Ggra3931.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra3931.t1
Unique NameGgra3931.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length349
Homology
BLAST of Ggra3931.t1 vs. uniprot
Match: A0A2V3IQR8 (BHLH domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQR8_9FLOR)

HSP 1 Score: 380 bits (975), Expect = 1.100e-127
Identity = 186/258 (72.09%), Postives = 216/258 (83.72%), Query Frame = 0
Query:   91 PENQSVTSGHASPTQQRRNHHNTHTRRCRARLNGRFDTLNNMLPRSPTVEVKHKVHILDHAISALQHMHQENANLELYLAMRSRPRVVAWVDSFIPTATSIQTALNPLIDLISHTGAWPYAEVWQSDPPNMSLVHNRLRGTPMQYPALNTLARFSAAQQQLPIASDFAGRSFETRAPFWTSTPSQMCQVVNRAQLMAAARLHSAFSVPIPVAGEIPFVVSFYDVRQRDRDAAQLHSAAFAAACVGNAWAAKQAESLAS 348
            PENQS+TSGHASPTQQRRNHHNTHTRRCRARLNGRFDTLNN+LPRSPTVEVKHKVHILDHAI+ALQ MHQ+NANL+L LA+RSRPR+V WVDSF+PTA+SIQ AL+P I L+ HT AWPYAEVW + PP+++L+H   R T M +PALN LA  SAAQ QL  A DF G+ FETR P W+ +P Q CQV  RAQL+AAAR+  AF+VPIPVAG++  VV+F+DVRQR+RD  Q+  AAFAA CVGNAWAAKQA +LAS
Sbjct:  131 PENQSITSGHASPTQQRRNHHNTHTRRCRARLNGRFDTLNNILPRSPTVEVKHKVHILDHAITALQEMHQQNANLQLLLALRSRPRLVKWVDSFVPTASSIQQALDPFISLVCHTAAWPYAEVWHAQPPHINLIHTSPRATTMHFPALNHLAHVSAAQTQLCFADDFVGKCFETRVPRWSCSPVQQCQVAQRAQLLAAARIQCAFAVPIPVAGDVSHVVAFFDVRQRERDTTQVQFAAFAAVCVGNAWAAKQASALAS 388          
BLAST of Ggra3931.t1 vs. uniprot
Match: A0A7S1TET1 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TET1_9RHOD)

HSP 1 Score: 112 bits (279), Expect = 1.160e-23
Identity = 80/251 (31.87%), Postives = 118/251 (47.01%), Query Frame = 0
Query:  111 HNTHTRRCRARLNGRFDTLNNMLPRSPT-VEVKHKVHILDHAISALQHMHQENANLELYLAMRSRPRVVAWVDSFIPTATSIQTALNPLIDLISHTGAWPYAEVW--------------QSDPPNM-----SLVHNRLRGTPMQYPALNTLARFSAAQQQLPIASDFAGRSFETRAPFWTSTPSQMCQVVNRAQLMAAARLHSAFSVPIPVAGEIPFVVSFYDVRQRDRDAAQLHSAAFAAACVGNAWAAK 341
            H +HTRRCR ++N +F TL N LP  PT  E+KHK  ILD++I  L+ +    A LE  LA+ +R  ++ WVD  +  A     A+NP + ++    AW  AE+W              QS+ P       +  H  L   P ++  ++     S   +  P      GR + T  P W    S   QV  RA+L + A L +  S+P  + G +  VV  YD  +R+ D   L  A   A  +GNA+ A+
Sbjct:  267 HKSHTRRCREKVNEKFQTLMNELPPPPTGTEIKHKAQILDYSIRVLKDLASRKAALESELALSNRRNLLGWVDRVVNDAEDFPDAINPFLKMMCSKKAWKCAELWVPVEERVMVSCPLPQSETPTRLKLLRASFHENLEQDPPRHHRIHEFIDESRRFKFTPTCGS-PGRVYSTMRPEWLHDLSDE-QVFPRAELASKAGLVTCLSIPFLINGRVRGVVCLYDDEKRECDMGDLDLAFDIAILIGNAFGAR 515          
BLAST of Ggra3931.t1 vs. uniprot
Match: R7QJ09 (BHLH domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJ09_CHOCR)

