Ggra4207.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4207.t1
Unique NameGgra4207.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length475
Homology
BLAST of Ggra4207.t1 vs. uniprot
Match: A0A2V3IIR6 (Protein PAM68, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIR6_9FLOR)

HSP 1 Score: 226 bits (576), Expect = 1.940e-68
Identity = 107/149 (71.81%), Postives = 129/149 (86.58%), Query Frame = 0
Query:  324 PFVPRGTTLRQEYERKGVIEPTFNPDAGTLPEIVANRMLRRIIGFGGVPFSIFFLFFAAYFVLKYKYDITVLPVVVAYSTLGTIGLATVGITYGIFSSSWDEEVEGSFMGWEQVSKNFMHAKDGLLGAREREIRDEELVRLSEMVDKDG 472
            PF PRG TL+ EYER+G+IEP+ +PDAGTLPEIVANRMLRRI+GFGGVPF   F+FF AYF+LKYKYDITVLPVVVAY+TLGTI  AT GITYGIFSSSWDE++EGSF+GWE+ + NF+ AKDGL GAR+RE+++EEL R+ E+ + D 
Sbjct:   50 PFTPRGPTLKGEYERRGLIEPSSSPDAGTLPEIVANRMLRRILGFGGVPFLGLFMFFGAYFLLKYKYDITVLPVVVAYTTLGTIAFATFGITYGIFSSSWDEDIEGSFLGWEEATTNFIRAKDGLFGARQRELKEEELARIDELSENDS 198          
BLAST of Ggra4207.t1 vs. uniprot
Match: A0A5J4YY98 (Protein PAM68, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YY98_PORPP)

HSP 1 Score: 106 bits (265), Expect = 8.190e-23
Identity = 63/153 (41.18%), Postives = 88/153 (57.52%), Query Frame = 0
Query:  303 QNTDKFANDGVRSTDAGGSSEPFVPRGTTLRQEYERKGVIEPTFNPDAGTLPEIVANRMLRRIIGFGGVPFSIFFLFFAAYFVLKYKYDITVLPVVVAYSTLGTIGLATVGITYGIFSSSWDEEVEGSFMGWEQVSKNFMHAKDGLLGARERE 455
            Q +D  A D   S+     ++ F PRG T+ ++ +  G + P    D+ +LPEIVANRM +R+I    VPF      F   ++L  K DI VLP +VA STLGT GLA  G+TYGI S+SWD + EGSF G+ +   N +   + L   ++RE
Sbjct:   71 QKSDAGAEDSAESSSVEEKAQGFQPRGLTMSKQVDEYGFVRPQPGADS-SLPEIVANRMGKRMIVLFSVPFFTGIGGFVTVYLLSIKSDIVVLPSLVATSTLGTFGLALTGLTYGIMSASWDPDEEGSFWGFTEFKTNLLRTVEALSLQKKRE 222          
BLAST of Ggra4207.t1 vs. uniprot
Match: A0A7J7IE40 (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IE40_9RHOD)

HSP 1 Score: 107 bits (268), Expect = 9.370e-23
Identity = 56/120 (46.67%), Postives = 77/120 (64.17%), Query Frame = 0
Query:  344 PTFNPDAG----TLPEIVANRMLRRIIGFGGVPFSIFFLFFAAYFVLKYKYDITVLPVVVAYSTLGTIGLATVGITYGIFSSSWDEEVEGSFMGWEQVSKNFMHAKDGLLGAREREIRDE 459
            P    D+G     LP +VA RM RR++ F GVPF +    F  +F+LKY+YDI V+P VV Y+TLG  GL+ +G+TYGI S+SWD    G+ +GWE+  +NF++  DG   AR RE  D+
Sbjct:  139 PAHGVDSGPVERALPLVVAERMQRRMVVFAGVPFLLGISAFGVFFLLKYRYDIVVIPPVVGYATLGLFGLSLIGLTYGIMSASWDPGRVGTPLGWEEAQRNFLNTVDGFWRARMRERLDD 258          
BLAST of Ggra4207.t1 vs. uniprot
Match: R1FQ09 (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FQ09_EMIHU)

