Ggra4207.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4207.t1
Unique NameGgra4207.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length475
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000880_piloncontigtig00000880_pilon:76827..78450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CML309CT
PFAMsDUF3464
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue1.31e-22
EggNOG OGs2AEZ6@1|root,2RXKE@2759|Eukaryota
DescriptionProtein of unknown function (DUF3464)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4207Ggra4207Gracilaria gracilis GNS1m malegenetig00000880_pilon 76827..78450 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4207.t1Ggra4207.t1Gracilaria gracilis GNS1m malepolypeptidetig00000880_pilon 76827..78450 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4207.t1.start1Ggra4207.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000880_pilon 76827..76829 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4207.t1.CDS1Ggra4207.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000880_pilon 76827..77451 +
Ggra4207.t1.CDS2Ggra4207.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000880_pilon 77651..78450 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4207.t1.exon1Ggra4207.t1.exon1Gracilaria gracilis GNS1m maleexontig00000880_pilon 76827..77451 +
Ggra4207.t1.exon2Ggra4207.t1.exon2Gracilaria gracilis GNS1m maleexontig00000880_pilon 77651..78450 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4207.t1.intron1Ggra4207.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000880_pilon 77452..77650 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4207.t1.stop1Ggra4207.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000880_pilon 78448..78450 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4207.t1 ID=Ggra4207.t1|Name=Ggra4207.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=475bp
MLTSFQELLDNNERFVTDFQDMSIANDLKDVHIIISWVEDVVKGEAVSLC
DLISAYWARCATSALEDIQRFKGCSALMPVVRYGNRLVHKLESATSVATA
FHERLDGASDAEKLWAAKWIGTGSRNVQSVEITECSGHCLACCAKRLDRR
VKEARLALEEFAAASNACIRQLRRGVNKTRGGNKGRQSGFKRRRSERFGA
THTKRATPTQILSGGRRRQLALNEESVENAYVVLNGDAQGEGRGLELGFR
FKMARQAFVLSTPLARVTNRSNTATCERSALVMKAKGSRSKRKERNANKS
SKQNTDKFANDGVRSTDAGGSSEPFVPRGTTLRQEYERKGVIEPTFNPDA
GTLPEIVANRMLRRIIGFGGVPFSIFFLFFAAYFVLKYKYDITVLPVVVA
YSTLGTIGLATVGITYGIFSSSWDEEVEGSFMGWEQVSKNFMHAKDGLLG
AREREIRDEELVRLSEMVDKDGQD*
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spliced messenger RNA

>Ggra4207.t1 ID=Ggra4207.t1|Name=Ggra4207.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1425bp|location=Sequence derived from alignment at tig00000880_pilon:76827..78450+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTAACATCATTCCAAGAGCTGTTGGATAACAATGAAAGATTCGTGAC
AGATTTCCAAGACATGAGTATTGCAAACGATCTAAAAGACGTTCACATAA
TCATATCGTGGGTTGAGGACGTCGTGAAAGGGGAAGCAGTATCGCTGTGT
GACCTCATAAGCGCGTACTGGGCGAGGTGCGCCACCTCGGCGCTTGAGGA
