Ggra4008.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4008.t1
Unique NameGgra4008.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length243
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:330285..331107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX49721
PFAMsPentapeptide
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009543,GO:0009579,GO:0016020,GO:0031976,GO:0031977,GO:0031978,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
Evalue6.22e-13
EggNOG OGsCOG1357@1|root,2QQA1@2759|Eukaryota
DescriptionPentapeptide repeats (9 copies)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4008Ggra4008Gracilaria gracilis GNS1m malegenetig00000908_pilon 330285..331107 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4008.t1Ggra4008.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 330285..331107 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4008.t1.stop1Ggra4008.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 330285..330287 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4008.t1.CDS1Ggra4008.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 330285..330509 -
Ggra4008.t1.CDS2Ggra4008.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000908_pilon 330604..331107 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4008.t1.exon1Ggra4008.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 330285..330509 -
Ggra4008.t1.exon2Ggra4008.t1.exon2Gracilaria gracilis GNS1m maleexontig00000908_pilon 330604..331107 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4008.t1.intron1Ggra4008.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000908_pilon 330510..330603 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4008.t1.start1Ggra4008.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 331105..331107 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4008.t1 ID=Ggra4008.t1|Name=Ggra4008.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=243bp
MEHGAQTPLPQAHAPPITTAFVPFHPFVRTSTQCHSPPVPRNVTTCSTTQ
PPRWRQALTTAAAVALISTTAAHCLAADTDVRPQLKVPGGSASTSGGVAG
SRSVIKTVTRGVNLEGADFSNQDFEGVSFQQSILRQANFSNCNLRNASFF
DADVSGANFSNADLRGVNFELASLRQADLSGANLSGAYISSTTKFEGAIL
DDTDWTETLLRKDIQAYLCEKAKGTNPQTGVDTQESLFCPLD*
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spliced messenger RNA

>Ggra4008.t1 ID=Ggra4008.t1|Name=Ggra4008.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=729bp|location=Sequence derived from alignment at tig00000908_pilon:330285..331107- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCATGGAGCACAAACGCCGCTTCCCCAAGCGCATGCTCCTCCCAT
AACCACGGCGTTCGTACCATTTCACCCATTTGTACGAACAAGCACGCAAT
GTCATTCTCCACCCGTGCCGCGAAACGTCACAACCTGCAGTACTACACAG
CCGCCACGATGGAGACAAGCGCTCACAACCGCAGCCGCAGTCGCGCTCAT
ATCCACCACGGCAGCGCATTGCTTGGCGGCGGACACGGACGTGCGCCCTC
AACTCAAAGTGCCCGGCGGTTCGGCTAGCACCTCGGGTGGCGTGGCTGGC
TCTCGGTCCGTCATAAAAACCGTCACTCGTGGCGTCAATCTTGAGGGGGC
AGACTTTTCTAACCAGGACTTTGAAGGCGTGTCGTTCCAACAATCCATCC
TACGTCAAGCCAATTTCAGCAACTGCAACCTGCGAAACGCTTCCTTCTTC
GACGCCGATGTGTCTGGCGCAAACTTCTCCAATGCTGATCTGCGTGGCGT
CAACTTTGAACTTGCGAGTCTGAGACAGGCTGATCTCAGTGGTGCCAACC
TTTCGGGTGCCTACATTAGTTCCACCACCAAGTTCGAAGGCGCCATTCTT
GATGATACTGACTGGACTGAAACGCTACTTCGCAAGGATATACAAGCGTA
TCTTTGTGAGAAAGCTAAAGGAACAAACCCTCAAACTGGCGTCGATACTC
AAGAGAGCTTGTTTTGTCCTCTCGATTAG
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protein sequence of Ggra4008.t1