HSP 1 Score: 97.1 bits (240), Expect = 4.260e-19
Identity = 62/164 (37.80%), Postives = 91/164 (55.49%), Query Frame = 0
Query:  318 AGGSSEPFVPRG-TTLRQEYERKGVIEPTFNPDAGTLPEIVANRMLRRIIGFGGVP-FSIFFLFFAAYFVLKYKYDITVLPVVVAYSTLGTIGLATVGITYGIFSSSWDEEVEGSFMGWEQVSKNFMHAKDGLLGAR--------EREIRDEELVRLSEMVDKD 471
            A G+      RG   LRQ       + P  +P AG +PE+V+NRML R++ F G+P F  F +F  AY+    + D+ V P V+AY+T     L+  GIT+G+ S+SWDEE EGS +G EQV +N    +DG+   R        E E  D+ ++   EM+++D
Sbjct:   84 AAGADPDEARRGRAALRQTAYTAEEMSPV-DPSAGVMPEVVSNRMLSRVVPFAGLPVFGSFLVFVGAYYA-NTQLDLDVPPQVIAYATQACFALSFAGITWGVLSTSWDEETEGSLLGTEQVGRNVAMMRDGMARGRAAAEEENAEIEAADDGVLMSREMLERD 245          
BLAST of Ggra4207.t1 vs. uniprot
Match: A0A7S2STX2 (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STX2_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 5.000e-19
Identity = 57/137 (41.61%), Postives = 75/137 (54.74%), Query Frame = 0
Query:  332 LRQEYERKGV-----------IEPTF--NPDAGTLPEIVANRMLRRIIGFGGVPFSIFFLFFAAYFVLKYKYDITVLPVVVAYSTLGTIGLATVGITYGIFSSSWDEEVEGSFMGWEQVSKNFMHAKDGLLGARERE 455
            LR + ERKG+           +E     NPDAG +PE+VA RML R++    VP       F  +++   K+D+ + P VVAY+T     L   G+TYGI S+SWD EVEGSF+G E+V  N     DGL  A E E
Sbjct:   86 LRLQSERKGMEVQRRLEDMKEVEKVLRENPDAGVIPEVVAQRMLGRMLPLAAVPIFGGIALFVGFYIAATKWDLEIQPTVVAYATTAPWLLGLAGLTYGILSASWDPEVEGSFLGTEEVKLNLSRIADGLRRAGENE 222          
BLAST of Ggra4207.t1 vs. uniprot
Match: M2Y1W9 (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y1W9_GALSU)

HSP 1 Score: 90.1 bits (222), Expect = 3.310e-17
Identity = 49/117 (41.88%), Postives = 72/117 (61.54%), Query Frame = 0
Query:  334 QEYERKGVIEPTFNPD---AGTLPEIVANRMLRRIIGFGGVPFSIFFLFFAAYFVLKYKYDITVLPVVVAYSTLGTIGLATVGITYGIFSSSWDEEVEGSFMGWEQVSKNFMHAKDG 447
            +E +     EP    +   +G+LP IV++RM +R++    VPF +F +FFA+ FV K ++DITV+P +VAYS+L  I      ++YGIFS+SWD E EGSF GW +   N     +G
Sbjct:   76 EEEQTNNYFEPGSKDNLHNSGSLPPIVSDRMGKRMLYASSVPFMLFIVFFASVFVAKLQFDITVIPSLVAYSSLLLILATMAALSYGIFSASWDVEQEGSFWGWNEFRVNVGRTLEG 192          
BLAST of Ggra4207.t1 vs. uniprot
Match: A0A6H5L0S3 (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0S3_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 5.110e-16
Identity = 47/108 (43.52%), Postives = 71/108 (65.74%), Query Frame = 0
Query:  347 NPDAGTLPEIVANRMLRRIIGFGGVPFSIFFLFFAAYFVLKYKYDITVLPVVVAYSTLGTIGLATVGITYGIFSSSWDEEVEGSFMGWEQVSKNFMHAKDGLLGARER 454
            +PDAG++PEIV+NRML R++ F  +P       F A +VL +KYD T+   +VAY+T     +A  GITY I S+SWDE+ EG+F G+++  +NF +  +GL  + +R
Sbjct:  181 DPDAGSIPEIVSNRMLSRMVPFFLLPALGGVGVFVAVYVLSHKYDYTIPAYIVAYATQAPFFVALAGITYAIMSASWDEDREGTFFGFDEAKRNFGNIVEGLRRSSDR 288          
BLAST of Ggra4207.t1 vs. uniprot
Match: A0A8J5XTZ9 (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XTZ9_DIALT)

