Ggra4121.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4121.t1
Unique NameGgra4121.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length129
Homology
BLAST of Ggra4121.t1 vs. uniprot
Match: A0A2V3IZH9 (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZH9_9FLOR)

HSP 1 Score: 172 bits (435), Expect = 6.520e-53
Identity = 82/105 (78.10%), Postives = 93/105 (88.57%), Query Frame = 0
Query:   18 STQATRVSDEEKQRFEVELEFVQCLANPAYLNFLAQNEYLDSDDFVAYLKYLEYWRKPEYAKFIVFPSALYFLRLLQQPPFREALKRPDYSLMLHQQQGYHWQFE 122
            ST+  R  D ++QRFEVELEFVQCLAN AYLNFLAQNEYLDS DF+AYLKYL+YWR+PEYAKFIVFP AL+FL LLQ+P FREALKR DYS++LHQQQGY WQF+
Sbjct:   28 STEGERSPDADRQRFEVELEFVQCLANSAYLNFLAQNEYLDSPDFIAYLKYLQYWRRPEYAKFIVFPHALHFLYLLQEPDFREALKRNDYSMILHQQQGYQWQFD 132          
BLAST of Ggra4121.t1 vs. uniprot
Match: A0A7S0G218 (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G218_9RHOD)

HSP 1 Score: 142 bits (359), Expect = 1.800e-41
Identity = 67/101 (66.34%), Postives = 80/101 (79.21%), Query Frame = 0
Query:   26 DEEKQRFEVELEFVQCLANPAYLNFLAQNEYLDSDDFVAYLKYLEYWRKPEYAKFIVFPSALYFLRLLQQPPFREALKRPDYSLMLHQQQGYHWQFESRWK 126
            D+++ RFE ELEFVQCLA+P YL++LAQN + +  DF+ YLKYL+YWR P YAKFIVFP  LYFLRLLQ+  FREALKR DY   +HQQQGY+WQF  R K
Sbjct:    7 DKDQVRFETELEFVQCLASPGYLHYLAQNRFFEDKDFLDYLKYLQYWRLPSYAKFIVFPHCLYFLRLLQEEEFREALKRQDYYTFVHQQQGYYWQFGRRLK 107          
BLAST of Ggra4121.t1 vs. uniprot
Match: A0A7S1TBG4 (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TBG4_9RHOD)

HSP 1 Score: 140 bits (354), Expect = 8.630e-41
Identity = 66/96 (68.75%), Postives = 78/96 (81.25%), Query Frame = 0
Query:   26 DEEKQRFEVELEFVQCLANPAYLNFLAQNEYLDSDDFVAYLKYLEYWRKPEYAKFIVFPSALYFLRLLQQPPFREALKRPDYSLMLHQQQGYHWQF 121
            ++E +RFE ELEFVQCLA+PAY+++LAQN Y D D F+AYL YL+YWR  EYAKFIVFP  LYFLRLLQQ  FREA+KR DY L +HQQQG +W F
Sbjct:    7 EKEIERFETELEFVQCLASPAYIHWLAQNRYFDDDSFLAYLNYLQYWRTQEYAKFIVFPHCLYFLRLLQQESFREAMKRNDYMLFVHQQQGNYWMF 102          
BLAST of Ggra4121.t1 vs. uniprot
Match: A0A7S3EJP8 (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EJP8_9RHOD)

HSP 1 Score: 140 bits (354), Expect = 9.060e-40
Identity = 65/96 (67.71%), Postives = 78/96 (81.25%), Query Frame = 0
Query:   26 DEEKQRFEVELEFVQCLANPAYLNFLAQNEYLDSDDFVAYLKYLEYWRKPEYAKFIVFPSALYFLRLLQQPPFREALKRPDYSLMLHQQQGYHWQF 121
            D+++ RFE ELEFVQCLA+P YL++LAQN + +  DF+ YLKYL+YWR P YAKFIVFP  LYFLRLLQ+  FREALKR DY   +HQQQGY+WQF
Sbjct:   80 DKDQIRFETELEFVQCLASPGYLHYLAQNRFFEDKDFLDYLKYLQYWRLPSYAKFIVFPHCLYFLRLLQEEEFREALKRQDYYTFVHQQQGYYWQF 175          
BLAST of Ggra4121.t1 vs. uniprot
Match: A0A7S1XCN2 (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XCN2_9RHOD)

