Ggra3998.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3998.t1
Unique Name	Ggra3998.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	741

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000908_pilon	contig	tig00000908_pilon:310408..312630 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3998	Ggra3998	Gracilaria gracilis GNS1m male	gene	tig00000908_pilon 310408..312630 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3998.t1.start1	Ggra3998.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000908_pilon 310408..310410 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3998.t1.CDS1	Ggra3998.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000908_pilon 310408..312630 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3998.t1.exon1	Ggra3998.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000908_pilon 310408..312630 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3998.t1.stop1	Ggra3998.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000908_pilon 312628..312630 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3998.t1	Ggra3998.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000908_pilon 310408..312630 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000908_pilon:310408..312630+
coding sequence from alignment at tig00000908_pilon:310408..312630+

mRNA sequence

>Ggra3998.t1 ID=Ggra3998.t1|Name=Ggra3998.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=741bp
MARAAAAAAAAADVRVLTPTLLHARARDSLYVLRLGARDARRFTAAAVAC
DRHHPRRLLACVSHADGAHAVLLLQLPPPPPPRAPQRAVVELALPLPPPS
PSDGDGDGVLVLVAAAHGHAAVCCALRAGGDDGGGGGGGDGDERRCCQFA
LLARDAVLSARPSERAPWHVQLRVERALDADNADAPAQLARAPRADARRW
VAASRAGDVRLLNAVAHHEVPAAPPLARLLQPVVRLFRSADGAFVLAIGR
FRRVLCVGVDARRRVHTHHFLLPPLRAAAAGRRSLALHPFSLHARQIAPR
ELALQPVADDDGDGDGGALPCVRIRFDADADADARPLFSHELWHASQLAR
PPARAAQLAPLLRGVERLSLRGAQQRLCERGVHAALVTSAQLLACAKSAP
APLTVALSVASSPRGLAPPFALLPPPRAARAWLIVRVCSQVCAPLAPLSL
RVCVARTPSSSSSSSCALPMAPRRAACTRSFVAPLPPLAPGQQLHVSLPL
FLASHAPLHVRVAALFDAPALPHALPLPLHQQLLDVLHCSSASASAAADE
HVDASAALLALPFAAAAAAAAPPLQMHSRVVVPFAPPVVRAALGVDAQPA
HFRSLLGARFCVLAAPASAGCCAVCVRAPPHVAPFVRAALLRRLLRAAPP
SASSPPPPPRGVREAQVAARLRLARCEPALAAAEQALVDAVRAFDRLESA
AHGVGDGVHEWKRALAAASHAYRAWRREGEAVLAPMAARD*

