Ggra4121.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4121.t1
Unique NameGgra4121.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length129
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:177616..178208 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28532.XP_010520601.1
PFAMsMed31
Max annot lvl35493|Streptophyta
KEGG koko:K15153
GOsGO:0000428,GO:0003674,GO:0003712,GO:0003713,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0006355,GO:0006357,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0016591,GO:0016592,GO:0019219,GO:0019222,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070847,GO:0080090,GO:0090575,GO:0140110,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1990234,GO:2000112,GO:2001141
Evalue4.01e-32
EggNOG OGsCOG5088@1|root,KOG4086@2759|Eukaryota,37NMH@33090|Viridiplantae,3G8HJ@35493|Streptophyta,3HQ1Y@3699|Brassicales
DescriptionComponent of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors
COG categoryK
BRITEko00000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4121Ggra4121Gracilaria gracilis GNS1m malegenetig00000853_pilon 177616..178208 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4121.t1Ggra4121.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 177616..178208 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4121.t1.start1Ggra4121.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 177616..177618 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4121.t1.CDS1Ggra4121.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 177616..177763 +
Ggra4121.t1.CDS2Ggra4121.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000853_pilon 177867..178031 +
Ggra4121.t1.CDS3Ggra4121.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000853_pilon 178135..178208 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4121.t1.exon1Ggra4121.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 177616..177763 +
Ggra4121.t1.exon2Ggra4121.t1.exon2Gracilaria gracilis GNS1m maleexontig00000853_pilon 177867..178031 +
Ggra4121.t1.exon3Ggra4121.t1.exon3Gracilaria gracilis GNS1m maleexontig00000853_pilon 178135..178208 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4121.t1.intron1Ggra4121.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000853_pilon 177764..177866 +
Ggra4121.t1.intron2Ggra4121.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000853_pilon 178032..178134 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4121.t1.stop1Ggra4121.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 178206..178208 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4121.t1 ID=Ggra4121.t1|Name=Ggra4121.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=129bp
MTDGAQQANTSAVAEIGSTQATRVSDEEKQRFEVELEFVQCLANPAYLNF
LAQNEYLDSDDFVAYLKYLEYWRKPEYAKFIVFPSALYFLRLLQQPPFRE
ALKRPDYSLMLHQQQGYHWQFESRWKKS*
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spliced messenger RNA

>Ggra4121.t1 ID=Ggra4121.t1|Name=Ggra4121.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=387bp|location=Sequence derived from alignment at tig00000853_pilon:177616..178208+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGACGGTGCGCAACAGGCGAACACATCTGCCGTCGCCGAGATTGG
CTCTACACAAGCGACGCGCGTATCAGACGAGGAGAAACAGCGTTTTGAAG
TTGAGCTTGAATTCGTACAATGTTTGGCTAATCCTGCGTATCTCAATTTT
CTTGCGCAGAATGAATATCTTGATTCCGACGACTTCGTTGCTTACCTCAA
GTACCTCGAGTACTGGCGAAAGCCCGAGTATGCCAAGTTCATCGTGTTTC
CAAGTGCACTTTACTTCTTGCGATTGTTACAACAGCCACCTTTTCGAGAA
GCTTTGAAGCGACCTGATTACTCGTTGATGCTTCATCAACAACAAGGATA
TCACTGGCAGTTTGAAAGTCGTTGGAAGAAGTCCTAG
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protein sequence of Ggra4121.t1

>Ggra4121.t1 ID=Ggra4121.t1|Name=Ggra4121.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=129bp
MTDGAQQANTSAVAEIGSTQATRVSDEEKQRFEVELEFVQCLANPAYLNF
LAQNEYLDSDDFVAYLKYLEYWRKPEYAKFIVFPSALYFLRLLQQPPFRE
ALKRPDYSLMLHQQQGYHWQFESRWKKS*
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mRNA from alignment at tig00000853_pilon:177616..178208+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4121.t1 ID=Ggra4121.t1|Name=Ggra4121.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=593bp|location=Sequence derived from alignment at tig00000853_pilon:177616..178208+ (Gracilaria gracilis GNS1m male)
ATGACTGACGGTGCGCAACAGGCGAACACATCTGCCGTCGCCGAGATTGG
CTCTACACAAGCGACGCGCGTATCAGACGAGGAGAAACAGCGTTTTGAAG
TTGAGCTTGAATTCGTACAATGTTTGGCTAATCCTGCGTATCTCAATTGT
ACGTCATGTTTTCCGTGCCTCTCATGGGTTTGCGATGCGCGTTTGTATTT
TTGCCCACTGACATTGCGTCCTTTTTGTTGCTCCCACGATGCGTTTTGCA
GTTCTTGCGCAGAATGAATATCTTGATTCCGACGACTTCGTTGCTTACCT
CAAGTACCTCGAGTACTGGCGAAAGCCCGAGTATGCCAAGTTCATCGTGT
TTCCAAGTGCACTTTACTTCTTGCGATTGTTACAACAGCCACCTTTTCGA
GAAGCTTTGAAGCGACGTACGTTGTGCCACTTCCTTCCTTCTCCGCTGCA
ATTATTATTGTGTGTTCTTTTATCTGACTCGCCGCGACGTATCATTTCCT
TCTGTGTGACTCTGAACAGCTGATTACTCGTTGATGCTTCATCAACAACA
AGGATATCACTGGCAGTTTGAAAGTCGTTGGAAGAAGTCCTAG
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Coding sequence (CDS) from alignment at tig00000853_pilon:177616..178208+

>Ggra4121.t1 ID=Ggra4121.t1|Name=Ggra4121.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=387bp|location=Sequence derived from alignment at tig00000853_pilon:177616..178208+ (Gracilaria gracilis GNS1m male)
ATGACTGACGGTGCGCAACAGGCGAACACATCTGCCGTCGCCGAGATTGG
CTCTACACAAGCGACGCGCGTATCAGACGAGGAGAAACAGCGTTTTGAAG
TTGAGCTTGAATTCGTACAATGTTTGGCTAATCCTGCGTATCTCAATTTT
CTTGCGCAGAATGAATATCTTGATTCCGACGACTTCGTTGCTTACCTCAA
GTACCTCGAGTACTGGCGAAAGCCCGAGTATGCCAAGTTCATCGTGTTTC
CAAGTGCACTTTACTTCTTGCGATTGTTACAACAGCCACCTTTTCGAGAA
GCTTTGAAGCGACCTGATTACTCGTTGATGCTTCATCAACAACAAGGATA
TCACTGGCAGTTTGAAAGTCGTTGGAAGAAGTCCTAG
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