FJT9 (Phycocyanin beta n=6 Tax=Florideophyceae TaxID=2806 RepID=I2FJT9_PALPL)

HSP 1 Score: 255 bits (652), Expect = 3.220e-85
Identity = 128/143 (89.51%), Postives = 138/143 (96.50%), Query Frame = 0

Query:    1 MVSEGNKRLDIVNKINSNASAIVTNSARALFAEQPQLVQPGGNAYTSRRMAACLRDMEIVLRYVSYAMIAGDSSVLDDRCLNGLRETYQALGTPGTSVAVAIQKMKEASVSLANDSNGITIGDCSSLTAELGVYFDRAAVAVV 143
            MV+EG KRLD+VNKIN+NASAIVTNSARALFAEQPQLVQPGGNAYTSRRMAACLRDMEIVLRYVSY+M+AGDSSVLDDRCLNGLRETYQALGTPGTSVAVAIQKMKEASV+LAND N + +GDCS+LTAELG YFDRAA+AVV
Sbjct:   30 MVNEGKKRLDVVNKINANASAIVTNSARALFAEQPQLVQPGGNAYTSRRMAACLRDMEIVLRYVSYSMVAGDSSVLDDRCLNGLRETYQALGTPGTSVAVAIQKMKEASVALANDLNNVPLGDCSALTAELGSYFDRAAIAVV 172

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BLAST of Ggra422.t1 vs. uniprot
Match: A0A4D6WY27 (Gcyanin beta subunit n=4 Tax=Ceramiales TaxID=2802 RepID=A0A4D6WY27_9FLOR)

HSP 1 Score: 255 bits (651), Expect = 4.570e-85
Identity = 128/143 (89.51%), Postives = 135/143 (94.41%), Query Frame = 0

Query:    1 MVSEGNKRLDIVNKINSNASAIVTNSARALFAEQPQLVQPGGNAYTSRRMAACLRDMEIVLRYVSYAMIAGDSSVLDDRCLNGLRETYQALGTPGTSVAVAIQKMKEASVSLANDSNGITIGDCSSLTAELGVYFDRAAVAVV 143
            M++EGNKRLDIVNKINSNAS IVTNSARALFAEQPQLVQPGGNAYTSRRMAACLRDMEI+LRYVSYAM AGDSSVLDDRCLNGLRETYQALGTPGTSVAVA+QKMKEAS SLAND NG+ +GDCSSL +EL VYFDRAA AVV
Sbjct:   30 MINEGNKRLDIVNKINSNASTIVTNSARALFAEQPQLVQPGGNAYTSRRMAACLRDMEIILRYVSYAMTAGDSSVLDDRCLNGLRETYQALGTPGTSVAVAVQKMKEASTSLANDLNGVPLGDCSSLVSELAVYFDRAAAAVV 172

[Close]

BLAST of Ggra422.t1 vs. uniprot
Match: A0A1Z1M4K3 (Phycocyanin beta subunit n=25 Tax=Rhodymeniophycidae TaxID=2045261 RepID=A0A1Z1M4K3_OSMFI)

HSP 1 Score: 253 bits (646), Expect = 2.640e-84
Identity = 127/143 (88.81%), Postives = 135/143 (94.41%), Query Frame = 0

Query:    1 MVSEGNKRLDIVNKINSNASAIVTNSARALFAEQPQLVQPGGNAYTSRRMAACLRDMEIVLRYVSYAMIAGDSSVLDDRCLNGLRETYQALGTPGTSVAVAIQKMKEASVSLANDSNGITIGDCSSLTAELGVYFDRAAVAVV 143
            MV EGNKRLD VNKINSN+SAIVTNSARALFAEQPQLVQPGGNAYTSRRMAACLRDMEIVLRYVSYAM AGDSSVLDDRCLNGLRETYQALGTPG SVAVAIQKMKEAS+++ ND+NG+TIGDCSSL +EL +YFDRAA AVV
Sbjct:   30 MVKEGNKRLDAVNKINSNSSAIVTNSARALFAEQPQLVQPGGNAYTSRRMAACLRDMEIVLRYVSYAMTAGDSSVLDDRCLNGLRETYQALGTPGASVAVAIQKMKEASIAVVNDANGVTIGDCSSLISELSIYFDRAATAVV 172

[Close]

BLAST of Ggra422.t1 vs. uniprot
Match: A0A4D6WSD5 (Gcyanin beta subunit n=1 Tax=Crouania attenuata TaxID=42002 RepID=A0A4D6WSD5_9FLOR)

HSP 1 Score: 253 bits (645), Expect = 3.750e-84
Identity = 126/143 (88.11%), Postives = 138/143 (96.50%), Query Frame = 0

Query:    1 MVSEGNKRLDIVNKINSNASAIVTNSARALFAEQPQLVQPGGNAYTSRRMAACLRDMEIVLRYVSYAMIAGDSSVLDDRCLNGLRETYQALGTPGTSVAVAIQKMKEASVSLANDSNGITIGDCSSLTAELGVYFDRAAVAVV 143
            +VSEGNKRLDIVNKINSNASAIVTNSAR+LF EQPQLVQPGGNAYTSRRMAACLRDMEIVLRYVSY+M+AGDSSVLDDRCLNGLRETYQALGTPG SVAVAIQKMKEAS+SLA+D+NG+++GDCSSL AEL VYFDR+A +VV
Sbjct:   30 IVSEGNKRLDIVNKINSNASAIVTNSARSLFIEQPQLVQPGGNAYTSRRMAACLRDMEIVLRYVSYSMVAGDSSVLDDRCLNGLRETYQALGTPGASVAVAIQKMKEASISLASDANGVSVGDCSSLIAELSVYFDRSAASVV 172