HSP 1 Score: 85.5 bits (210), Expect = 1.330e-15
Identity = 47/119 (39.50%), Postives = 68/119 (57.14%), Query Frame = 0
Query:  332 LRQEYERKGVIEPTFNPDAGTLPEIVANRMLRRIIGFGGVPFSIFFLFFAAYFVLKYKYDITVLPVVVAYSTLGTIGLATVGITYGIFSSSWDEEVEGSFMGWEQVSKNFMHAKDGLLG 450
            L +E ER+ + +   +     +PE+V +RML+R+I F GVP       FAA+ +    +D T+ P  VA +T   + L  VGITYG  S+SWDE+ EGS +G+E+V KN       L G
Sbjct:   77 LEEEREREKMEQYIVDEGLDVMPEVVGDRMLKRMIFFLGVPLFGGIAAFAAFIIAARNFDTTIRPTTVALTTQAILALGVVGITYGPLSASWDEDREGSLLGFEEVGKNLESVLQSLRG 195          
BLAST of Ggra4207.t1 vs. uniprot
Match: D8LCB7 (All0748 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCB7_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.330e-15
Identity = 46/108 (42.59%), Postives = 70/108 (64.81%), Query Frame = 0
Query:  347 NPDAGTLPEIVANRMLRRIIGFGGVPFSIFFLFFAAYFVLKYKYDITVLPVVVAYSTLGTIGLATVGITYGIFSSSWDEEVEGSFMGWEQVSKNFMHAKDGLLGARER 454
            +PDAG++PEIV+NRML R++ F  +P       F   +VL +KYD T+   +VAY+T     +A  GITY I S+SWDE+ EG+F G+++  +NF +  +GL  + +R
Sbjct:  181 DPDAGSIPEIVSNRMLSRMVPFFVLPALGGVGVFVTVYVLSHKYDYTIPAYIVAYATQAPFFVALAGITYAIMSASWDEDREGTFFGFDEAKRNFGNIVEGLRRSSDR 288          
BLAST of Ggra4207.t1 vs. uniprot
Match: A0A835Z7Y5 (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Y5_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.750e-15
Identity = 50/124 (40.32%), Postives = 75/124 (60.48%), Query Frame = 0
Query:  347 NPDAGTLPEIVANRMLRRIIGFGGVPFSIFFLFFAAYFVLKYKYDITVLPVVVAYSTLGTIGLATVGITYGIFSSSWDEEVEGSFMGWEQVSKNFMHAKDGLLGAREREIRDEELVRLSEMVDK 470
            NPDAG +P++VANRML R+I F  +P       F  +FVL  +YD +  P +VA++T     ++ VGITY I S+SWD E EGS +G+++   N     +GL  + ER+  DE+L    + V++
Sbjct:  130 NPDAGVIPDLVANRMLARMIPFFVLPVLAGVGVFVYFFVLAKRYDTSFQPGMVAFATQAPFAISLVGITYAILSASWDPEREGSALGFDEFRSNAGAILEGLRRSSERQELDEQLEEQEKRVNR 253          
The following BLAST results are available for this feature:
BLAST of Ggra4207.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IIR61.940e-6871.81Protein PAM68, chloroplastic n=1 Tax=Gracilariopsi... [more]
A0A5J4YY988.190e-2341.18Protein PAM68, chloroplastic n=1 Tax=Porphyridium ... [more]
A0A7J7IE409.370e-2346.67Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
R1FQ094.260e-1937.80Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A7S2STX25.000e-1941.61Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
M2Y1W93.310e-1741.88Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
A0A6H5L0S35.110e-1643.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J5XTZ91.330e-1539.50Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
D8LCB71.330e-1542.59All0748 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A835Z7Y52.750e-1540.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 144..164
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 181..200
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 284..314
NoneNo IPR availablePANTHERPTHR34575:SF1PROTEIN PAM68, CHLOROPLASTICcoord: 280..452
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 387..397
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 398..419
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..364
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 420..474
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 365..386
NoneNo IPR availableTMHMMTMhelixcoord: 398..420
NoneNo IPR availableTMHMMTMhelixcoord: 364..386
IPR021855PAM68-likePFAMPF11947DUF3464coord: 323..444
e-value: 5.0E-28
score: 97.7
IPR021855PAM68-likePANTHERPTHR34575PROTEIN PAM68, CHLOROPLASTICcoord: 280..452

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000880_piloncontigtig00000880_pilon:76827..78450 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4207.t1Ggra4207.t1Gracilaria gracilis GNS1m malemRNAtig00000880_pilon 76827..78450 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4207.t1 ID=Ggra4207.t1|Name=Ggra4207.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=475bp
MLTSFQELLDNNERFVTDFQDMSIANDLKDVHIIISWVEDVVKGEAVSLC
DLISAYWARCATSALEDIQRFKGCSALMPVVRYGNRLVHKLESATSVATA
FHERLDGASDAEKLWAAKWIGTGSRNVQSVEITECSGHCLACCAKRLDRR
VKEARLALEEFAAASNACIRQLRRGVNKTRGGNKGRQSGFKRRRSERFGA
THTKRATPTQILSGGRRRQLALNEESVENAYVVLNGDAQGEGRGLELGFR
FKMARQAFVLSTPLARVTNRSNTATCERSALVMKAKGSRSKRKERNANKS
SKQNTDKFANDGVRSTDAGGSSEPFVPRGTTLRQEYERKGVIEPTFNPDA
GTLPEIVANRMLRRIIGFGGVPFSIFFLFFAAYFVLKYKYDITVLPVVVA
YSTLGTIGLATVGITYGIFSSSWDEEVEGSFMGWEQVSKNFMHAKDGLLG
AREREIRDEELVRLSEMVDKDGQD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021855PAM68-like