Ggra420.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra420.t1
Unique Name	Ggra420.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	298

Homology

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BLAST of Ggra420.t1 vs. uniprot
Match: Q6B8N8 (CfxQ protein homolog n=75 Tax=Florideophyceae TaxID=2806 RepID=Q6B8N8_GRATL)

HSP 1 Score: 295 bits (756), Expect = 1.680e-96
Identity = 146/154 (94.81%), Postives = 152/154 (98.70%), Query Frame = 0

Query:    1 MADILHRLDYIRRGHLLTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRVTNHVDFPDYTAEELLAIAKLMLEEQQYRFAPEADEVLLEYAGRRI 154
            MADIL+RL YIRR +L+TVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRVTNHV+FPDYTAEELLAIAKLMLEEQQYRFAPEAD+VLLEYAGRR+
Sbjct:   98 MADILNRLGYIRRSNLMTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRVTNHVNFPDYTAEELLAIAKLMLEEQQYRFAPEADKVLLEYAGRRM 251

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BLAST of Ggra420.t1 vs. uniprot
Match: A0A1C9CAY5 (Putative rubisco expression protein n=5 Tax=Florideophyceae TaxID=2806 RepID=A0A1C9CAY5_9FLOR)

HSP 1 Score: 293 bits (751), Expect = 8.720e-96
Identity = 144/154 (93.51%), Postives = 151/154 (98.05%), Query Frame = 0

Query:    1 MADILHRLDYIRRGHLLTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRVTNHVDFPDYTAEELLAIAKLMLEEQQYRFAPEADEVLLEYAGRRI 154
            MADIL+RL YIRRGHL+TVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQRDDLVVIFAGY+DRM+KFYESNPGLSSRVTNHVDFPDYT++ELL IAKLMLEEQQYRFAPEADEVLLEYA RR+
Sbjct:   87 MADILNRLGYIRRGHLMTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQRDDLVVIFAGYRDRMEKFYESNPGLSSRVTNHVDFPDYTSKELLQIAKLMLEEQQYRFAPEADEVLLEYAERRM 240

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BLAST of Ggra420.t1 vs. uniprot
Match: A0A1Z1MBX2 (Rubisco expression protein n=2 Tax=Rhodomelaceae TaxID=2803 RepID=A0A1Z1MBX2_9FLOR)

HSP 1 Score: 292 bits (747), Expect = 2.700e-95
Identity = 142/154 (92.21%), Postives = 151/154 (98.05%), Query Frame = 0

Query:    1 MADILHRLDYIRRGHLLTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRVTNHVDFPDYTAEELLAIAKLMLEEQQYRFAPEADEVLLEYAGRRI 154
            MADILHRL+YIR+GHLLTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQRDDLVVIFAGYK++MDKFYESNPGLSSRVTNHVDFPDYTAEELL IAKLMLEEQQY+FA +AD+VLL+YA RR+
Sbjct:   87 MADILHRLNYIRKGHLLTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQRDDLVVIFAGYKEKMDKFYESNPGLSSRVTNHVDFPDYTAEELLEIAKLMLEEQQYKFANDADQVLLDYANRRM 240

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BLAST of Ggra420.t1 vs. uniprot
Match: A0A1C8XSA0 (CfxQ-like protein n=27 Tax=Ceramiales TaxID=2802 RepID=A0A1C8XSA0_9FLOR)

HSP 1 Score: 291 bits (745), Expect = 5.610e-95
Identity = 143/154 (92.86%), Postives = 149/154 (96.75%), Query Frame = 0

Query:    1 MADILHRLDYIRRGHLLTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRVTNHVDFPDYTAEELLAIAKLMLEEQQYRFAPEADEVLLEYAGRRI 154
            MADILHRL YIR+GHLLTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQRDDLVVIFAGYK++MDKFYESNPGLSSRVTNHVDFPDYTAEELL IAKLMLEEQQY+FA +AD VLLEYA RR+
Sbjct:   87 MADILHRLGYIRKGHLLTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQRDDLVVIFAGYKEKMDKFYESNPGLSSRVTNHVDFPDYTAEELLQIAKLMLEEQQYKFANDADTVLLEYANRRM 240

