Ggra3998.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra3998.t1
Unique NameGgra3998.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length741
Homology
BLAST of Ggra3998.t1 vs. uniprot
Match: A0A2V3IVJ4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVJ4_9FLOR)

HSP 1 Score: 219 bits (557), Expect = 5.390e-58
Identity = 214/722 (29.64%), Postives = 318/722 (44.04%), Query Frame = 0
Query:   14 VRVLTPTLLHARARDSLYVLRLGARDARRFTAAAVACDRHHPRRLLACVSHADGAHAVLLLQLPXXXXXRAPQRAVVELAXXXXXXXXXXXXXXXXXXXXXXXHGHAAVCCALRAGXXXXXXXXXXXXXXRRCCQFALLARDAVLSARPSERAPWHVQLRVERALDADNADAPAQLARAPRADARRWVAASRAGDVRLLNAVAHHEVPAAPPLARLLQPVVRLFRSADGAFVLAIGRFRRVLCVGVDARRRVHTHHFLLPPLRAAAAGRRSLALHPFSLHARQIAPRELALQPVADDDGXXXXXXXXXXXXXXXXXXXXXARPLFSHELWHASQLARPPARAAQLAPLLRGVERLSLRGAQQRLCERGVHAALVTSAQLLACAKSAPAPLTVALSVASSPRGLAPPFALLPPPRAARAWLIVRVCSQVCAPLAPLSLRVCVARTPSSSSSSSCALPMAPRRAACTRSFVAPLPPLAPGQQLHVSLPLFLASHAPLHVRVAALFDAPALPHALPLPLHQQLLDVLHCSSASASAAADEHVDASAALLALPFXXXXXXXXPPLQMHSRVVVPFAPPVVRAALGVDAQPAHFRSLLGARFCVLAAPASAGCCAVCVRAPPHVAPFVRAALLRRXXXXXXXXXXXXXXXXRGVREAQVAARLRLARCEPALAAAEQALVDAVRAFDRLESAAHGVGDGVHEWKRALAAASHAYRAWRREGEAVLAP 735
            VR +T  L+HA    +LYVL L       FT A  AC +HHP  +    SH    + +L L LP           V+ L                        H   +       G               +C +     R       PS     H+ L       A +  A   + RAPR     ++  +R G +  ++++   ++P   P A + Q  V +F   D +FV  +G+ R V  +       + +    LP   A      S +L  F+ H+   A  +L LQP +D D                        P  +H ++  S  ++   +   + PLL+ ++RL+LR A+Q   +  V   + T+    A  KSAP PL+V L+V+ SP+G  P F L  PPR+ + ++I  + SQ    L+ LSL++ +A     S+SS   +P   R     +SF APLP L     + VS PL+L+SHAP+   V+   D P+    L L +  +LLD+L  S+  +    D     SAA+ A+PF             HSR+ VP++   V+  L +  +P HFRSLLGA F +L +   A  C + +RAP HV PFVRAALLRR                  +R      +  + +CE + A  E+ LV+AV+ F+ LE+ A    DG   WK +LA A+ AYRAWRREGE +  P
Sbjct:   13 VRAITSHLVHACFPSTLYVLTLDDSATVTFTFATRACAKHHPFSVWIGTSH----NTLLRLTLPECDQ----SIKVINL-----------HPLLLSSPVPHAEHPQLSAVVTHDLGSIFSLLSSHALPETCQCRKTLFCDRGVASFEEPSHGTTTHLPL--SDGCSAHDPHAARLVVRAPRRAPAPFMIITRCGGMYFVHSLFPLQLP--EPFANMYQTPVAVFFPPDCSFVTVVGQLRSVFTLAFVEDDSI-SETIALPQSNA------SFSLDSFAFHSASHAKNQLLLQPTSDVD------------LPPVHIHLHLTPPRITHTMYAFSFHSQSTTKQPAIRPLLQAIDRLTLRSAEQSATDTAVQQNISTALHTFASLKSAPMPLSVTLTVSDSPQGHVPAFHLPHPPRSKQVYVIAHLQSQHSGSLSSLSLQLTLAPHRIKSTSS---MPKPNRNHPHGQSFSAPLPTLTSADCVKVSFPLYLSSHAPVKAAVSLSIDIPS-TEPLELAIGDELLDILSYSNRVSQLGEDT----SAAIFAMPFSDPHKATI----QHSRLCVPYSLTQVQQILSLKPEPTHFRSLLGAPFSLLLSGGRA--CTITLRAPTHVTPFVRAALLRRLMQTKPEPIIVKGIP--NIRTWSKELKGCVEKCESSSAETEEKLVEAVKVFEDLENGAGA--DGTRIWKESLAKAAQAYRAWRREGENIWMP 674          
The following BLAST results are available for this feature:
BLAST of Ggra3998.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IVJ45.390e-5829.64Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 680..700
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..12
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..740
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:310408..312630 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3998.t1Ggra3998.t1Gracilaria gracilis GNS1m malemRNAtig00000908_pilon 310408..312630 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra3998.t1 ID=Ggra3998.t1|Name=Ggra3998.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=741bp
MARAAAAAAAAADVRVLTPTLLHARARDSLYVLRLGARDARRFTAAAVAC
DRHHPRRLLACVSHADGAHAVLLLQLPPPPPPRAPQRAVVELALPLPPPS
PSDGDGDGVLVLVAAAHGHAAVCCALRAGGDDGGGGGGGDGDERRCCQFA
LLARDAVLSARPSERAPWHVQLRVERALDADNADAPAQLARAPRADARRW
VAASRAGDVRLLNAVAHHEVPAAPPLARLLQPVVRLFRSADGAFVLAIGR
FRRVLCVGVDARRRVHTHHFLLPPLRAAAAGRRSLALHPFSLHARQIAPR
ELALQPVADDDGDGDGGALPCVRIRFDADADADARPLFSHELWHASQLAR
PPARAAQLAPLLRGVERLSLRGAQQRLCERGVHAALVTSAQLLACAKSAP
APLTVALSVASSPRGLAPPFALLPPPRAARAWLIVRVCSQVCAPLAPLSL
RVCVARTPSSSSSSSCALPMAPRRAACTRSFVAPLPPLAPGQQLHVSLPL
FLASHAPLHVRVAALFDAPALPHALPLPLHQQLLDVLHCSSASASAAADE
HVDASAALLALPFAAAAAAAAPPLQMHSRVVVPFAPPVVRAALGVDAQPA
HFRSLLGARFCVLAAPASAGCCAVCVRAPPHVAPFVRAALLRRLLRAAPP
SASSPPPPPRGVREAQVAARLRLARCEPALAAAEQALVDAVRAFDRLESA
AHGVGDGVHEWKRALAAASHAYRAWRREGEAVLAPMAARD*
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