Ggra422.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra422.t1
Unique NameGgra422.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length144
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000928_piloncontigtig00000928_pilon:168284..168715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704979.1
Preferred namecpcB
PFAMsPhycobilisome
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
Evalue1.64e-78
EggNOG OGs28I0N@1|root,2SQCB@2759|Eukaryota
Descriptionprotein-chromophore linkage
COG categoryJ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra422Ggra422Gracilaria gracilis GNS1m malegenetig00000928_pilon 168284..168715 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra422.t1.start1Ggra422.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000928_pilon 168284..168286 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra422.t1.CDS1Ggra422.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000928_pilon 168284..168715 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra422.t1.exon1Ggra422.t1.exon1Gracilaria gracilis GNS1m maleexontig00000928_pilon 168284..168715 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra422.t1.stop1Ggra422.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000928_pilon 168713..168715 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra422.t1Ggra422.t1Gracilaria gracilis GNS1m malepolypeptidetig00000928_pilon 168284..168715 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra422.t1 ID=Ggra422.t1|Name=Ggra422.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=144bp
MVSEGNKRLDIVNKINSNASAIVTNSARALFAEQPQLVQPGGNAYTSRRM
AACLRDMEIVLRYVSYAMIAGDSSVLDDRCLNGLRETYQALGTPGTSVAV
AIQKMKEASVSLANDSNGITIGDCSSLTAELGVYFDRAAVAVV*
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spliced messenger RNA

>Ggra422.t1 ID=Ggra422.t1|Name=Ggra422.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=432bp|location=Sequence derived from alignment at tig00000928_pilon:168284..168715+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTCTGAAGGTAATAAAAGACTTGATATTGTTAATAAAATCAATTC
AAATGCATCTGCTATTGTTACAAATTCTGCACGTGCTTTATTTGCAGAAC
AACCGCAGCTTGTACAACCTGGAGGTAATGCATATACTAGCCGCAGAATG
GCTGCTTGTTTAAGGGATATGGAAATTGTTTTAAGATATGTTAGTTATGC
TATGATTGCTGGCGATTCAAGCGTATTAGATGATAGATGTTTAAATGGTT
TACGAGAAACATATCAAGCTTTAGGGACTCCAGGAACATCTGTTGCTGTT
GCTATACAAAAAATGAAAGAAGCATCAGTAAGTTTAGCAAATGATTCGAA
TGGAATAACTATAGGGGATTGCAGTTCTTTAACAGCTGAATTAGGGGTAT
ACTTTGATAGAGCAGCTGTTGCGGTAGTCTAA
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protein sequence of Ggra422.t1

>Ggra422.t1 ID=Ggra422.t1|Name=Ggra422.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=144bp
MVSEGNKRLDIVNKINSNASAIVTNSARALFAEQPQLVQPGGNAYTSRRM
AACLRDMEIVLRYVSYAMIAGDSSVLDDRCLNGLRETYQALGTPGTSVAV
AIQKMKEASVSLANDSNGITIGDCSSLTAELGVYFDRAAVAVV*
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mRNA from alignment at tig00000928_pilon:168284..168715+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra422.t1 ID=Ggra422.t1|Name=Ggra422.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=432bp|location=Sequence derived from alignment at tig00000928_pilon:168284..168715+ (Gracilaria gracilis GNS1m male)
ATGGTTTCTGAAGGTAATAAAAGACTTGATATTGTTAATAAAATCAATTC
AAATGCATCTGCTATTGTTACAAATTCTGCACGTGCTTTATTTGCAGAAC
AACCGCAGCTTGTACAACCTGGAGGTAATGCATATACTAGCCGCAGAATG
GCTGCTTGTTTAAGGGATATGGAAATTGTTTTAAGATATGTTAGTTATGC
TATGATTGCTGGCGATTCAAGCGTATTAGATGATAGATGTTTAAATGGTT
TACGAGAAACATATCAAGCTTTAGGGACTCCAGGAACATCTGTTGCTGTT
GCTATACAAAAAATGAAAGAAGCATCAGTAAGTTTAGCAAATGATTCGAA
TGGAATAACTATAGGGGATTGCAGTTCTTTAACAGCTGAATTAGGGGTAT
ACTTTGATAGAGCAGCTGTTGCGGTAGTCTAA
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Coding sequence (CDS) from alignment at tig00000928_pilon:168284..168715+

>Ggra422.t1 ID=Ggra422.t1|Name=Ggra422.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=432bp|location=Sequence derived from alignment at tig00000928_pilon:168284..168715+ (Gracilaria gracilis GNS1m male)
ATGGTTTCTGAAGGTAATAAAAGACTTGATATTGTTAATAAAATCAATTC
AAATGCATCTGCTATTGTTACAAATTCTGCACGTGCTTTATTTGCAGAAC
AACCGCAGCTTGTACAACCTGGAGGTAATGCATATACTAGCCGCAGAATG
GCTGCTTGTTTAAGGGATATGGAAATTGTTTTAAGATATGTTAGTTATGC
TATGATTGCTGGCGATTCAAGCGTATTAGATGATAGATGTTTAAATGGTT
TACGAGAAACATATCAAGCTTTAGGGACTCCAGGAACATCTGTTGCTGTT
GCTATACAAAAAATGAAAGAAGCATCAGTAAGTTTAGCAAATGATTCGAA
TGGAATAACTATAGGGGATTGCAGTTCTTTAACAGCTGAATTAGGGGTAT
ACTTTGATAGAGCAGCTGTTGCGGTAGTCTAA
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