spliced messenger RNA

>Ggra3998.t1 ID=Ggra3998.t1|Name=Ggra3998.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2223bp|location=Sequence derived from alignment at tig00000908_pilon:310408..312630+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGcgccgccgccgccgccgccgccgccgccgACGTGCGCGTGCT
CACGCCCACGCTGCTGCACGCGCGCGCGCGCGACTCGCTGTACGTTTTGC
GCCTTGGCGCGCGCGACGCGCGCCGCTTCACGGCCGCGGCCGTCGCGTGC
GATCGCCACCACCCGCGCCGCTTGCTCGCGTGCGTGTCTCACGCCGACGG
CGCGCACGCCGTGCTGCTGCTGCAGCTGCCGCCGCCGCCGCCGCCGCGCG
CACCGCAGCGCGCCGTCGTGGAGCTCGCGCTGCCGCTGCCGCCGCCATCG
CCGAGCGACGGCGACGGCGACGGCGTGCTGGTGCTCGTCGCCGCCGCGCA
CGGCCACGCCGCCGTATGCTGCGCGCTGCGCGCCGGCGGTGACGACGGCG
GCGGCGGCGGCGGCGGCGACGGCGACGAGCGCCGCTGCTGCCAGTTTGCG
CTGCTGGCGCGCGACGCCGTGCTGAGCGCGCGCCCGTCGGAGCGCGCGCC
CTGGCACGTGCAGCTGCGCGTGGAGCGCGCTCTCGACGCCGACAACGCCG
ACGCGCCCGCGCAGCTAGCGCGCGCGCCGCGCGCCGACGCGCGCCGCTGG
GTGGCGGCGTCGCGCGCGGGCGACGTGCGTCTGCTCAACGCCGTGGCGCA
CCACGAGGTGCCCGCCGCGCCGCCGCTGGCGCGCCTGCTGCAGCCGGTGG
TGCGCCTGTTCCGCTCGGCGGACGGCGCGTTCGTGCTGGCGATCGGCCGC
TTCCGTCGCGTGCTTTGCGTGGGAGTGGACGCGCGTCGCCGCGTGCATAC
GCACCACTTCTTGCTGCCGCCGCTGCGCGCCGCCGCCGCCGGCCGCCGCT
CGCTCGCGCTGCACCCGTTCTCGCTGCACGCGCGCCAGATCGCGCCCCGC
GAGCTGGCGCTGCAGCCCGTCGCCGACGACGACGGCGACGGCGACGGCGG
CGCGCTGCCGTGCGTGCGCATCCGCTTCGACGCCGACGCCGACGCCGACG
CGCGGCCGTTGTTCTCGCACGAGCTGTGGCACGCCTCGCAGCTGGCGCGG
CCGCCAGCGCGCGCCGCGCAGCTGGCGCCGCTGCTGCGCGGCGTGGAGCG
GCTGTCGCTGCGCGGCGCGCAGCAGCGCTTGTGCGAGCGCGGCGTGCACG
CGGCGCTGGTCACCAGCGCGCAGCTGCTGGCGTGCGCAAAGAGCGCGCCC
GCGCCGCTCACCGTGGCACTGTCCGTGGCAAGCTCGCCGCGCGGACTGGC
GCCGCCCTTCGCGCTGCTGCCGCCGCCGCGCGCCGCGCGCGCCTGGCTCA
TCGTGCGAGTGTGCTCGCAAGTGTGCGCGCCGCTGGCGCCGCTTTCGCTG
CGCGTGTGCGTGGCGCGCACGCCGTCGTCGTCGTCGTCGTCGTCGTGCGC
GCTGCCGATGGCGCCGCGCCGCGCCGCGTGCACGCGCTCGTTTGTGGCGC
CGCTGCCGCCGCTCGCGCCGGGCCAACAGCTGCACGTGAGCTTGCCGCTG
TTCTTGGCGTCGCACGCGCCGCTGCACGTGCGCGTGGCCGCGCTGTTCGA
CGCGCCGGCGCTGCCGCATGCGCTGCCGCTGCCGCTGCACCAGCAGCTGC
TGGACGTGCTGCACTGCTCCTCCGCAAGCGCCTCGGCCGCCGCCGACGAG
CACGTCGACGCCAGCGCCGCGCTGCTCGCGCTGCCGTTCGCCGCCGCCGC
CGCCGCCGCTGCGCCGCCGCTGCAGATGCACTCGCGCGTGGTGGTGCCGT
TCGCGCCGCCTGTGGTGCGCGCGGCGCTCGGGGTGGACGCGCAGCCCGCG
CACTTCCGCTCGCTGCTGGGCGCGCGCTTCTGCGTGCTGGCGGCGCCCGC
GTCCGCCGGGTGCTGCGCCGTGTGCGTGCGCGCGCCGCCGCACGTGGCGC
CGTTTGTGCGCGCCGCGCTGCTGCGCCGCCTGCTACGCGCCGCGCCTCCG
TCGGCGTCGTCGCCGCCGCCGCCGCCGCGCGGCGTGAGGGAGGCGCAGGT
GGCCGCAAGGCTGCGGCTCGCGCGCTGCGAGCCCGCGCTCGCGGCCGCGG
AGCAGGCGCTTGTCGACGCTGTTCGCGCATTCGATAGGCTGGAGAGCGCC
GCGCATGGCGTCGGCGACGGCGTGCACGAGTGGAAGCGCGCTCTGGCTGC
TGCTTCGCATGCGTACCGCGCGTGGAGGAGGGAGGGCGAGGCTGTGTTGG
CGCCCATGGCTGCGCGCGATTGA