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BLAST of Ggra420.t1 vs. uniprot
Match: A0A0B5W5V0 (CfxQ-like protein n=23 Tax=Ceramiales TaxID=2802 RepID=A0A0B5W5V0_9FLOR)

HSP 1 Score: 290 bits (741), Expect = 2.190e-94
Identity = 141/154 (91.56%), Postives = 150/154 (97.40%), Query Frame = 0

Query:    1 MADILHRLDYIRRGHLLTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRVTNHVDFPDYTAEELLAIAKLMLEEQQYRFAPEADEVLLEYAGRRI 154
            MADILHRL YIR+GHLLTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQRDD+VVIFAGYKD+MDKFYESNPGLSSRVTNHVDFP+YTA+ELL IAKLMLEEQQY+FA +AD+VLLEYA RR+
Sbjct:   87 MADILHRLKYIRKGHLLTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQRDDIVVIFAGYKDKMDKFYESNPGLSSRVTNHVDFPNYTAKELLQIAKLMLEEQQYKFADDADQVLLEYADRRM 240

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BLAST of Ggra420.t1 vs. uniprot
Match: A0A1G4NTC7 (Rubisco expression protein n=15 Tax=Nemaliales TaxID=2807 RepID=A0A1G4NTC7_9FLOR)

HSP 1 Score: 289 bits (740), Expect = 3.540e-94
Identity = 142/154 (92.21%), Postives = 148/154 (96.10%), Query Frame = 0

Query:    1 MADILHRLDYIRRGHLLTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRVTNHVDFPDYTAEELLAIAKLMLEEQQYRFAPEADEVLLEYAGRRI 154
            MADILHRL+YIR+GHLLTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFIDEAYYLYK DNERDYGAEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRVTNHVDFPDYTAEELL IAKLM++EQQY FAP+AD VLLEY  RR+
Sbjct:   87 MADILHRLEYIRKGHLLTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFIDEAYYLYKADNERDYGAEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRVTNHVDFPDYTAEELLQIAKLMIQEQQYCFAPDADIVLLEYTNRRM 240

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BLAST of Ggra420.t1 vs. uniprot
Match: A0A4D6WUJ1 (Rubisco expression protein n=3 Tax=Ceramiales TaxID=2802 RepID=A0A4D6WUJ1_9FLOR)

HSP 1 Score: 286 bits (733), Expect = 4.070e-93
Identity = 139/154 (90.26%), Postives = 148/154 (96.10%), Query Frame = 0

Query:    1 MADILHRLDYIRRGHLLTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRVTNHVDFPDYTAEELLAIAKLMLEEQQYRFAPEADEVLLEYAGRRI 154
            MADILH+L YIR+GHL+TVTRDDLVGQYIGHTAPKTKEVLKQA+GGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQRDDLVVIFAGYKD+MDKFYESNPGLSSRVTNHVDFPDYT EELL IAKLMLEEQQY+FA  AD++LLEYA RR+
Sbjct:   89 MADILHKLGYIRKGHLMTVTRDDLVGQYIGHTAPKTKEVLKQAIGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQRDDLVVIFAGYKDKMDKFYESNPGLSSRVTNHVDFPDYTPEELLQIAKLMLEEQQYKFANNADDILLEYAERRM 242

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BLAST of Ggra420.t1 vs. uniprot
Match: A0A4D6WZB4 (Rubisco expression protein n=6 Tax=Ceramiales TaxID=2802 RepID=A0A4D6WZB4_9FLOR)

HSP 1 Score: 286 bits (732), Expect = 5.230e-93
Identity = 139/154 (90.26%), Postives = 150/154 (97.40%), Query Frame = 0

