Ggra420.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra420.t1
Unique NameGgra420.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length298
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000928_piloncontigtig00000928_pilon:148974..151387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.AAC35641
Preferred namecfxQ
PFAMsAAA
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue8.66e-86
EggNOG OGsCOG0464@1|root,KOG0730@2759|Eukaryota
DescriptionATP binding
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra420Ggra420Gracilaria gracilis GNS1m malegenetig00000928_pilon 148974..151387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra420.t1Ggra420.t1Gracilaria gracilis GNS1m malepolypeptidetig00000928_pilon 148974..151387 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra420.t1.start1Ggra420.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000928_pilon 148974..148976 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra420.t1.CDS1Ggra420.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000928_pilon 148974..149430 +
Ggra420.t1.CDS2Ggra420.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000928_pilon 150951..151387 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra420.t1.exon1Ggra420.t1.exon1Gracilaria gracilis GNS1m maleexontig00000928_pilon 148974..149430 +
Ggra420.t1.exon2Ggra420.t1.exon2Gracilaria gracilis GNS1m maleexontig00000928_pilon 150951..151387 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra420.t1.intron1Ggra420.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000928_pilon 149431..150950 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra420.t1.stop1Ggra420.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000928_pilon 151385..151387 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra420.t1 ID=Ggra420.t1|Name=Ggra420.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=298bp
MADILHRLDYIRRGHLLTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFI
DEAYYLYKPDNERDYGAEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYE
SNPGLSSRVTNHVDFPDYTAEELLAIAKLMLEEQQYRFAPEADEVLLEYA
GRRIYSSSEALNMAFNAGLDLVLISEKSNPPVCRIIDYGKYKFTQEKKAK
EAKKKQHNVTIKEVKMRYKIDVHDYNVRINQALRFLQAGDKVKANVIFRG
REIQHAKLAIELLDKMSKDLSDIAEVQQPPAKDGKNMIMILSPKKVQ*
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spliced messenger RNA

>Ggra420.t1 ID=Ggra420.t1|Name=Ggra420.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00000928_pilon:148974..151387+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGATATTCTACATAGATTAGATTATATTCGTAGAGGCCATTTACT
GACCGTAACTAGAGATGATCTCGTAGGTCAATATATCGGGCATACAGCTC
CAAAAACTAAAGAAGTTCTTAAACAAGCTATGGGAGGTGTTCTATTTATT
GATGAAGCTTATTATCTTTATAAACCAGATAATGAAAGAGATTATGGAGC