protein sequence of Ggra3998.t1

>Ggra3998.t1 ID=Ggra3998.t1|Name=Ggra3998.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=741bp
MARAAAAAAAAADVRVLTPTLLHARARDSLYVLRLGARDARRFTAAAVAC
DRHHPRRLLACVSHADGAHAVLLLQLPPPPPPRAPQRAVVELALPLPPPS
PSDGDGDGVLVLVAAAHGHAAVCCALRAGGDDGGGGGGGDGDERRCCQFA
LLARDAVLSARPSERAPWHVQLRVERALDADNADAPAQLARAPRADARRW
VAASRAGDVRLLNAVAHHEVPAAPPLARLLQPVVRLFRSADGAFVLAIGR
FRRVLCVGVDARRRVHTHHFLLPPLRAAAAGRRSLALHPFSLHARQIAPR
ELALQPVADDDGDGDGGALPCVRIRFDADADADARPLFSHELWHASQLAR
PPARAAQLAPLLRGVERLSLRGAQQRLCERGVHAALVTSAQLLACAKSAP
APLTVALSVASSPRGLAPPFALLPPPRAARAWLIVRVCSQVCAPLAPLSL
RVCVARTPSSSSSSSCALPMAPRRAACTRSFVAPLPPLAPGQQLHVSLPL
FLASHAPLHVRVAALFDAPALPHALPLPLHQQLLDVLHCSSASASAAADE
HVDASAALLALPFAAAAAAAAPPLQMHSRVVVPFAPPVVRAALGVDAQPA
HFRSLLGARFCVLAAPASAGCCAVCVRAPPHVAPFVRAALLRRLLRAAPP
SASSPPPPPRGVREAQVAARLRLARCEPALAAAEQALVDAVRAFDRLESA
AHGVGDGVHEWKRALAAASHAYRAWRREGEAVLAPMAARD*

