Ggra4008.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4008.t1
Unique NameGgra4008.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length243
Homology
BLAST of Ggra4008.t1 vs. uniprot
Match: A0A2V3IQL5 (Thylakoid lumenal 15 kDa protein 1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQL5_9FLOR)

HSP 1 Score: 171 bits (432), Expect = 5.330e-50
Identity = 141/185 (76.22%), Postives = 156/185 (84.32%), Query Frame = 0
Query:   58 LTTAAAVALISTTAAHCLAADTDVRPQLKVPGGSASTSGGVAGSRSVIKTVTRGVNLEGADFSNQDFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQXXXXXXXXSGAYISSTTKFEGAILDDTDWTETLLRKDIQAYLCEKAKGTNPQTGVDTQESLFCPLD 242
            LTT  A+A+++TT  + LA DTDVRP LKVPGGSASTS G++G R+V+KTVTRGVNLEGADFS+QDFE           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXSGAYISSTT F+G ILDDTDWT+TLLRKD Q +LC  AKGTNP TGVDT+ESL CP+D
Sbjct:    2 LTTVTAIAIVATTTTNSLALDTDVRPLLKVPGGSASTSAGISGQRTVVKTVTRGVNLEGADFSDQDFEGISFQQSILRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGAYISSTTTFDGVILDDTDWTDTLLRKDTQKFLCRTAKGTNPVTGVDTRESLLCPID 186          
BLAST of Ggra4008.t1 vs. uniprot
Match: A0A830H9Y4 (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830H9Y4_9CHLO)

HSP 1 Score: 74.3 bits (181), Expect = 5.070e-13
Identity = 31/46 (67.39%), Postives = 39/46 (84.78%), Query Frame = 0
Query:  194 KFEGAILDDTDWTETLLRKDIQAYLCEKAKGTNPQTGVDTQESLFC 239
            +FE AI+D+TDWT+ ++RKDI   LCE AKG NP+TGVDT+ESLFC
Sbjct:  109 RFENAIIDNTDWTDVIIRKDINNQLCEIAKGVNPKTGVDTRESLFC 154          
BLAST of Ggra4008.t1 vs. uniprot
Match: A0A8J5XHJ7 (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XHJ7_DIALT)

HSP 1 Score: 74.3 bits (181), Expect = 2.040e-12
Identity = 75/155 (48.39%), Postives = 94/155 (60.65%), Query Frame = 0
Query:   89 GGSASTSGGVAGSRSVIKTVTRGVNLEGADFSNQDFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQXXXXXXXXSGAYISSTTKFEG-AILDDTDWTETLLRKDIQAYLC--EKAKGTNPQTGVDTQESLFCP 240
            GG++S+S G   S    K +TRGVNL+ +DF+ ++ +                   XXXXXXXXXXXXXXXXXXXXXXXXX      +           Y+   T FEG A ++D+DWT+T LRKD + YLC  E AKGTNP+TGVDT+ESL CP
Sbjct:   75 GGASSSSEGF--SSGAYKVITRGVNLDRSDFAGKNLKGVAFQQSIVRDAKFMGANLXXXXXXXXXXXXXXXXXXXXXXXXXELAQLNRAILKGTILREVYVVGNTLFEGVATIEDSDWTDTELRKDQRLYLCGLESAKGTNPKTGVDTRESLMCP 227          
BLAST of Ggra4008.t1 vs. uniprot
Match: A0A1X6NJA0 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NJA0_PORUM)

HSP 1 Score: 69.7 bits (169), Expect = 3.090e-12
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 0
Query:  187 AYISSTTKFEGAILDDTDWTETLLRKDIQAYLCEKAKGTNPQTGVDTQESLFCP 240
            +YISSTTK +G  +   D+T+ LLRKD Q YLC  A GTN  TGVDT ESL CP
Sbjct:   14 SYISSTTKLDGVSIVGADFTDVLLRKDQQRYLCSIASGTNEVTGVDTAESLMCP 67          
BLAST of Ggra4008.t1 vs. uniprot
Match: A0A5B8MQB6 (Uncharacterized protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MQB6_9CHLO)

HSP 1 Score: 73.6 bits (179), Expect = 3.310e-12
Identity = 30/42 (71.43%), Postives = 37/42 (88.10%), Query Frame = 0
Query:  198 AILDDTDWTETLLRKDIQAYLCEKAKGTNPQTGVDTQESLFC 239
            AILDDTDWT+ +LRKD+  +LC+KAKGTNP+TG DT+ESL C
Sbjct:  175 AILDDTDWTDVVLRKDVNQFLCKKAKGTNPKTGADTRESLMC 216          
BLAST of Ggra4008.t1 vs. uniprot
Match: D7G7U8 (Thylakoid lumenal 15 kDa protein, chloroplast (P15) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7U8_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 7.030e-12
Identity = 80/157 (50.96%), Postives = 96/157 (61.15%), Query Frame = 0
Query:   86 KVPGGSASTSGGVAGSRSVIKTVTRGVNLEGADFSNQDFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQXXXXXXXXSGAYISSTTKFEGAILDDTDWTETLLRKDIQAYLC--EKAKGTNPQTGVDTQESLFCP 240
            K+  G+AST     G +   KTVTRGVN+E AD+ ++D                             XXXXXXXXXXXXXXXXXXXXXXX XXXXXX  + AY+S  TK E AI++  D+T+T LRKD   YLC  E AKGTNP +GVDT++SL CP
Sbjct:   94 KLSVGAAST-----GDKGARKTVTRGVNIENADYHDKDLSSVSFQQSLVRGTNFKNAKLVAAGFFDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTEAYVSGATKMEPAIIEGADFTDTFLRKDQVRYLCGLETAKGTNPVSGVDTRDSLGCP 245          
BLAST of Ggra4008.t1 vs. uniprot
Match: A0A7J7IN34 (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IN34_9RHOD)

