Ggra4209.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4209.t1
Unique NameGgra4209.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length174
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000880_piloncontigtig00000880_pilon:81610..82131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S152_8V6.1
PFAMsMed22
Max annot lvl35493|Streptophyta
KEGG koko:K15139
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0016592,GO:0031974,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0070013
Evalue6.52e-08
EggNOG OGsKOG3304@1|root,KOG3304@2759|Eukaryota,37TRX@33090|Viridiplantae,3GI8S@35493|Streptophyta
Descriptionmediator of RNA polymerase II transcription subunit
COG categoryK
BRITEko00000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4209Ggra4209Gracilaria gracilis GNS1m malegenetig00000880_pilon 81610..82131 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4209.t1.start1Ggra4209.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000880_pilon 81610..81612 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4209.t1.CDS1Ggra4209.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000880_pilon 81610..82131 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4209.t1.exon1Ggra4209.t1.exon1Gracilaria gracilis GNS1m maleexontig00000880_pilon 81610..82131 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4209.t1.stop1Ggra4209.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000880_pilon 82129..82131 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4209.t1Ggra4209.t1Gracilaria gracilis GNS1m malepolypeptidetig00000880_pilon 81610..82131 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4209.t1 ID=Ggra4209.t1|Name=Ggra4209.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=174bp
MTSRSHGRAAALSLTTDPTPQRTTRTARELRESYHARLHAEIERALTAFQ
ELVASCQLSDRASNTRAEYQTQVEAANLAAAADQLLRLVSQLKVAAVTQN
VAEVKAENRALHVFMDKNSHEMLTQMLALGDTIAKTLKLLEKHYYASCTA
WFGGGSGGGSGGGSGGDAPAAPN*
back to top

spliced messenger RNA

>Ggra4209.t1 ID=Ggra4209.t1|Name=Ggra4209.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=522bp|location=Sequence derived from alignment at tig00000880_pilon:81610..82131+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTCGCGCAGCCACGGGCGCGCGGCAGCGCTGTCGCTAACCACCGA
CCCGACGCCGCAGCGCACCACGCGCACGGCGCGCGAGCTACGCGAGAGCT
ATCACGCGCGGCTGCACGCCGAGATCGAGCGCGCGCTCACGGCGTTCCAG
GAGCTGGTGGCGTCGTGTCAGCTGAGCGACCGCGCCAGCAACACGCGCGC
CGAGTACCAGACGCAGGTGGAGGCGGCCAACCTGGCCGCCGCCGCCGACC
AGCTGCTGCGCCTCGTGTCGCAGCTCAAGGTTGCCGCCGTCACCCAGAAC
GTCGCAGAGGTCAAGGCCGAGAACCGCGCCCTGCACGTGTTCATGGACAA
GAACAGCCACGAGATGCTCACGCAGATGCTCGCGCTGGGCGACACCATCG
CAAAGACCCTCAAGCTGCTGGAGAAGCACTACTACGCCAGCTGCACCGCG
TGGTTTggcggcggcagcggcggcggcagcggcggcggcagcggcggcgA
CGCGCCCGCCGCCCCAAATTAA
back to top

protein sequence of Ggra4209.t1

>Ggra4209.t1 ID=Ggra4209.t1|Name=Ggra4209.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=174bp
MTSRSHGRAAALSLTTDPTPQRTTRTARELRESYHARLHAEIERALTAFQ
ELVASCQLSDRASNTRAEYQTQVEAANLAAAADQLLRLVSQLKVAAVTQN
VAEVKAENRALHVFMDKNSHEMLTQMLALGDTIAKTLKLLEKHYYASCTA
WFGGGSGGGSGGGSGGDAPAAPN*
back to top

mRNA from alignment at tig00000880_pilon:81610..82131+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4209.t1 ID=Ggra4209.t1|Name=Ggra4209.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=522bp|location=Sequence derived from alignment at tig00000880_pilon:81610..82131+ (Gracilaria gracilis GNS1m male)
ATGACGTCGCGCAGCCACGGGCGCGCGGCAGCGCTGTCGCTAACCACCGA
CCCGACGCCGCAGCGCACCACGCGCACGGCGCGCGAGCTACGCGAGAGCT
ATCACGCGCGGCTGCACGCCGAGATCGAGCGCGCGCTCACGGCGTTCCAG
GAGCTGGTGGCGTCGTGTCAGCTGAGCGACCGCGCCAGCAACACGCGCGC
CGAGTACCAGACGCAGGTGGAGGCGGCCAACCTGGCCGCCGCCGCCGACC
AGCTGCTGCGCCTCGTGTCGCAGCTCAAGGTTGCCGCCGTCACCCAGAAC
GTCGCAGAGGTCAAGGCCGAGAACCGCGCCCTGCACGTGTTCATGGACAA
GAACAGCCACGAGATGCTCACGCAGATGCTCGCGCTGGGCGACACCATCG
CAAAGACCCTCAAGCTGCTGGAGAAGCACTACTACGCCAGCTGCACCGCG
TGGTTTggcggcggcagcggcggcggcagcggcggcggcagcggcggcgA
CGCGCCCGCCGCCCCAAATTAA
back to top

Coding sequence (CDS) from alignment at tig00000880_pilon:81610..82131+

>Ggra4209.t1 ID=Ggra4209.t1|Name=Ggra4209.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=522bp|location=Sequence derived from alignment at tig00000880_pilon:81610..82131+ (Gracilaria gracilis GNS1m male)
ATGACGTCGCGCAGCCACGGGCGCGCGGCAGCGCTGTCGCTAACCACCGA
CCCGACGCCGCAGCGCACCACGCGCACGGCGCGCGAGCTACGCGAGAGCT
ATCACGCGCGGCTGCACGCCGAGATCGAGCGCGCGCTCACGGCGTTCCAG
GAGCTGGTGGCGTCGTGTCAGCTGAGCGACCGCGCCAGCAACACGCGCGC
CGAGTACCAGACGCAGGTGGAGGCGGCCAACCTGGCCGCCGCCGCCGACC
AGCTGCTGCGCCTCGTGTCGCAGCTCAAGGTTGCCGCCGTCACCCAGAAC
GTCGCAGAGGTCAAGGCCGAGAACCGCGCCCTGCACGTGTTCATGGACAA
GAACAGCCACGAGATGCTCACGCAGATGCTCGCGCTGGGCGACACCATCG
CAAAGACCCTCAAGCTGCTGGAGAAGCACTACTACGCCAGCTGCACCGCG
TGGTTTggcggcggcagcggcggcggcagcggcggcggcagcggcggcgA
CGCGCCCGCCGCCCCAAATTAA
back to top