CATACAGCGTTTCAAGGGATGTTCAGCCCTTATGCCTGTGGTGCGCTACG
GGAACCGCCTCGTGCACAAGTTGGAAAGCGCGACAAGCGTAGCCACGGCA
TTCCACGAACGATTAGACGGCGCATCGGACGCTGAGAAGTTGTGGGCGGC
CAAGTGGATCGGAACAGGCTCGCGCAACGTTCAGTCAGTGGAAATCACGG
AGTGCAGCGGACACTGCTTGGCATGCTGCGCCAAGCGGCTGGACCGCCGT
GTAAAGGAGGCCAGGCTTGCGCTGGAGGAATTTGCGGCCGCGAGTAACGC
GTGCATCCGCCAGTTGCGGCGGGGGGTCAACAAGACACGGGGCGGCAATA
AGGGCAGGCAGTCTGGCTTCAAACGGAGAAGATCAGAGAGGTTTGGCGCA
ACTCACACGAAACGCGCAACACCCACACAGATTTTATCGGGGGGACGAAG
AAGACAGCTCGCGCTCAACGAAGAAAGCGTCGAAAACGCGTACGTTGTTC
TGAACGGCGACGCGCAAGGAGAAGGGCGTGGATTGGAACTCGGGTTTCGG
TTCAAAATGGCAAGGCAGGCGTTTGTTTTGTCAACGCCGTTGGCGCGGGT
GACAAACAGAAGCAACACAGCTACGTGTGAAAGAAGTGCGCTTGTAATGA
AAGCGAAGGGGTCCAGAAGCAAACGGAAGGAGAGAAACGCAAACAAGTCA
AGCAAACAAAACACAGACAAGTTTGCAAACGACGGCGTGCGTTCCACCGA
TGCCGGCGGGAGCTCTGAACCGTTTGTTCCGCGCGGGACTACGCTTCGAC
AAGAATACGAGAGAAAAGGGGTGATTGAGCCCACGTTCAACCCCGATGCT
GGAACACTACCTGAAATTGTTGCGAATAGAATGCTGCGGCGTATCATTGG
GTTTGGCGGCGTGCCGTTCAGCATCTTCTTTTTGTTCTTTGCGGCGTATT
TCGTGCTCAAGTACAAGTACGACATTACGGTACTGCCCGTTGTTGTGGCG
TATTCAACACTGGGTACAATCGGGCTGGCTACGGTTGGAATCACGTATGG
GATCTTTTCGAGCAGCTGGGATGAGGAGGTGGAAGGAAGCTTTATGGGAT
GGGAGCAGGTGTCAAAGAACTTTATGCACGCAAAAGACGGACTGCTTGGG
GCTCGTGAACGCGAAATTAGGGACGAGGAGCTTGTGAGGTTGAGCGAAAT
GGTGGACAAAGATGGGCAAGATTGA
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protein sequence of Ggra4207.t1

>Ggra4207.t1 ID=Ggra4207.t1|Name=Ggra4207.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=475bp
MLTSFQELLDNNERFVTDFQDMSIANDLKDVHIIISWVEDVVKGEAVSLC
DLISAYWARCATSALEDIQRFKGCSALMPVVRYGNRLVHKLESATSVATA
FHERLDGASDAEKLWAAKWIGTGSRNVQSVEITECSGHCLACCAKRLDRR
VKEARLALEEFAAASNACIRQLRRGVNKTRGGNKGRQSGFKRRRSERFGA
THTKRATPTQILSGGRRRQLALNEESVENAYVVLNGDAQGEGRGLELGFR
FKMARQAFVLSTPLARVTNRSNTATCERSALVMKAKGSRSKRKERNANKS
SKQNTDKFANDGVRSTDAGGSSEPFVPRGTTLRQEYERKGVIEPTFNPDA
GTLPEIVANRMLRRIIGFGGVPFSIFFLFFAAYFVLKYKYDITVLPVVVA
YSTLGTIGLATVGITYGIFSSSWDEEVEGSFMGWEQVSKNFMHAKDGLLG
AREREIRDEELVRLSEMVDKDGQD*
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mRNA from alignment at tig00000880_pilon:76827..78450+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4207.t1 ID=Ggra4207.t1|Name=Ggra4207.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1624bp|location=Sequence derived from alignment at tig00000880_pilon:76827..78450+ (Gracilaria gracilis GNS1m male)
ATGCTAACATCATTCCAAGAGCTGTTGGATAACAATGAAAGATTCGTGAC
AGATTTCCAAGACATGAGTATTGCAAACGATCTAAAAGACGTTCACATAA
TCATATCGTGGGTTGAGGACGTCGTGAAAGGGGAAGCAGTATCGCTGTGT
GACCTCATAAGCGCGTACTGGGCGAGGTGCGCCACCTCGGCGCTTGAGGA
CATACAGCGTTTCAAGGGATGTTCAGCCCTTATGCCTGTGGTGCGCTACG
GGAACCGCCTCGTGCACAAGTTGGAAAGCGCGACAAGCGTAGCCACGGCA
TTCCACGAACGATTAGACGGCGCATCGGACGCTGAGAAGTTGTGGGCGGC
CAAGTGGATCGGAACAGGCTCGCGCAACGTTCAGTCAGTGGAAATCACGG
AGTGCAGCGGACACTGCTTGGCATGCTGCGCCAAGCGGCTGGACCGCCGT
GTAAAGGAGGCCAGGCTTGCGCTGGAGGAATTTGCGGCCGCGAGTAACGC
GTGCATCCGCCAGTTGCGGCGGGGGGTCAACAAGACACGGGGCGGCAATA
AGGGCAGGCAGTCTGGCTTCAAACGGAGAAGATCAGAGAGGTTTGGCGCA