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BLAST of Ggra422.t1 vs. uniprot
Match: A0A1C9CHU2 (Phycocyanin beta subunit n=1 Tax=Plocamium cartilagineum TaxID=31452 RepID=A0A1C9CHU2_PLOCA)

HSP 1 Score: 251 bits (642), Expect = 1.080e-83
Identity = 128/143 (89.51%), Postives = 137/143 (95.80%), Query Frame = 0

Query:    1 MVSEGNKRLDIVNKINSNASAIVTNSARALFAEQPQLVQPGGNAYTSRRMAACLRDMEIVLRYVSYAMIAGDSSVLDDRCLNGLRETYQALGTPGTSVAVAIQKMKEASVSLANDSNGITIGDCSSLTAELGVYFDRAAVAVV 143
            M+ +GNKRLDIVN+INSNASAIVTNSARALFAEQPQLVQ GGNAYTSRRMAACLRDMEIVLRYVSYAMIAGDSSVLDDRCLNGLRETYQALGTPG+SVAVAIQKMKEAS+ LANDS GI+ G+CSSL AELG+YFDRA+VAVV
Sbjct:   30 MIIDGNKRLDIVNRINSNASAIVTNSARALFAEQPQLVQAGGNAYTSRRMAACLRDMEIVLRYVSYAMIAGDSSVLDDRCLNGLRETYQALGTPGSSVAVAIQKMKEASIGLANDSTGISSGNCSSLIAELGIYFDRASVAVV 172

The following BLAST results are available for this feature:

BLAST of Ggra422.t1 vs. uniprot

BLAST of Ggra422.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Q6B8L7	8.620e-90	95.80	C-phycocyanin beta subunit n=33 Tax=Rhodymeniophyc...	[more]
N0DMB6	1.740e-89	93.71	Phycocyanin beta chain n=10 Tax=Florideophyceae Ta...	[more]
A0A173FZX1	5.570e-86	90.21	C-phycocyanin beta chain n=1 Tax=Gastroclonium com...	[more]
A0A141SCY2	7.910e-86	90.21	Phycocyanin beta subunit n=13 Tax=Florideophyceae ...	[more]
A0A1B0TIF5	3.220e-85	89.51	C-phycocyanin beta chain n=10 Tax=Florideophyceae ...	[more]
I2FJT9	3.220e-85	89.51	Phycocyanin beta n=6 Tax=Florideophyceae TaxID=280...	[more]
A0A4D6WY27	4.570e-85	89.51	Gcyanin beta subunit n=4 Tax=Ceramiales TaxID=2802...	[more]
A0A1Z1M4K3	2.640e-84	88.81	Phycocyanin beta subunit n=25 Tax=Rhodymeniophycid...	[more]
A0A4D6WSD5	3.750e-84	88.11	Gcyanin beta subunit n=1 Tax=Crouania attenuata Ta...	[more]
A0A1C9CHU2	1.080e-83	89.51	Phycocyanin beta subunit n=1 Tax=Plocamium cartila...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012128	Phycobilisome, alpha/beta subunit	PFAM	PF00502	Phycobilisome	coord: 2..140 e-value: 8.5E-51 score: 172.0
IPR012128	Phycobilisome, alpha/beta subunit	PIRSF	PIRSF000081	Phycocyanin	coord: 1..143 e-value: 9.5E-52 score: 173.1
IPR038719	Phycobilisome, alpha/beta subunit superfamily	GENE3D	1.10.490.20	Phycocyanins	coord: 1..143 e-value: 1.6E-61 score: 209.1
None	No IPR available	PANTHER	PTHR34011:SF7	C-PHYCOCYANIN BETA CHAIN	coord: 2..142
None	No IPR available	PANTHER	PTHR34011	PHYCOBILISOME 32.1 KDA LINKER POLYPEPTIDE, PHYCOCYANIN-ASSOCIATED, ROD 2-RELATED	coord: 2..142
IPR009050	Globin-like superfamily	SUPERFAMILY	46458	Globin-like	coord: 2..139

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000928_pilon	contig	tig00000928_pilon:168284..168715 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra422.t1	Ggra422.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000928_pilon 168284..168715 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra422.t1 ID=Ggra422.t1|Name=Ggra422.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=144bp
MVSEGNKRLDIVNKINSNASAIVTNSARALFAEQPQLVQPGGNAYTSRRM
AACLRDMEIVLRYVSYAMIAGDSSVLDDRCLNGLRETYQALGTPGTSVAV
AIQKMKEASVSLANDSNGITIGDCSSLTAELGVYFDRAAVAVV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012128	Phycobilisome_asu/bsu
IPR038719	Phycobilisome_asu/bsu_sf
IPR009050	Globin-like_sf