>Ggra4008.t1 ID=Ggra4008.t1|Name=Ggra4008.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=243bp
MEHGAQTPLPQAHAPPITTAFVPFHPFVRTSTQCHSPPVPRNVTTCSTTQ
PPRWRQALTTAAAVALISTTAAHCLAADTDVRPQLKVPGGSASTSGGVAG
SRSVIKTVTRGVNLEGADFSNQDFEGVSFQQSILRQANFSNCNLRNASFF
DADVSGANFSNADLRGVNFELASLRQADLSGANLSGAYISSTTKFEGAIL
DDTDWTETLLRKDIQAYLCEKAKGTNPQTGVDTQESLFCPLD*
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mRNA from alignment at tig00000908_pilon:330285..331107-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4008.t1 ID=Ggra4008.t1|Name=Ggra4008.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=823bp|location=Sequence derived from alignment at tig00000908_pilon:330285..331107- (Gracilaria gracilis GNS1m male)
ATGGAGCATGGAGCACAAACGCCGCTTCCCCAAGCGCATGCTCCTCCCAT
AACCACGGCGTTCGTACCATTTCACCCATTTGTACGAACAAGCACGCAAT
GTCATTCTCCACCCGTGCCGCGAAACGTCACAACCTGCAGTACTACACAG
CCGCCACGATGGAGACAAGCGCTCACAACCGCAGCCGCAGTCGCGCTCAT
ATCCACCACGGCAGCGCATTGCTTGGCGGCGGACACGGACGTGCGCCCTC
AACTCAAAGTGCCCGGCGGTTCGGCTAGCACCTCGGGTGGCGTGGCTGGC
TCTCGGTCCGTCATAAAAACCGTCACTCGTGGCGTCAATCTTGAGGGGGC
AGACTTTTCTAACCAGGACTTTGAAGGCGTGTCGTTCCAACAATCCATCC
TACGTCAAGCCAATTTCAGCAACTGCAACCTGCGAAACGCTTCCTTCTTC
GACGCCGATGTGTCTGGCGCAAACTTCTCCAATGCTGATCTGCGTGGCGT
CAACGTAAGTGACAATCTTTCCGTGCTGATTCCGTGTTGAACGCTAAGCG
ACAAACTAATCACAGCGTGCGTCTATGCTGTGCGCCTGCGCGCAAAAGTT
TGAACTTGCGAGTCTGAGACAGGCTGATCTCAGTGGTGCCAACCTTTCGG
GTGCCTACATTAGTTCCACCACCAAGTTCGAAGGCGCCATTCTTGATGAT
ACTGACTGGACTGAAACGCTACTTCGCAAGGATATACAAGCGTATCTTTG
TGAGAAAGCTAAAGGAACAAACCCTCAAACTGGCGTCGATACTCAAGAGA
GCTTGTTTTGTCCTCTCGATTAG
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Coding sequence (CDS) from alignment at tig00000908_pilon:330285..331107-

>Ggra4008.t1 ID=Ggra4008.t1|Name=Ggra4008.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=729bp|location=Sequence derived from alignment at tig00000908_pilon:330285..331107- (Gracilaria gracilis GNS1m male)
ATGGAGCATGGAGCACAAACGCCGCTTCCCCAAGCGCATGCTCCTCCCAT
AACCACGGCGTTCGTACCATTTCACCCATTTGTACGAACAAGCACGCAAT
GTCATTCTCCACCCGTGCCGCGAAACGTCACAACCTGCAGTACTACACAG
CCGCCACGATGGAGACAAGCGCTCACAACCGCAGCCGCAGTCGCGCTCAT
ATCCACCACGGCAGCGCATTGCTTGGCGGCGGACACGGACGTGCGCCCTC
AACTCAAAGTGCCCGGCGGTTCGGCTAGCACCTCGGGTGGCGTGGCTGGC
TCTCGGTCCGTCATAAAAACCGTCACTCGTGGCGTCAATCTTGAGGGGGC
AGACTTTTCTAACCAGGACTTTGAAGGCGTGTCGTTCCAACAATCCATCC
TACGTCAAGCCAATTTCAGCAACTGCAACCTGCGAAACGCTTCCTTCTTC
GACGCCGATGTGTCTGGCGCAAACTTCTCCAATGCTGATCTGCGTGGCGT
CAACTTTGAACTTGCGAGTCTGAGACAGGCTGATCTCAGTGGTGCCAACC
TTTCGGGTGCCTACATTAGTTCCACCACCAAGTTCGAAGGCGCCATTCTT
GATGATACTGACTGGACTGAAACGCTACTTCGCAAGGATATACAAGCGTA
TCTTTGTGAGAAAGCTAAAGGAACAAACCCTCAAACTGGCGTCGATACTC
AAGAGAGCTTGTTTTGTCCTCTCGATTAG
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