HSP 1 Score: 103 bits (257), Expect = 1.190e-21
Identity = 86/269 (31.97%), Postives = 117/269 (43.49%), Query Frame = 0
Query:  111 HNTHTRRCRARLNGRFDTLNNMLPRSPT-VEVKHKVHILDHAISALQHMHQENANLELYLAMRSRPRVVAWVDSFIPTATSIQTALNPLIDLISHTGAWPYAEVWQSDPPNMSLVHNRLRG------------TPMQY-----------------------PALNT-LARF--SAAQQQLPIASDFAGRSFETRAPFWTSTPSQMCQVVNRAQLMAAARLHSAFSVPIPVAGEIPFVVSFYDVRQRDRDAAQLHSAAFAAACVGNAWAA 340
            HN+HTRRCRA++N +F  L ++LP  P    +KHK  ILD+AI   + +H     LE  LA+ SR ++ AWVD  +  + S+Q AL P + LI   G W Y+E W   P    +    +RG            TP                          P L T L RF   +   Q     D  GR   T  P W  + +   +   RA L   A L   F VP+ + G I  V  F+D  QR  DA  +  A   +  +GNA+ A
Sbjct:   44 HNSHTRRCRAKVNLKFQELLSILPTPPPKTGIKHKAQILDYAIRVYRDIHARKTLLEAELALSSRSQLNAWVDGIVLRSISLQDALAPYLSLICTKGGWKYSEAWI--PAQQPIPSQPVRGKVEAVSGESNVLTPTTLLSGPTARLRLGLAVIPSLGNTDDPDLQTKLERFRDKSRAYQCKARVDLPGRVMCTMRPEWLPSLNDQ-EAFQRAHLAHNANLVVCFGVPVFICGHIAAVAVFFDTDQRAYDAKCVDLADNISGLLGNAFGA 309          
BLAST of Ggra3931.t1 vs. uniprot
Match: A0A1X6PIG4 (BHLH domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PIG4_PORUM)

HSP 1 Score: 86.3 bits (212), Expect = 8.000e-15
Identity = 47/125 (37.60%), Postives = 73/125 (58.40%), Query Frame = 0
Query:   95 SVTSGHASPTQQRRNHHNTHTRRCRARLNGRFDTLNNMLPRSP-TVEVKHKVHILDHAISALQHMHQENANLELYLAMRSRPRVVAWVDSFIPTATSIQTALNPLIDLISHTGAWPYAEVWQSDP 218
            SV S  A     R++ HN+HTR+CRA++N +FD L  +LP  P + +VKHK  ILD+ I   + +      LE  LA+ +R  + AWVD+ + ++ ++  AL P + LI+    + YAE+W   P
Sbjct:  327 SVVSTEAGVRGMRKDVHNSHTRKCRAKVNTKFDELLTLLPPHPDSFQVKHKAQILDYTIHMYKRIQARKNQLEAELALSTRANLAAWVDTVVASSRTLPEALRPYLHLIAVQKRFRYAELWLPQP 451          
The following BLAST results are available for this feature:
BLAST of Ggra3931.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IQR81.100e-12772.09BHLH domain-containing protein n=1 Tax=Gracilariop... [more]
A0A7S1TET11.160e-2331.87Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
R7QJ091.190e-2131.97BHLH domain-containing protein n=1 Tax=Chondrus cr... [more]
A0A1X6PIG48.000e-1537.60BHLH domain-containing protein n=1 Tax=Porphyra um... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 107..158
e-value: 1.6E-5
score: 24.8
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 106..158
score: 10.785023
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3D4.10.280.10coord: 98..175
e-value: 1.3E-10
score: 43.1
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 104..173
IPR029016GAF-like domain superfamilyGENE3D3.30.450.40coord: 177..347
e-value: 4.3E-5
score: 25.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..121
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableSUPERFAMILY55781GAF domain-likecoord: 191..342

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:152394..153440 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3931.t1Ggra3931.t1Gracilaria gracilis GNS1m malemRNAtig00000908_pilon 152394..153440 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra3931.t1 ID=Ggra3931.t1|Name=Ggra3931.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=349bp
MSLSLSTPSVKSRSQHTAMSNTRQPSSPHTPPPAFDDDDDDASLAEQNEY
DPTDDESHSDFPNAESSSRPSQSHSHSRPPSRLQAPANAQPENQSVTSGH
ASPTQQRRNHHNTHTRRCRARLNGRFDTLNNMLPRSPTVEVKHKVHILDH
AISALQHMHQENANLELYLAMRSRPRVVAWVDSFIPTATSIQTALNPLID
LISHTGAWPYAEVWQSDPPNMSLVHNRLRGTPMQYPALNTLARFSAAQQQ
LPIASDFAGRSFETRAPFWTSTPSQMCQVVNRAQLMAAARLHSAFSVPIP
VAGEIPFVVSFYDVRQRDRDAAQLHSAAFAAACVGNAWAAKQAESLAS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
IPR036638HLH_DNA-bd_sf
IPR029016GAF-like_dom_sf