Query:    1 MADILHRLDYIRRGHLLTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRVTNHVDFPDYTAEELLAIAKLMLEEQQYRFAPEADEVLLEYAGRRI 154
            MADIL++L YI++GHLLTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQRDDLVVIFAGYK++MDKFYESNPGLSSRVTNHVDFPDYTAEELL IAKLMLEEQQY+FA +AD+VLLEYA +R+
Sbjct:   87 MADILYKLGYIQKGHLLTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQRDDLVVIFAGYKEKMDKFYESNPGLSSRVTNHVDFPDYTAEELLEIAKLMLEEQQYKFASDADQVLLEYADKRM 240

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BLAST of Ggra420.t1 vs. uniprot
Match: A0A141SCW4 (Putative rubisco expression protein n=1 Tax=Sporolithon durum TaxID=48970 RepID=A0A141SCW4_9FLOR)

HSP 1 Score: 286 bits (731), Expect = 7.410e-93
Identity = 140/154 (90.91%), Postives = 148/154 (96.10%), Query Frame = 0

Query:    1 MADILHRLDYIRRGHLLTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRVTNHVDFPDYTAEELLAIAKLMLEEQQYRFAPEADEVLLEYAGRRI 154
            MADILHRLDYIR+GHL+TVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQR+DLVVIFAGYKDRM+KFY SNPGLSSRVTNHVDFPDYTA+ELL IAKLMLEEQQY+F  +AD VLLEYA RR+
Sbjct:   87 MADILHRLDYIRKGHLMTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQRNDLVVIFAGYKDRMNKFYASNPGLSSRVTNHVDFPDYTAQELLQIAKLMLEEQQYKFESKADTVLLEYAERRM 240

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BLAST of Ggra420.t1 vs. uniprot
Match: A0A4D6WYP8 (Rubisco expression protein n=1 Tax=Wrangelia sp. TaxID=2575620 RepID=A0A4D6WYP8_9FLOR)

HSP 1 Score: 286 bits (731), Expect = 7.660e-93
Identity = 139/154 (90.26%), Postives = 149/154 (96.75%), Query Frame = 0

Query:    1 MADILHRLDYIRRGHLLTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRVTNHVDFPDYTAEELLAIAKLMLEEQQYRFAPEADEVLLEYAGRRI 154
            M+DIL++L YIR+GHLLTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQRDDLVVIFAGYKD+MDKFYESNPGLSSRVTNHVDFPDYT +ELL IAKLMLEEQQYRFA +AD+VLL+YA RR+
Sbjct:   87 MSDILYKLGYIRKGHLLTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQRDDLVVIFAGYKDKMDKFYESNPGLSSRVTNHVDFPDYTGDELLQIAKLMLEEQQYRFADDADKVLLDYAERRM 240

The following BLAST results are available for this feature:

