Ggra4002.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4002.t1
Unique NameGgra4002.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length311
Homology
BLAST of Ggra4002.t1 vs. uniprot
Match: A0A2V3IRQ4 (DNA repair protein XRCC2-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRQ4_9FLOR)

HSP 1 Score: 330 bits (847), Expect = 5.330e-110
Identity = 165/312 (52.88%), Postives = 234/312 (75.00%), Query Frame = 0
Query:    1 MTSESISQAIAKRLGSYPLSGK---IDKALPPIIATGVGILDEVDQNPVRLGSLVDISGVTMSGKTQLLHVITAHILLDQSNEKGSVVCWFDLNRGLDPDRLRHLMRLKHNKN-SNINHDDHIDKLAGLKVYYPSSTIAMCASLHALEDFISTEEGQGVRAVVIDSLGSFHYIDKYNFDNSVADTSVRKQSHELVLGKVIENLLSLRKVVVFASKACLYDETTLDVPWPFPQSGVPMVPKEFMPDLWKNLVTHLLLMYHIE-TPSEGQSSYRRGIVAMRYPEPLRSNIRRAVISAAAVAMFDNDGVVIDSLH 307
            M+ + +S+AIA RLG++ +      +D+    ++ TG+ +LDE    PVRLGSL+D++GV++SGKTQ+LH I A+ LL+++   G VVCW+DLNRGLDP+RLR ++  K  +  SN+   D I  L GL VY PSST+++CAS+H L+ F+S E G GV+ V+IDSLGSFHY+DKY FD+ + D+S  KQS ELVL +V+E +LSLRKVVV+ SK+CL+DE  LD+PWPFP++GVP +PK+FMPDLWKNL +H++LMYHIE T S+  +  RRG+VAM Y +P ++ IR+ V+ +A++A  +NDG+  +SLH
Sbjct:    1 MSPDPVSRAIAARLGTFAIPRNRLTVDRGAA-VVRTGLAVLDETRDMPVRLGSLIDVTGVSLSGKTQVLHFIAAYALLNRTCGNGPVVCWYDLNRGLDPNRLRQMIISKQRQGGSNVTERD-ISDLDGLLVYRPSSTLSLCASIHDLKRFLSAE-GAGVQTVIIDSLGSFHYMDKYEFDSGLRDSSTMKQSIELVLARVLEPILSLRKVVVYVSKSCLFDEVKLDIPWPFPRAGVPSMPKDFMPDLWKNLTSHIILMYHIESTSSDYNNGARRGVVAMYYKDPQKNLIRKPVVGSASLATINNDGLFFESLH 309          
BLAST of Ggra4002.t1 vs. uniprot
Match: R7Q2X9 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q2X9_CHOCR)

HSP 1 Score: 116 bits (290), Expect = 7.750e-28
Identity = 62/155 (40.00%), Postives = 97/155 (62.58%), Query Frame = 0
Query:  155 VRAVVIDSLGSFHYIDKYNFDNS-VADTSVRKQSHELVLGKVIENLLSLRKVVVFASKACLYDETTLDVPWPFPQSGVPMVPKEFMPDLWKNLVTHLLLMYHIETPSEGQSS-------YRRGIVAMRYPEPLRSNIRRAVISAAAVAMFDNDGV 301
            VR V+ID+LG+FHY+DK+    S V + +    ++E VL  V+  LL  +KV+VFASK+ L++E  L V WPF Q+G+P +P+EFMP  W+++  H +L+Y     ++G+S+        RRGIV++   E   S IR   ++AA+    D+DG+
Sbjct:   35 VRNVIIDALGTFHYLDKFQISTSDVREKAPGSGTNEFVLVNVLRELLKSQKVIVFASKSALFEEEALGVKWPFSQAGIPSIPREFMPSSWRSISLHTVLLYFT---ADGRSAEAHERIDQRRGIVSLLRNED-NSFIREMTVTAASTIRIDSDGI 185          
BLAST of Ggra4002.t1 vs. uniprot
Match: A0A1Q3BCH8 (RECA_2 domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3BCH8_CEPFO)

HSP 1 Score: 62.0 bits (149), Expect = 2.620e-7
Identity = 60/236 (25.42%), Postives = 111/236 (47.03%), Query Frame = 0
Query:   45 PVRLGSLVDISGVTMSGKTQLL-HVITAHILLDQSNEKGSVVCWFDLNRGLDPDRLRHLMRLKHNKNSNINHDDH------IDKLAGLKVYYPSSTIAMCASLHALEDFISTEEGQGVRAVVIDSLGSFHYIDKYNFDNSVADTSVRK----QSHELVLGKVIENLLSLRKVVVFASKACLYDE--TTLDVPWPFPQ------------SGVPMVP--KEFMPDLWKNLVTHLLLM 253
            P+RLG+++++ G + SGKT +L       IL  +    G +V + DL+   D  RL HL+  +     N N D H      + +   L+ Y     I+   +LH          G GVR ++ID++G+FH++D+     +    + RK    QS    + + I+ LL +  +++ ++K  +  +  +T +  W F +            S     P  +E+MP +W++ VTH +++
Sbjct:   37 PLRLGNVIELVGPSPSGKTHILMEAAITCILPREYGGLGHLVIFIDLDCRFDISRLSHLLNHRILL-LNANDDLHQLFVSCMTRFLYLRCYDSLQLISTLKTLHYRLQKERETHGVGVRFLIIDNIGAFHWVDRAA-TQAPPQGNYRKCLSLQSVSEAVVEEIKKLLLVHPMLLISTKTTVLGDKFSTNEAKWNFGKRSSLDTSYSRNISSSTRQPSYREYMPSVWQSFVTHRIIV 270          
BLAST of Ggra4002.t1 vs. uniprot
Match: A0A2G5BCH6 (Rad51 domain-containing protein n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5BCH6_COERN)