AGAAGCTATAGAAATTTTACTACAGGTTATGGAAAATCAAAGAGATGATT
TAGTAGTGATTTTTGCTGGCTACAAAGATAGAATGGATAAGTTCTACGAA
TCCAATCCAGGTCTATCATCAAGAGTCACAAATCATGTAGATTTCCCAGA
TTATACAGCAGAAGAATTGCTGGCTATAGCTAAACTAATGCTAGAAGAGC
AACAGTATCGTTTTGCTCCGGAAGCAGATGAAGTTCTTTTAGAATATGCT
GGAAGACGTATATACTCATCAAGTGAAGCTTTAAATATGGCATTTAATGC
TGGTTTAGATTTAGTATTAATCAGCGAAAAATCTAATCCTCCTGTATGTC
GTATAATAGATTATGGAAAGTATAAGTTTACTCAAGAAAAGAAAGCTAAA
GAAGCGAAGAAAAAGCAGCATAATGTTACAATAAAAGAAGTGAAGATGAG
GTACAAGATAGATGTACACGATTATAATGTACGTATTAATCAAGCATTAC
GTTTTCTACAAGCTGGTGATAAAGTTAAAGCTAATGTAATATTCAGAGGT
AGAGAAATTCAACATGCTAAATTAGCTATTGAATTATTAGATAAAATGTC
AAAAGATTTAAGTGATATAGCAGAGGTTCAACAACCTCCTGCAAAAGATG
GTAAAAATATGATTATGATTTTATCACCTAAAAAAGTACAATAA
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protein sequence of Ggra420.t1

>Ggra420.t1 ID=Ggra420.t1|Name=Ggra420.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=298bp
MADILHRLDYIRRGHLLTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFI
DEAYYLYKPDNERDYGAEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYE
SNPGLSSRVTNHVDFPDYTAEELLAIAKLMLEEQQYRFAPEADEVLLEYA
GRRIYSSSEALNMAFNAGLDLVLISEKSNPPVCRIIDYGKYKFTQEKKAK
EAKKKQHNVTIKEVKMRYKIDVHDYNVRINQALRFLQAGDKVKANVIFRG
REIQHAKLAIELLDKMSKDLSDIAEVQQPPAKDGKNMIMILSPKKVQ*
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mRNA from alignment at tig00000928_pilon:148974..151387+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra420.t1 ID=Ggra420.t1|Name=Ggra420.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2414bp|location=Sequence derived from alignment at tig00000928_pilon:148974..151387+ (Gracilaria gracilis GNS1m male)
ATGGCTGATATTCTACATAGATTAGATTATATTCGTAGAGGCCATTTACT
GACCGTAACTAGAGATGATCTCGTAGGTCAATATATCGGGCATACAGCTC
CAAAAACTAAAGAAGTTCTTAAACAAGCTATGGGAGGTGTTCTATTTATT
GATGAAGCTTATTATCTTTATAAACCAGATAATGAAAGAGATTATGGAGC
AGAAGCTATAGAAATTTTACTACAGGTTATGGAAAATCAAAGAGATGATT
TAGTAGTGATTTTTGCTGGCTACAAAGATAGAATGGATAAGTTCTACGAA
TCCAATCCAGGTCTATCATCAAGAGTCACAAATCATGTAGATTTCCCAGA
TTATACAGCAGAAGAATTGCTGGCTATAGCTAAACTAATGCTAGAAGAGC
AACAGTATCGTTTTGCTCCGGAAGCAGATGAAGTTCTTTTAGAATATGCT
GGAAGACGTATGAAACAACCCCACTTTGCTAATGCCCGTAGTATACGTAA
TGCAATTGATAGAGCTAGAATGAGACAAGCAAATAGAATTTTTATTAGTG
GGGATAAAATTTTAACTAAAAATGATTTAGTAACAATTAAAGCAGAAGAT
ATACTAAAAAGCCGCTTATTTACTCAGTAAATAATATATATTGATAATTT
ATTCAATTGACAAAGTATAACTTTTCATATACCATTAAACTTAATAGAGA
CTACGGCGATATAGCCAAGTGGTAAGGCAGGGGATTGCAAATCCTTTATC
CCCAGTTCAAATCTGGGTATCGCCTACTCAATTAAAGATACAATATAATC
GGGGATGTGGTGGAATGGTAGACACAACAGACTTAAAATCTGTTGATTTT
TAATAATCGTGAGGGTTCAAGTCCCTCCATCCCCAATAGTATTAACATGA
TATTAATTATAAATAAATTTACAATATTTCTTATGTGTATATGTGTGAAC
TGTAGGCATGTTCATAACTGTTTTACTTATCGTCTAATTCAAAAACAACA
TAATTGCAGATATAATAAGAACATCATTACTACTTATTTTATACCGAAAG