HSP 1 Score: 133 bits (334), Expect = 1.170e-37
Identity = 63/90 (70.00%), Postives = 74/90 (82.22%), Query Frame = 0
Query:   26 DEEKQRFEVELEFVQCLANPAYLNFLAQNEYLDSDDFVAYLKYLEYWRKPEYAKFIVFPSALYFLRLLQQPPFREALKRPDYSLMLHQQQ 115
            ++E +RFE ELEFVQCLA+PAY+++LAQN Y D D F+AYL YL+YWR  EYAKFIVFP  LYFLRLLQQ  FREA+KR DY L +HQQQ
Sbjct:    7 EKEIERFETELEFVQCLASPAYIHWLAQNRYFDDDSFLAYLNYLQYWRTQEYAKFIVFPHCLYFLRLLQQESFREAMKRNDYMLFVHQQQ 96          
BLAST of Ggra4121.t1 vs. uniprot
Match: A0A7S3A3F0 (Mediator of RNA polymerase II transcription subunit 31 n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A3F0_9RHOD)

HSP 1 Score: 130 bits (326), Expect = 8.070e-35
Identity = 61/93 (65.59%), Postives = 74/93 (79.57%), Query Frame = 0
Query:   26 DEEKQRFEVELEFVQCLANPAYLNFLAQNEYLDSDDFVAYLKYLEYWRKPEYAKFIVFPSALYFLRLLQQPPFREALKRPDYSLMLHQQQGYH 118
            D+++ RFE ELEFVQCLA+P YL++LAQN + +  DF+ YLKYL+YWR P YAKFIVFP  LYFLRLLQ+  FREALKR DY   +HQQQ +H
Sbjct:   80 DKDQIRFETELEFVQCLASPGYLHYLAQNRFFEDKDFLDYLKYLQYWRLPSYAKFIVFPHCLYFLRLLQEEEFREALKRQDYYTFVHQQQVWH 172          
BLAST of Ggra4121.t1 vs. uniprot
Match: A0A068RZM8 (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Lichtheimia corymbifera JMRC:FSU:9682 TaxID=1263082 RepID=A0A068RZM8_9FUNG)

HSP 1 Score: 123 bits (309), Expect = 3.560e-33
Identity = 54/95 (56.84%), Postives = 73/95 (76.84%), Query Frame = 0
Query:   27 EEKQRFEVELEFVQCLANPAYLNFLAQNEYLDSDDFVAYLKYLEYWRKPEYAKFIVFPSALYFLRLLQQPPFREALKRPDYSLMLHQQQGYHWQF 121
            +++QRF++ELEFVQCLANP YLN LAQ +Y   D F+ YL+YL+YW+KPEYA+F+V+P ALYFL LLQ P FRE +   + +  +H+ Q YHW +
Sbjct:   38 DDEQRFQIELEFVQCLANPWYLNHLAQQQYFKDDAFIRYLEYLQYWKKPEYARFVVYPHALYFLDLLQHPKFREHISTSENTQEIHRMQYYHWMY 132          
BLAST of Ggra4121.t1 vs. uniprot
Match: A0A2P6TGR1 (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TGR1_CHLSO)

HSP 1 Score: 121 bits (304), Expect = 7.540e-33
Identity = 59/105 (56.19%), Postives = 76/105 (72.38%), Query Frame = 0
Query:   23 RVSDEEK------QRFEVELEFVQCLANPAYLNFLAQNEYLDSDDFVAYLKYLEYWRKPEYAKFIVFPSALYFLRLLQQPPFREALKRPDYSLMLHQQQGYHWQF 121
            R +DEE+      +RFE+ELEF+ CLANP YLN+LAQN Y + + F+ YLKYL YWR+P+YA+FIV+P ALYFL LLQ P FR  +  P Y  M+H QQ + WQ+
Sbjct:    8 RRADEEEVGCSGMRRFELELEFLHCLANPGYLNWLAQNRYFEDEAFLEYLKYLLYWRQPQYARFIVYPHALYFLDLLQTPEFRAKIANPAYKEMVHTQQFFFWQY 112          
BLAST of Ggra4121.t1 vs. uniprot
Match: A0A397S598 (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397S598_9GLOM)