ACTCACACGAAACGCGCAACACCCAGTTTGCTAGTGAAGCGATGTGTTGG
TGGCGATTCGACCAACGCTTCCAAATCGTGTTGGCGTGATGAGTGAAATT
GAAATGTTCGAAAACGGTTGATCTCGCACGGCTGCATTTTCTTATACGAG
CTCGCTGTTTTATTTGGGTGACGATTCTCGCGCTACGGAACGAAGGCAGT
CTTTTTGTTCATGTGTGCAATCAGCACAGATTTTATCGGGGGGACGAAGA
AGACAGCTCGCGCTCAACGAAGAAAGCGTCGAAAACGCGTACGTTGTTCT
GAACGGCGACGCGCAAGGAGAAGGGCGTGGATTGGAACTCGGGTTTCGGT
TCAAAATGGCAAGGCAGGCGTTTGTTTTGTCAACGCCGTTGGCGCGGGTG
ACAAACAGAAGCAACACAGCTACGTGTGAAAGAAGTGCGCTTGTAATGAA
AGCGAAGGGGTCCAGAAGCAAACGGAAGGAGAGAAACGCAAACAAGTCAA
GCAAACAAAACACAGACAAGTTTGCAAACGACGGCGTGCGTTCCACCGAT
GCCGGCGGGAGCTCTGAACCGTTTGTTCCGCGCGGGACTACGCTTCGACA
AGAATACGAGAGAAAAGGGGTGATTGAGCCCACGTTCAACCCCGATGCTG
GAACACTACCTGAAATTGTTGCGAATAGAATGCTGCGGCGTATCATTGGG
TTTGGCGGCGTGCCGTTCAGCATCTTCTTTTTGTTCTTTGCGGCGTATTT
CGTGCTCAAGTACAAGTACGACATTACGGTACTGCCCGTTGTTGTGGCGT
ATTCAACACTGGGTACAATCGGGCTGGCTACGGTTGGAATCACGTATGGG
ATCTTTTCGAGCAGCTGGGATGAGGAGGTGGAAGGAAGCTTTATGGGATG
GGAGCAGGTGTCAAAGAACTTTATGCACGCAAAAGACGGACTGCTTGGGG
CTCGTGAACGCGAAATTAGGGACGAGGAGCTTGTGAGGTTGAGCGAAATG
GTGGACAAAGATGGGCAAGATTGA
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Coding sequence (CDS) from alignment at tig00000880_pilon:76827..78450+

>Ggra4207.t1 ID=Ggra4207.t1|Name=Ggra4207.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1425bp|location=Sequence derived from alignment at tig00000880_pilon:76827..78450+ (Gracilaria gracilis GNS1m male)
ATGCTAACATCATTCCAAGAGCTGTTGGATAACAATGAAAGATTCGTGAC
AGATTTCCAAGACATGAGTATTGCAAACGATCTAAAAGACGTTCACATAA
TCATATCGTGGGTTGAGGACGTCGTGAAAGGGGAAGCAGTATCGCTGTGT
GACCTCATAAGCGCGTACTGGGCGAGGTGCGCCACCTCGGCGCTTGAGGA
CATACAGCGTTTCAAGGGATGTTCAGCCCTTATGCCTGTGGTGCGCTACG
GGAACCGCCTCGTGCACAAGTTGGAAAGCGCGACAAGCGTAGCCACGGCA
TTCCACGAACGATTAGACGGCGCATCGGACGCTGAGAAGTTGTGGGCGGC
CAAGTGGATCGGAACAGGCTCGCGCAACGTTCAGTCAGTGGAAATCACGG
AGTGCAGCGGACACTGCTTGGCATGCTGCGCCAAGCGGCTGGACCGCCGT
GTAAAGGAGGCCAGGCTTGCGCTGGAGGAATTTGCGGCCGCGAGTAACGC
GTGCATCCGCCAGTTGCGGCGGGGGGTCAACAAGACACGGGGCGGCAATA
AGGGCAGGCAGTCTGGCTTCAAACGGAGAAGATCAGAGAGGTTTGGCGCA
ACTCACACGAAACGCGCAACACCCACACAGATTTTATCGGGGGGACGAAG
AAGACAGCTCGCGCTCAACGAAGAAAGCGTCGAAAACGCGTACGTTGTTC
TGAACGGCGACGCGCAAGGAGAAGGGCGTGGATTGGAACTCGGGTTTCGG
TTCAAAATGGCAAGGCAGGCGTTTGTTTTGTCAACGCCGTTGGCGCGGGT
GACAAACAGAAGCAACACAGCTACGTGTGAAAGAAGTGCGCTTGTAATGA
AAGCGAAGGGGTCCAGAAGCAAACGGAAGGAGAGAAACGCAAACAAGTCA
AGCAAACAAAACACAGACAAGTTTGCAAACGACGGCGTGCGTTCCACCGA
TGCCGGCGGGAGCTCTGAACCGTTTGTTCCGCGCGGGACTACGCTTCGAC
AAGAATACGAGAGAAAAGGGGTGATTGAGCCCACGTTCAACCCCGATGCT
GGAACACTACCTGAAATTGTTGCGAATAGAATGCTGCGGCGTATCATTGG
GTTTGGCGGCGTGCCGTTCAGCATCTTCTTTTTGTTCTTTGCGGCGTATT
TCGTGCTCAAGTACAAGTACGACATTACGGTACTGCCCGTTGTTGTGGCG
TATTCAACACTGGGTACAATCGGGCTGGCTACGGTTGGAATCACGTATGG
GATCTTTTCGAGCAGCTGGGATGAGGAGGTGGAAGGAAGCTTTATGGGAT
GGGAGCAGGTGTCAAAGAACTTTATGCACGCAAAAGACGGACTGCTTGGG
GCTCGTGAACGCGAAATTAGGGACGAGGAGCTTGTGAGGTTGAGCGAAAT
GGTGGACAAAGATGGGCAAGATTGA
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