AAACCTTAattaatattaatattaattatattaataAAAGTGTGTGTTTT
GACTGGGATTTAACGGAATGTTTATCATTTGTTGAAATTCCTGGTTATTG
GATAAACTAAAAACATAGTTTATATTTCTTATGTGTTTTATTTATAGACT
TATGATAAAGAATAATTCTTTAACCTTGTTTTTAATACTTCTGTATTTAC
ATTTGATGTTCTAATCAATGCAATTCTACCTGTACGAGCAATTTCAATAA
TACCATATTGTTTCAATAAATTTTCAATAGCAACCATTTTCCCTGGATCA
CCTGTAACTTCTAAAATCAAATATTCATGAGCCATGTCGACAACTTTGGC
TCTAAATATACGTGCAATTTCCAATATATAAGACCTATTTTCTAATAGAG
CATGAATTTTTATCAAAACTAATTCTCTCTCTACAGAAGGTATATCTGTA
ATATTTTGAACTTTTAATATATTCACTAATTTATATAATTGTTTAGTTAA
TTGTTCTATTGTTCTATTATCACCATTTACTATCATAGTAATTCTGGAAA
TACCTGCCTTCTCTGCCGGGCCAACAGCAAGGCTCTCGATATTAAAGCCC
CGTCTAGCAAATAACCCAGCAATTCTAGATAAAACTCCTGCTTCGTCTTC
TACAAGAACAGACAAAGTATGTTTCATAAATCATCTCCTAATTTTTAATA
AGTGTTTATTACACTCAAATACATTGTTATTTCTAATTATCTATGTAATG
TTATAATAATTTGCATATATTTCACAACATTATTTATAAACTTACAAACA
GGCAACTGACTATCTGTGTTAGATAAATCAAAAAAAGAAAGAAAAAGAAA
TGATATAGAACCATTAATAAATGCACAAATTAAGTATAGTCAAGTACGTT
TAATTGATGTTTCTGGATCTCAATTAGGTATATACTCATCAAGTGAAGCT
TTAAATATGGCATTTAATGCTGGTTTAGATTTAGTATTAATCAGCGAAAA
ATCTAATCCTCCTGTATGTCGTATAATAGATTATGGAAAGTATAAGTTTA
CTCAAGAAAAGAAAGCTAAAGAAGCGAAGAAAAAGCAGCATAATGTTACA
ATAAAAGAAGTGAAGATGAGGTACAAGATAGATGTACACGATTATAATGT
ACGTATTAATCAAGCATTACGTTTTCTACAAGCTGGTGATAAAGTTAAAG
CTAATGTAATATTCAGAGGTAGAGAAATTCAACATGCTAAATTAGCTATT
GAATTATTAGATAAAATGTCAAAAGATTTAAGTGATATAGCAGAGGTTCA
ACAACCTCCTGCAAAAGATGGTAAAAATATGATTATGATTTTATCACCTA
AAAAAGTACAATAA
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Coding sequence (CDS) from alignment at tig00000928_pilon:148974..151387+

>Ggra420.t1 ID=Ggra420.t1|Name=Ggra420.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=894bp|location=Sequence derived from alignment at tig00000928_pilon:148974..151387+ (Gracilaria gracilis GNS1m male)
ATGGCTGATATTCTACATAGATTAGATTATATTCGTAGAGGCCATTTACT
GACCGTAACTAGAGATGATCTCGTAGGTCAATATATCGGGCATACAGCTC
CAAAAACTAAAGAAGTTCTTAAACAAGCTATGGGAGGTGTTCTATTTATT
GATGAAGCTTATTATCTTTATAAACCAGATAATGAAAGAGATTATGGAGC
AGAAGCTATAGAAATTTTACTACAGGTTATGGAAAATCAAAGAGATGATT
TAGTAGTGATTTTTGCTGGCTACAAAGATAGAATGGATAAGTTCTACGAA
TCCAATCCAGGTCTATCATCAAGAGTCACAAATCATGTAGATTTCCCAGA
TTATACAGCAGAAGAATTGCTGGCTATAGCTAAACTAATGCTAGAAGAGC
AACAGTATCGTTTTGCTCCGGAAGCAGATGAAGTTCTTTTAGAATATGCT
GGAAGACGTATATACTCATCAAGTGAAGCTTTAAATATGGCATTTAATGC
TGGTTTAGATTTAGTATTAATCAGCGAAAAATCTAATCCTCCTGTATGTC
GTATAATAGATTATGGAAAGTATAAGTTTACTCAAGAAAAGAAAGCTAAA
GAAGCGAAGAAAAAGCAGCATAATGTTACAATAAAAGAAGTGAAGATGAG
GTACAAGATAGATGTACACGATTATAATGTACGTATTAATCAAGCATTAC
GTTTTCTACAAGCTGGTGATAAAGTTAAAGCTAATGTAATATTCAGAGGT
AGAGAAATTCAACATGCTAAATTAGCTATTGAATTATTAGATAAAATGTC
AAAAGATTTAAGTGATATAGCAGAGGTTCAACAACCTCCTGCAAAAGATG
GTAAAAATATGATTATGATTTTATCACCTAAAAAAGTACAATAA
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