HSP 1 Score: 73.2 bits (178), Expect = 7.530e-12
Identity = 87/154 (56.49%), Postives = 100/154 (64.94%), Query Frame = 0
Query:   86 KVPGGSASTSGGVAGSRSVIKTVTRGVNLEGADFSNQDFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQXXXXXXXXSGAYISSTTKFEGAILDDTDWTETLLRKDIQAYLCEKAKGTNPQTGVDTQESLFC 239
            KV GG AST   +A   S  K VTRGVNLEGA+F+NQD                        XXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXX  AY+   TK EG +++ +DWT+ LLR D + YLC+ A G N QTGV T++SL C
Sbjct:  100 KVRGGGAST---LASGTS--KIVTRGVNLEGANFANQDLHGVSFQQSIVRGCDFSGSNLQDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMNAYVVGQTKVEGVLIEGSDWTDVLLRPDQRRYLCKTAAGVNSQTGVATRDSLGC 248          
BLAST of Ggra4008.t1 vs. uniprot
Match: L1JM94 (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JM94_GUITC)

HSP 1 Score: 72.8 bits (177), Expect = 9.560e-12
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 0
Query:  187 AYISSTTKFEGAILDDTDWTETLLRKDIQAYLCEKAKGTNPQTGVDTQESLFCPL 241
            AYI STTK +G  ++  D+T+T LRKD Q YLC++A GTNP+TGVDT++SL C +
Sbjct:  188 AYIQSTTKLDGINIEGADFTDTELRKDQQRYLCKRASGTNPKTGVDTKDSLRCSM 242          
BLAST of Ggra4008.t1 vs. uniprot
Match: R7Q2X5 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q2X5_CHOCR)

HSP 1 Score: 72.0 bits (175), Expect = 1.650e-11
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 0
Query:   72 AHCLAAD-TDVRPQLKVPGGSASTSGGVAGSRSVIKTVTRGVNLEGADFSNQDFE 125
            A  LAAD  D+RPQLKV GGSASTSGG + +R+VIKTVTRGVNLEGADFSNQ F+
Sbjct:  139 APALAADEVDLRPQLKVSGGSASTSGG-SSTRTVIKTVTRGVNLEGADFSNQAFD 192          
BLAST of Ggra4008.t1 vs. uniprot
Match: A0A7S0TH33 (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TH33_HEMAN)

HSP 1 Score: 71.2 bits (173), Expect = 3.740e-11
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 0
Query:  187 AYISSTTKFEGAILDDTDWTETLLRKDIQAYLCEKAKGTNPQTGVDTQESLFC 239
            AYI +TTK +G  ++  D+T+T LRKD Q YLC +A GTNP+TGVDT +SL C
Sbjct:  185 AYILATTKLDGINIEGADFTDTFLRKDQQRYLCSRASGTNPKTGVDTYDSLLC 237          
The following BLAST results are available for this feature:
BLAST of Ggra4008.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IQL55.330e-5076.22Thylakoid lumenal 15 kDa protein 1, chloroplastic ... [more]
A0A830H9Y45.070e-1367.39Uncharacterized protein n=1 Tax=Pycnococcus provas... [more]
A0A8J5XHJ72.040e-1248.39Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A1X6NJA03.090e-1261.11Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A5B8MQB63.310e-1271.43Uncharacterized protein n=1 Tax=Chloropicon primus... [more]
D7G7U87.030e-1250.96Thylakoid lumenal 15 kDa protein, chloroplast (P15... [more]
A0A7J7IN347.530e-1256.49Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
L1JM949.560e-1258.18Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
R7Q2X51.650e-1176.36Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S0TH333.740e-1158.49Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001646Pentapeptide repeatPFAMPF13599Pentapeptide_4coord: 111..178
e-value: 7.0E-12
score: 45.4
NoneNo IPR availableGENE3D2.160.20.80coord: 99..241
e-value: 1.8E-42
score: 145.9
NoneNo IPR availableSUPERFAMILY141571Pentapeptide repeat-likecoord: 110..210
IPR044213Thylakoid lumenal 15kDa protein 1-likePANTHERPTHR47200THYLAKOID LUMENAL 15 KDA PROTEIN 1, CHLOROPLASTICcoord: 54..239

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:330285..331107 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4008.t1Ggra4008.t1Gracilaria gracilis GNS1m malemRNAtig00000908_pilon 330285..331107 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4008.t1 ID=Ggra4008.t1|Name=Ggra4008.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=243bp
MEHGAQTPLPQAHAPPITTAFVPFHPFVRTSTQCHSPPVPRNVTTCSTTQ
PPRWRQALTTAAAVALISTTAAHCLAADTDVRPQLKVPGGSASTSGGVAG
SRSVIKTVTRGVNLEGADFSNQDFEGVSFQQSILRQANFSNCNLRNASFF
DADVSGANFSNADLRGVNFELASLRQADLSGANLSGAYISSTTKFEGAIL
DDTDWTETLLRKDIQAYLCEKAKGTNPQTGVDTQESLFCPLD*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR0016465peptide_repeat
IPR044213At2g44920-like