mRNA from alignment at tig00000908_pilon:310408..312630+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3998.t1 ID=Ggra3998.t1|Name=Ggra3998.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2223bp|location=Sequence derived from alignment at tig00000908_pilon:310408..312630+ (Gracilaria gracilis GNS1m male)
ATGGCGCGcgccgccgccgccgccgccgccgccgccgACGTGCGCGTGCT
CACGCCCACGCTGCTGCACGCGCGCGCGCGCGACTCGCTGTACGTTTTGC
GCCTTGGCGCGCGCGACGCGCGCCGCTTCACGGCCGCGGCCGTCGCGTGC
GATCGCCACCACCCGCGCCGCTTGCTCGCGTGCGTGTCTCACGCCGACGG
CGCGCACGCCGTGCTGCTGCTGCAGCTGCCGCCGCCGCCGCCGCCGCGCG
CACCGCAGCGCGCCGTCGTGGAGCTCGCGCTGCCGCTGCCGCCGCCATCG
CCGAGCGACGGCGACGGCGACGGCGTGCTGGTGCTCGTCGCCGCCGCGCA
CGGCCACGCCGCCGTATGCTGCGCGCTGCGCGCCGGCGGTGACGACGGCG
GCGGCGGCGGCGGCGGCGACGGCGACGAGCGCCGCTGCTGCCAGTTTGCG
CTGCTGGCGCGCGACGCCGTGCTGAGCGCGCGCCCGTCGGAGCGCGCGCC
CTGGCACGTGCAGCTGCGCGTGGAGCGCGCTCTCGACGCCGACAACGCCG
ACGCGCCCGCGCAGCTAGCGCGCGCGCCGCGCGCCGACGCGCGCCGCTGG
GTGGCGGCGTCGCGCGCGGGCGACGTGCGTCTGCTCAACGCCGTGGCGCA
CCACGAGGTGCCCGCCGCGCCGCCGCTGGCGCGCCTGCTGCAGCCGGTGG
TGCGCCTGTTCCGCTCGGCGGACGGCGCGTTCGTGCTGGCGATCGGCCGC
TTCCGTCGCGTGCTTTGCGTGGGAGTGGACGCGCGTCGCCGCGTGCATAC
GCACCACTTCTTGCTGCCGCCGCTGCGCGCCGCCGCCGCCGGCCGCCGCT
CGCTCGCGCTGCACCCGTTCTCGCTGCACGCGCGCCAGATCGCGCCCCGC
GAGCTGGCGCTGCAGCCCGTCGCCGACGACGACGGCGACGGCGACGGCGG
CGCGCTGCCGTGCGTGCGCATCCGCTTCGACGCCGACGCCGACGCCGACG
CGCGGCCGTTGTTCTCGCACGAGCTGTGGCACGCCTCGCAGCTGGCGCGG
CCGCCAGCGCGCGCCGCGCAGCTGGCGCCGCTGCTGCGCGGCGTGGAGCG
GCTGTCGCTGCGCGGCGCGCAGCAGCGCTTGTGCGAGCGCGGCGTGCACG
CGGCGCTGGTCACCAGCGCGCAGCTGCTGGCGTGCGCAAAGAGCGCGCCC
GCGCCGCTCACCGTGGCACTGTCCGTGGCAAGCTCGCCGCGCGGACTGGC
GCCGCCCTTCGCGCTGCTGCCGCCGCCGCGCGCCGCGCGCGCCTGGCTCA
TCGTGCGAGTGTGCTCGCAAGTGTGCGCGCCGCTGGCGCCGCTTTCGCTG
CGCGTGTGCGTGGCGCGCACGCCGTCGTCGTCGTCGTCGTCGTCGTGCGC
GCTGCCGATGGCGCCGCGCCGCGCCGCGTGCACGCGCTCGTTTGTGGCGC
CGCTGCCGCCGCTCGCGCCGGGCCAACAGCTGCACGTGAGCTTGCCGCTG
TTCTTGGCGTCGCACGCGCCGCTGCACGTGCGCGTGGCCGCGCTGTTCGA
CGCGCCGGCGCTGCCGCATGCGCTGCCGCTGCCGCTGCACCAGCAGCTGC
TGGACGTGCTGCACTGCTCCTCCGCAAGCGCCTCGGCCGCCGCCGACGAG
CACGTCGACGCCAGCGCCGCGCTGCTCGCGCTGCCGTTCGCCGCCGCCGC
CGCCGCCGCTGCGCCGCCGCTGCAGATGCACTCGCGCGTGGTGGTGCCGT
TCGCGCCGCCTGTGGTGCGCGCGGCGCTCGGGGTGGACGCGCAGCCCGCG
CACTTCCGCTCGCTGCTGGGCGCGCGCTTCTGCGTGCTGGCGGCGCCCGC
GTCCGCCGGGTGCTGCGCCGTGTGCGTGCGCGCGCCGCCGCACGTGGCGC
CGTTTGTGCGCGCCGCGCTGCTGCGCCGCCTGCTACGCGCCGCGCCTCCG
TCGGCGTCGTCGCCGCCGCCGCCGCCGCGCGGCGTGAGGGAGGCGCAGGT
GGCCGCAAGGCTGCGGCTCGCGCGCTGCGAGCCCGCGCTCGCGGCCGCGG
AGCAGGCGCTTGTCGACGCTGTTCGCGCATTCGATAGGCTGGAGAGCGCC
GCGCATGGCGTCGGCGACGGCGTGCACGAGTGGAAGCGCGCTCTGGCTGC
TGCTTCGCATGCGTACCGCGCGTGGAGGAGGGAGGGCGAGGCTGTGTTGG
CGCCCATGGCTGCGCGCGATTGA

