Ggra4002.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4002.t1
Unique NameGgra4002.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length311
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:319171..320168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5286.M7WQF5
PFAMsRad51
Max annot lvl4751|Fungi
KEGG koko:K10879
KEGG Pathwayko03440,map03440
Evalue5.46e-10
EggNOG OGsKOG2859@1|root,KOG2859@2759|Eukaryota,3A51P@33154|Opisthokonta,3P46M@4751|Fungi,3VC7F@5204|Basidiomycota
DescriptionRad51 family DNA repair protein
COG categoryS
BRITEko00000,ko00001,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4002Ggra4002Gracilaria gracilis GNS1m malegenetig00000908_pilon 319171..320168 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4002.t1Ggra4002.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 319171..320168 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4002.t1.stop1Ggra4002.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 319171..319173 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4002.t1.CDS1Ggra4002.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 319171..319640 -
Ggra4002.t1.CDS2Ggra4002.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000908_pilon 319706..320168 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4002.t1.exon1Ggra4002.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 319171..319640 -
Ggra4002.t1.exon2Ggra4002.t1.exon2Gracilaria gracilis GNS1m maleexontig00000908_pilon 319706..320168 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4002.t1.intron1Ggra4002.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000908_pilon 319641..319705 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4002.t1.start1Ggra4002.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 320166..320168 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4002.t1 ID=Ggra4002.t1|Name=Ggra4002.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=311bp
MTSESISQAIAKRLGSYPLSGKIDKALPPIIATGVGILDEVDQNPVRLGS
LVDISGVTMSGKTQLLHVITAHILLDQSNEKGSVVCWFDLNRGLDPDRLR
HLMRLKHNKNSNINHDDHIDKLAGLKVYYPSSTIAMCASLHALEDFISTE
EGQGVRAVVIDSLGSFHYIDKYNFDNSVADTSVRKQSHELVLGKVIENLL
SLRKVVVFASKACLYDETTLDVPWPFPQSGVPMVPKEFMPDLWKNLVTHL
LLMYHIETPSEGQSSYRRGIVAMRYPEPLRSNIRRAVISAAAVAMFDNDG
VVIDSLHTVS*
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spliced messenger RNA

>Ggra4002.t1 ID=Ggra4002.t1|Name=Ggra4002.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=933bp|location=Sequence derived from alignment at tig00000908_pilon:319171..320168- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCAGCGAAAGTATTTCGCAGGCTATTGCCAAACGACTCGGTAGTTA
TCCTTTGTCTGGGAAGATCGACAAAGCCTTGCCTCCGATCATTGCCACAG
GGGTTGGAATTCTCGATGAAGTGGATCAAAATCCTGTTCGCCTTGGAAGC
CTGGTCGATATCAGTGGTGTGACGATGAGCGGGAAAACTCAGCTGCTGCA
TGTGATTACCGCACATATTCTACTGGACCAGTCCAATGAGAAAGGCTCAG
TGGTGTGTTGGTTTGATCTCAACAGAGGCTTAGATCCAGACCGTCTGAGA
CATTTGATGCGTTTGAAACACAACAAGAACTCCAATATAAACCATGATGA
TCACATCGATAAGTTGGCTGGGCTAAAGGTCTACTATCCGTCATCGACAA
TAGCAATGTGTGCCTCTCTTCATGCTCTGGAGGACTTCATTTCAACTGAG
GAAGGTCAAGGAGTGAGAGCTGTTGTAATAGACTCCCTTGGAAGCTTCCA
TTACATTGATAAGTACAATTTTGATAACAGCGTCGCCGATACGTCAGTGA
GAAAACAGTCCCATGAGTTGGTGCTTGGGAAGGTCATCGAAAATTTGCTT
TCGCTTCGAAAAGTCGTCGTATTCGCAAGCAAAGCCTGCCTCTATGATGA
AACCACACTTGATGTGCCATGGCCATTCCCACAGTCTGGAGTACCAATGG
TACCCAAGGAATTCATGCCCGACTTGTGGAAGAATCTTGTCACACACCTA
CTTCTGATGTACCACATTGAAACTCCCAGCGAGGGACAGAGCAGCTACCG
TCGGGGAATTGTGGCAATGAGGTACCCCGAACCATTAAGATCCAATATCA
GAAGAGCAGTCATTTCTGCAGCAGCTGTTGCAATGTTTGACAATGATGGG
GTGGTCATCGACTCCTTGCATACCGTATCGTGA
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protein sequence of Ggra4002.t1

