Ggra4209.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4209.t1
Unique NameGgra4209.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length174
Homology
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BLAST of Ggra4209.t1 vs. uniprot
Match: A0A2V3IE34 (Mediator of RNA polymerase II transcription subunit 22 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IE34_9FLOR)

HSP 1 Score: 196 bits (497), Expect = 2.980e-61
Identity = 98/152 (64.47%), Postives = 122/152 (80.26%), Query Frame = 0 
Query:    1 MTSRSHGRAAALSLTTDPTPQRTTRTARELRESYHARLHAEIERALTAFQELVASCQLSDRASNTRAEYQTQVEAANLAAAADQLLRLVSQLKVAAVTQNVAEVKAENRALHVFMDKNSHEMLTQMLALGDTIAKTLKLLEKHYYASCTAWF 152
            MTSRSH + A L +  DPTPQRT  TA ELRE+YH RL  EI+RA+TAFQ+L+ASC++SDR SN RAEYQTQVEAANLA +ADQLLRL+S+LK+AA+TQN+ E+K+ENR + VF D+   +ML ++L L D  AKTL+LLEKHYY S T W+
Sbjct:    1 MTSRSHNQGATLPIGHDPTPQRTIPTAVELRETYHNRLDTEIDRAMTAFQDLIASCEISDRTSNARAEYQTQVEAANLANSADQLLRLISELKIAAITQNIPEIKSENRTMQVFFDQTGRKMLKEILTLRDETAKTLRLLEKHYYESSTTWY 152
The following BLAST results are available for this feature:
BLAST of Ggra4209.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IE342.980e-6164.47Mediator of RNA polymerase II transcription subuni... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009332Mediator of RNA polymerase II transcription subunit 22PFAMPF06179Med22coord: 37..134
e-value: 1.4E-8
score: 34.9
IPR009332Mediator of RNA polymerase II transcription subunit 22PANTHERPTHR12434MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 22coord: 18..148
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000880_piloncontigtig00000880_pilon:81610..82131 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4209.t1Ggra4209.t1Gracilaria gracilis GNS1m malemRNAtig00000880_pilon 81610..82131 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4209.t1 ID=Ggra4209.t1|Name=Ggra4209.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=174bp
MTSRSHGRAAALSLTTDPTPQRTTRTARELRESYHARLHAEIERALTAFQ
ELVASCQLSDRASNTRAEYQTQVEAANLAAAADQLLRLVSQLKVAAVTQN
VAEVKAENRALHVFMDKNSHEMLTQMLALGDTIAKTLKLLEKHYYASCTA
WFGGGSGGGSGGGSGGDAPAAPN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009332Med22