BLAST of Ggra420.t1 vs. uniprot

BLAST of Ggra420.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Q6B8N8	1.680e-96	94.81	CfxQ protein homolog n=75 Tax=Florideophyceae TaxI...	[more]
A0A1C9CAY5	8.720e-96	93.51	Putative rubisco expression protein n=5 Tax=Florid...	[more]
A0A1Z1MBX2	2.700e-95	92.21	Rubisco expression protein n=2 Tax=Rhodomelaceae T...	[more]
A0A1C8XSA0	5.610e-95	92.86	CfxQ-like protein n=27 Tax=Ceramiales TaxID=2802 R...	[more]
A0A0B5W5V0	2.190e-94	91.56	CfxQ-like protein n=23 Tax=Ceramiales TaxID=2802 R...	[more]
A0A1G4NTC7	3.540e-94	92.21	Rubisco expression protein n=15 Tax=Nemaliales Tax...	[more]
A0A4D6WUJ1	4.070e-93	90.26	Rubisco expression protein n=3 Tax=Ceramiales TaxI...	[more]
A0A4D6WZB4	5.230e-93	90.26	Rubisco expression protein n=6 Tax=Ceramiales TaxI...	[more]
A0A141SCW4	7.410e-93	90.91	Putative rubisco expression protein n=1 Tax=Sporol...	[more]
A0A4D6WYP8	7.660e-93	90.26	Rubisco expression protein n=1 Tax=Wrangelia sp. T...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000641	CbxX/CfxQ	PRINTS	PR00819	CBXCFQXSUPER	coord: 21..35 score: 82.92 coord: 87..104 score: 69.1 coord: 66..78 score: 76.44 coord: 104..123 score: 62.5 coord: 35..54 score: 77.5
IPR036788	Translation initiation factor 3 (IF-3), C-terminal domain superfamily	GENE3D	3.30.110.10		coord: 202..297 e-value: 7.5E-30 score: 104.9
IPR036788	Translation initiation factor 3 (IF-3), C-terminal domain superfamily	SUPERFAMILY	55200	Translation initiation factor IF3, C-terminal domain	coord: 210..295
IPR019815	Translation initiation factor 3, C-terminal	PFAM	PF00707	IF3_C	coord: 209..294 e-value: 1.5E-32 score: 111.4
IPR003959	ATPase, AAA-type, core	PFAM	PF00004	AAA	coord: 15..115 e-value: 4.3E-8 score: 33.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 1..116 e-value: 8.2E-33 score: 115.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 4..265
IPR036787	Translation initiation factor 3 (IF-3), N-terminal domain superfamily	GENE3D	3.10.20.80		coord: 132..201 e-value: 8.4E-20 score: 72.6
IPR019814	Translation initiation factor 3, N-terminal	PFAM	PF05198	IF3_N	coord: 154..202 e-value: 2.8E-18 score: 66.0
IPR001288	Translation initiation factor 3	TIGRFAM	TIGR00168	TIGR00168	coord: 152..295 e-value: 2.6E-58 score: 194.3
IPR001288	Translation initiation factor 3	HAMAP	MF_00080	IF_3	coord: 119..296 score: 24.27515
None	No IPR available	PANTHER	PTHR43392	AAA-TYPE ATPASE FAMILY PROTEIN / ANKYRIN REPEAT FAMILY PROTEIN	coord: 1..144
None	No IPR available	PANTHER	PTHR43392:SF2	AAA-TYPE ATPASE FAMILY PROTEIN / ANKYRIN REPEAT FAMILY PROTEIN	coord: 1..144
None	No IPR available	CDD	cd00009	AAA	coord: 20..116 e-value: 4.66347E-5 score: 40.9775
IPR019813	Translation initiation factor 3, conserved site	PROSITE	PS00938	IF3	coord: 184..197

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000928_pilon	contig	tig00000928_pilon:148974..151387 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra420.t1	Ggra420.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000928_pilon 148974..151387 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra420.t1 ID=Ggra420.t1|Name=Ggra420.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=298bp
MADILHRLDYIRRGHLLTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFI
DEAYYLYKPDNERDYGAEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYE
SNPGLSSRVTNHVDFPDYTAEELLAIAKLMLEEQQYRFAPEADEVLLEYA
GRRIYSSSEALNMAFNAGLDLVLISEKSNPPVCRIIDYGKYKFTQEKKAK
EAKKKQHNVTIKEVKMRYKIDVHDYNVRINQALRFLQAGDKVKANVIFRG
REIQHAKLAIELLDKMSKDLSDIAEVQQPPAKDGKNMIMILSPKKVQ*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000641	CbxX/CfxQ
IPR036788	T_IF-3_C_sf
IPR019815	Translation_initiation_fac_3_C
IPR003959	ATPase_AAA_core
IPR027417	P-loop_NTPase
IPR036787	T_IF-3_N_sf
IPR019814	Translation_initiation_fac_3_N
IPR001288	Translation_initiation_fac_3
IPR019813	Translation_initiation_fac3_CS