HSP 1 Score: 121 bits (303), Expect = 8.980e-33
Identity = 54/101 (53.47%), Postives = 76/101 (75.25%), Query Frame = 0
Query:   19 TQATRVSDEEKQRFEVELEFVQCLANPAYLNFLAQNEYLDSDDFVAYLKYLEYWRKPEYAKFIVFPSALYFLRLLQQPPFREALKRPDYSLMLHQQQGYHW 119
            ++A+    + ++RF++ELEF+QCLANP YLN LAQ EY +   F+ YL+YL+YW++PEYAKFI++P +LYFL LLQ P FRE LK  + +  +H +Q YHW
Sbjct:   14 SKASESEKKNRRRFQIELEFIQCLANPWYLNNLAQKEYFEDPAFINYLEYLKYWKRPEYAKFIIYPHSLYFLDLLQNPQFREHLKNYEVATEIHSKQYYHW 114          
BLAST of Ggra4121.t1 vs. uniprot
Match: S2JPN7 (Mediator of RNA polymerase II transcription subunit 31 n=5 Tax=Mucoraceae TaxID=34489 RepID=S2JPN7_MUCC1)

HSP 1 Score: 120 bits (301), Expect = 1.070e-32
Identity = 53/97 (54.64%), Postives = 75/97 (77.32%), Query Frame = 0
Query:   25 SDEEKQRFEVELEFVQCLANPAYLNFLAQNEYLDSDDFVAYLKYLEYWRKPEYAKFIVFPSALYFLRLLQQPPFREALKRPDYSLMLHQQQGYHWQF 121
            ++EEK+RF++ELEF+QCL+NP YLN LAQ +Y   + F+ YL+YL+YW++PEYAKF+V+P ALYFL LLQ   FR+ +   + +  LH+ Q YHWQ+
Sbjct:    4 AEEEKRRFQIELEFIQCLSNPWYLNNLAQQQYFKDEAFINYLEYLQYWKQPEYAKFVVYPHALYFLDLLQHAQFRDYVSTSENTQELHRMQYYHWQY 100          
The following BLAST results are available for this feature:
BLAST of Ggra4121.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IZH96.520e-5378.10Mediator of RNA polymerase II transcription subuni... [more]
A0A7S0G2181.800e-4166.34Mediator of RNA polymerase II transcription subuni... [more]
A0A7S1TBG48.630e-4168.75Mediator of RNA polymerase II transcription subuni... [more]
A0A7S3EJP89.060e-4067.71Mediator of RNA polymerase II transcription subuni... [more]
A0A7S1XCN21.170e-3770.00Mediator of RNA polymerase II transcription subuni... [more]
A0A7S3A3F08.070e-3565.59Mediator of RNA polymerase II transcription subuni... [more]
A0A068RZM83.560e-3356.84Mediator of RNA polymerase II transcription subuni... [more]
A0A2P6TGR17.540e-3356.19Mediator of RNA polymerase II transcription subuni... [more]
A0A397S5988.980e-3353.47Mediator of RNA polymerase II transcription subuni... [more]
S2JPN71.070e-3254.64Mediator of RNA polymerase II transcription subuni... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038089Mediator of RNA polymerase II, subunit Med31 superfamilyGENE3D1.10.10.1340Mediator of RNA polymerase II, submodule Med31 (Soh1)coord: 17..119
e-value: 2.9E-40
score: 138.2
IPR008831Mediator complex, subunit Med31PFAMPF05669Med31coord: 29..121
e-value: 1.1E-36
score: 124.7
IPR008831Mediator complex, subunit Med31PANTHERPTHR13186MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31coord: 16..124
NoneNo IPR availablePANTHERPTHR13186:SF0MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31coord: 16..124

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:177616..178208 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4121.t1Ggra4121.t1Gracilaria gracilis GNS1m malemRNAtig00000853_pilon 177616..178208 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4121.t1 ID=Ggra4121.t1|Name=Ggra4121.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=129bp
MTDGAQQANTSAVAEIGSTQATRVSDEEKQRFEVELEFVQCLANPAYLNF
LAQNEYLDSDDFVAYLKYLEYWRKPEYAKFIVFPSALYFLRLLQQPPFRE
ALKRPDYSLMLHQQQGYHWQFESRWKKS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038089Med31_sf
IPR008831Mediator_Med31