Coding sequence (CDS) from alignment at tig00000908_pilon:310408..312630+

>Ggra3998.t1 ID=Ggra3998.t1|Name=Ggra3998.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2223bp|location=Sequence derived from alignment at tig00000908_pilon:310408..312630+ (Gracilaria gracilis GNS1m male)
ATGGCGCGcgccgccgccgccgccgccgccgccgccgACGTGCGCGTGCT
CACGCCCACGCTGCTGCACGCGCGCGCGCGCGACTCGCTGTACGTTTTGC
GCCTTGGCGCGCGCGACGCGCGCCGCTTCACGGCCGCGGCCGTCGCGTGC
GATCGCCACCACCCGCGCCGCTTGCTCGCGTGCGTGTCTCACGCCGACGG
CGCGCACGCCGTGCTGCTGCTGCAGCTGCCGCCGCCGCCGCCGCCGCGCG
CACCGCAGCGCGCCGTCGTGGAGCTCGCGCTGCCGCTGCCGCCGCCATCG
CCGAGCGACGGCGACGGCGACGGCGTGCTGGTGCTCGTCGCCGCCGCGCA
CGGCCACGCCGCCGTATGCTGCGCGCTGCGCGCCGGCGGTGACGACGGCG
GCGGCGGCGGCGGCGGCGACGGCGACGAGCGCCGCTGCTGCCAGTTTGCG
CTGCTGGCGCGCGACGCCGTGCTGAGCGCGCGCCCGTCGGAGCGCGCGCC
CTGGCACGTGCAGCTGCGCGTGGAGCGCGCTCTCGACGCCGACAACGCCG
ACGCGCCCGCGCAGCTAGCGCGCGCGCCGCGCGCCGACGCGCGCCGCTGG
GTGGCGGCGTCGCGCGCGGGCGACGTGCGTCTGCTCAACGCCGTGGCGCA
CCACGAGGTGCCCGCCGCGCCGCCGCTGGCGCGCCTGCTGCAGCCGGTGG
TGCGCCTGTTCCGCTCGGCGGACGGCGCGTTCGTGCTGGCGATCGGCCGC
TTCCGTCGCGTGCTTTGCGTGGGAGTGGACGCGCGTCGCCGCGTGCATAC
GCACCACTTCTTGCTGCCGCCGCTGCGCGCCGCCGCCGCCGGCCGCCGCT
CGCTCGCGCTGCACCCGTTCTCGCTGCACGCGCGCCAGATCGCGCCCCGC
GAGCTGGCGCTGCAGCCCGTCGCCGACGACGACGGCGACGGCGACGGCGG
CGCGCTGCCGTGCGTGCGCATCCGCTTCGACGCCGACGCCGACGCCGACG
CGCGGCCGTTGTTCTCGCACGAGCTGTGGCACGCCTCGCAGCTGGCGCGG
CCGCCAGCGCGCGCCGCGCAGCTGGCGCCGCTGCTGCGCGGCGTGGAGCG
GCTGTCGCTGCGCGGCGCGCAGCAGCGCTTGTGCGAGCGCGGCGTGCACG
CGGCGCTGGTCACCAGCGCGCAGCTGCTGGCGTGCGCAAAGAGCGCGCCC
GCGCCGCTCACCGTGGCACTGTCCGTGGCAAGCTCGCCGCGCGGACTGGC
GCCGCCCTTCGCGCTGCTGCCGCCGCCGCGCGCCGCGCGCGCCTGGCTCA
TCGTGCGAGTGTGCTCGCAAGTGTGCGCGCCGCTGGCGCCGCTTTCGCTG
CGCGTGTGCGTGGCGCGCACGCCGTCGTCGTCGTCGTCGTCGTCGTGCGC
GCTGCCGATGGCGCCGCGCCGCGCCGCGTGCACGCGCTCGTTTGTGGCGC
CGCTGCCGCCGCTCGCGCCGGGCCAACAGCTGCACGTGAGCTTGCCGCTG
TTCTTGGCGTCGCACGCGCCGCTGCACGTGCGCGTGGCCGCGCTGTTCGA
CGCGCCGGCGCTGCCGCATGCGCTGCCGCTGCCGCTGCACCAGCAGCTGC
TGGACGTGCTGCACTGCTCCTCCGCAAGCGCCTCGGCCGCCGCCGACGAG
CACGTCGACGCCAGCGCCGCGCTGCTCGCGCTGCCGTTCGCCGCCGCCGC
CGCCGCCGCTGCGCCGCCGCTGCAGATGCACTCGCGCGTGGTGGTGCCGT
TCGCGCCGCCTGTGGTGCGCGCGGCGCTCGGGGTGGACGCGCAGCCCGCG
CACTTCCGCTCGCTGCTGGGCGCGCGCTTCTGCGTGCTGGCGGCGCCCGC
GTCCGCCGGGTGCTGCGCCGTGTGCGTGCGCGCGCCGCCGCACGTGGCGC
CGTTTGTGCGCGCCGCGCTGCTGCGCCGCCTGCTACGCGCCGCGCCTCCG
TCGGCGTCGTCGCCGCCGCCGCCGCCGCGCGGCGTGAGGGAGGCGCAGGT
GGCCGCAAGGCTGCGGCTCGCGCGCTGCGAGCCCGCGCTCGCGGCCGCGG
AGCAGGCGCTTGTCGACGCTGTTCGCGCATTCGATAGGCTGGAGAGCGCC
GCGCATGGCGTCGGCGACGGCGTGCACGAGTGGAAGCGCGCTCTGGCTGC
TGCTTCGCATGCGTACCGCGCGTGGAGGAGGGAGGGCGAGGCTGTGTTGG
CGCCCATGGCTGCGCGCGATTGA