HSP 1 Score: 60.1 bits (144), Expect = 1.070e-6
Identity = 45/142 (31.69%), Postives = 75/142 (52.82%), Query Frame = 0
Query:   33 TGVGILDEVDQNPVRLGSLVDISGVTMSGKTQLLH-VITAHILLDQSNEKGSVVCWFDLNRGLDPDRLRHLMRLKHNKNSNINHDDHI--DKLAGLKVYYPSSTIAMCASLHALEDFISTEEGQGVRAVVIDSLGSFHYIDK 171
            TGV  +D   +      ++V+++G   SGKTQ L+ +  AH L     E+G VV + D++  +D  +L   MR           DD +  + L  + V+ P++T+A+ A+L  L  ++     + V AVV+D LGS H+ID+
Sbjct:   41 TGVEAIDAALRQTDGTQTVVELAGTAGSGKTQTLYRICAAHALAGADGERGHVV-FVDVDGRMDVRQLAQTMRATAG-------DDAVAAEALQRVHVFAPATTVALIATLATLGVYVGARRAR-VTAVVVDGLGSNHWIDQ 173          
BLAST of Ggra4002.t1 vs. uniprot
Match: DNA repair protein XRCC2 homolog n=2 Tax=Maleae TaxID=721813 RepID=UPI000511508D (DNA repair protein XRCC2 homolog n=2 Tax=Maleae TaxID=721813 RepID=UPI000511508D)

HSP 1 Score: 58.5 bits (140), Expect = 3.800e-6
Identity = 57/245 (23.27%), Postives = 115/245 (46.94%), Query Frame = 0
Query:   37 ILDEVDQNPVRLGSLVDISGVTMSGKTQLLHVITAHILLDQS------NEKGSVVCWFDLNRGLDPDRLRHLMRLK-HNKNSNINHDDHIDKLAG-----LKVYYPSSTIAMCASLHALEDFISTEEGQGVRAVVIDSLGSFHYIDKYNFDNSVADTSVRKQSHELVLGKVIENLLSLRKV---VVFASKACL----YDETTLDVPWPFPQ--------SGVPMVP-KEFMPDLWKNLVTHLLLM 253
            ++  + + P+R+G++V++ G + S KT +L     + +L +            +V + DL+   D  RL  +++L+    N ++N+D+ +  L       ++ Y     +A   ++H        E    +  ++IDS+GSFH+ID+ +    + D   ++ S + V   V++ +  L+ V   +V A+K  +    Y          FP+        S    +P +E+MP +W++ VTH LL+
Sbjct:   28 LIPPLHRVPLRVGNVVELVGPSSSAKTLILIQAAVNCILPKEWNGVHYGGLERLVMFLDLDCRFDILRLSEVLKLRIMEPNGSMNYDEGLFNLCMRRFLYVRCYDSRQFLATLKTMHYRLRKEKEEHHVSIYLLMIDSIGSFHWIDRGSTFFPLGDEKRKRLSLQSVSDAVVQEIRKLQLVHPMLVIATKEIILGNAYGAYEAKQNTSFPEVSDLRNSTSNTQQLPYREYMPSVWQSFVTHKLLV 272          
The following BLAST results are available for this feature:
BLAST of Ggra4002.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IRQ45.330e-11052.88DNA repair protein XRCC2-like n=1 Tax=Gracilariops... [more]
R7Q2X97.750e-2840.00Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1Q3BCH82.620e-725.42RECA_2 domain-containing protein n=1 Tax=Cephalotu... [more]
A0A2G5BCH61.070e-631.69Rad51 domain-containing protein n=1 Tax=Coemansia ... [more]
DNA repair protein XRCC2 homolog n=2 Tax=Maleae TaxID=721813 RepID=UPI000511508D3.800e-623.27DNA repair protein XRCC2 homolog n=2 Tax=Maleae Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 29..276
e-value: 7.5E-19
score: 70.3
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 30..184
IPR013632DNA recombination and repair protein Rad51-like, C-terminalPFAMPF08423Rad51coord: 31..172
e-value: 2.5E-7
score: 30.2
IPR030547DNA repair protein XRCC2PANTHERPTHR46644DNA REPAIR PROTEIN XRCC2coord: 3..289

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:319171..320168 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4002.t1Ggra4002.t1Gracilaria gracilis GNS1m malemRNAtig00000908_pilon 319171..320168 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4002.t1 ID=Ggra4002.t1|Name=Ggra4002.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=311bp
MTSESISQAIAKRLGSYPLSGKIDKALPPIIATGVGILDEVDQNPVRLGS
LVDISGVTMSGKTQLLHVITAHILLDQSNEKGSVVCWFDLNRGLDPDRLR
HLMRLKHNKNSNINHDDHIDKLAGLKVYYPSSTIAMCASLHALEDFISTE
EGQGVRAVVIDSLGSFHYIDKYNFDNSVADTSVRKQSHELVLGKVIENLL
SLRKVVVFASKACLYDETTLDVPWPFPQSGVPMVPKEFMPDLWKNLVTHL
LLMYHIETPSEGQSSYRRGIVAMRYPEPLRSNIRRAVISAAAVAMFDNDG
VVIDSLHTVS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR013632DNA_recomb/repair_Rad51_C
IPR030547XRCC2