>Ggra4002.t1 ID=Ggra4002.t1|Name=Ggra4002.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=311bp
MTSESISQAIAKRLGSYPLSGKIDKALPPIIATGVGILDEVDQNPVRLGS
LVDISGVTMSGKTQLLHVITAHILLDQSNEKGSVVCWFDLNRGLDPDRLR
HLMRLKHNKNSNINHDDHIDKLAGLKVYYPSSTIAMCASLHALEDFISTE
EGQGVRAVVIDSLGSFHYIDKYNFDNSVADTSVRKQSHELVLGKVIENLL
SLRKVVVFASKACLYDETTLDVPWPFPQSGVPMVPKEFMPDLWKNLVTHL
LLMYHIETPSEGQSSYRRGIVAMRYPEPLRSNIRRAVISAAAVAMFDNDG
VVIDSLHTVS*
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mRNA from alignment at tig00000908_pilon:319171..320168-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4002.t1 ID=Ggra4002.t1|Name=Ggra4002.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=998bp|location=Sequence derived from alignment at tig00000908_pilon:319171..320168- (Gracilaria gracilis GNS1m male)
ATGACCAGCGAAAGTATTTCGCAGGCTATTGCCAAACGACTCGGTAGTTA
TCCTTTGTCTGGGAAGATCGACAAAGCCTTGCCTCCGATCATTGCCACAG
GGGTTGGAATTCTCGATGAAGTGGATCAAAATCCTGTTCGCCTTGGAAGC
CTGGTCGATATCAGTGGTGTGACGATGAGCGGGAAAACTCAGCTGCTGCA
TGTGATTACCGCACATATTCTACTGGACCAGTCCAATGAGAAAGGCTCAG
TGGTGTGTTGGTTTGATCTCAACAGAGGCTTAGATCCAGACCGTCTGAGA
CATTTGATGCGTTTGAAACACAACAAGAACTCCAATATAAACCATGATGA
TCACATCGATAAGTTGGCTGGGCTAAAGGTCTACTATCCGTCATCGACAA
TAGCAATGTGTGCCTCTCTTCATGCTCTGGAGGACTTCATTTCAACTGAG
GAAGGTCAAGGAGGTAAGTAAGCTAGATGAATCTTCAGTCTTTTTTAAGC
CTGTCTAACGTTAACAAAATCTACACAGTGAGAGCTGTTGTAATAGACTC
CCTTGGAAGCTTCCATTACATTGATAAGTACAATTTTGATAACAGCGTCG
CCGATACGTCAGTGAGAAAACAGTCCCATGAGTTGGTGCTTGGGAAGGTC
ATCGAAAATTTGCTTTCGCTTCGAAAAGTCGTCGTATTCGCAAGCAAAGC
CTGCCTCTATGATGAAACCACACTTGATGTGCCATGGCCATTCCCACAGT
CTGGAGTACCAATGGTACCCAAGGAATTCATGCCCGACTTGTGGAAGAAT
CTTGTCACACACCTACTTCTGATGTACCACATTGAAACTCCCAGCGAGGG
ACAGAGCAGCTACCGTCGGGGAATTGTGGCAATGAGGTACCCCGAACCAT
TAAGATCCAATATCAGAAGAGCAGTCATTTCTGCAGCAGCTGTTGCAATG
TTTGACAATGATGGGGTGGTCATCGACTCCTTGCATACCGTATCGTGA
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Coding sequence (CDS) from alignment at tig00000908_pilon:319171..320168-

>Ggra4002.t1 ID=Ggra4002.t1|Name=Ggra4002.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=933bp|location=Sequence derived from alignment at tig00000908_pilon:319171..320168- (Gracilaria gracilis GNS1m male)
ATGACCAGCGAAAGTATTTCGCAGGCTATTGCCAAACGACTCGGTAGTTA
TCCTTTGTCTGGGAAGATCGACAAAGCCTTGCCTCCGATCATTGCCACAG
GGGTTGGAATTCTCGATGAAGTGGATCAAAATCCTGTTCGCCTTGGAAGC
CTGGTCGATATCAGTGGTGTGACGATGAGCGGGAAAACTCAGCTGCTGCA
TGTGATTACCGCACATATTCTACTGGACCAGTCCAATGAGAAAGGCTCAG
TGGTGTGTTGGTTTGATCTCAACAGAGGCTTAGATCCAGACCGTCTGAGA
CATTTGATGCGTTTGAAACACAACAAGAACTCCAATATAAACCATGATGA
TCACATCGATAAGTTGGCTGGGCTAAAGGTCTACTATCCGTCATCGACAA
TAGCAATGTGTGCCTCTCTTCATGCTCTGGAGGACTTCATTTCAACTGAG
GAAGGTCAAGGAGTGAGAGCTGTTGTAATAGACTCCCTTGGAAGCTTCCA
TTACATTGATAAGTACAATTTTGATAACAGCGTCGCCGATACGTCAGTGA
GAAAACAGTCCCATGAGTTGGTGCTTGGGAAGGTCATCGAAAATTTGCTT
TCGCTTCGAAAAGTCGTCGTATTCGCAAGCAAAGCCTGCCTCTATGATGA
AACCACACTTGATGTGCCATGGCCATTCCCACAGTCTGGAGTACCAATGG
TACCCAAGGAATTCATGCCCGACTTGTGGAAGAATCTTGTCACACACCTA
CTTCTGATGTACCACATTGAAACTCCCAGCGAGGGACAGAGCAGCTACCG
TCGGGGAATTGTGGCAATGAGGTACCCCGAACCATTAAGATCCAATATCA
GAAGAGCAGTCATTTCTGCAGCAGCTGTTGCAATGTTTGACAATGATGGG
GTGGTCATCGACTCCTTGCATACCGTATCGTGA
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