Ggra3931.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3931.t1
Unique Name	Ggra3931.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	349

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000908_pilon	contig	tig00000908_pilon:152394..153440 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	317936.Nos7107_3266
PFAMs	GAF,GAF_2,HATPase_c,HisKA,PAS,PAS_3,PAS_4,PAS_9,Response_reg
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K11527
Evalue	0.000738
EggNOG OGs	COG0642@1\|root,COG0745@1\|root,COG2202@1\|root,COG2203@1\|root,COG0745@2\|Bacteria,COG2202@2\|Bacteria,COG2203@2\|Bacteria,COG2205@2\|Bacteria,1G09B@1117\|Cyanobacteria,1HJ8D@1161\|Nostocales
EC	2.7.13.3
Description	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
COG category	T
BRITE	ko00000,ko01000,ko01001,ko02022

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3931	Ggra3931	Gracilaria gracilis GNS1m male	gene	tig00000908_pilon 152394..153440 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3931.t1.start1	Ggra3931.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000908_pilon 152394..152396 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3931.t1.CDS1	Ggra3931.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000908_pilon 152394..153440 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3931.t1.exon1	Ggra3931.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000908_pilon 152394..153440 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3931.t1.stop1	Ggra3931.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000908_pilon 153438..153440 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3931.t1	Ggra3931.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000908_pilon 152394..153440 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000908_pilon:152394..153440+
coding sequence from alignment at tig00000908_pilon:152394..153440+

mRNA sequence

>Ggra3931.t1 ID=Ggra3931.t1|Name=Ggra3931.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=349bp
MSLSLSTPSVKSRSQHTAMSNTRQPSSPHTPPPAFDDDDDDASLAEQNEY
DPTDDESHSDFPNAESSSRPSQSHSHSRPPSRLQAPANAQPENQSVTSGH
ASPTQQRRNHHNTHTRRCRARLNGRFDTLNNMLPRSPTVEVKHKVHILDH
AISALQHMHQENANLELYLAMRSRPRVVAWVDSFIPTATSIQTALNPLID
LISHTGAWPYAEVWQSDPPNMSLVHNRLRGTPMQYPALNTLARFSAAQQQ
LPIASDFAGRSFETRAPFWTSTPSQMCQVVNRAQLMAAARLHSAFSVPIP
VAGEIPFVVSFYDVRQRDRDAAQLHSAAFAAACVGNAWAAKQAESLAS*

spliced messenger RNA

>Ggra3931.t1 ID=Ggra3931.t1|Name=Ggra3931.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1047bp|location=Sequence derived from alignment at tig00000908_pilon:152394..153440+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCTTTCGTTATCCACTCCTTCCGTCAAGTCGCGCTCGCAACATAC
CGCCATGTCAAACACTCGACAGCCTTCATCTCCGCACACCCCACCTCCTG
CCTTTGACGACGACGACGATGATGCCTCACTGGCCGAGCAGAATGAGTAT
GATCCCACCGATGACGAGTCTCATTCCGACTTTCCAAATGCCGAATCTTC
CTCACGACCTTCGCAATCCCATTCTCATTCCCGACCTCCCTCTCGGCTAC
AAGCCCCTGCCAACGCTCAACCGGAGAATCAATCCGTCACCTCCGGCCAT
GCTTCGCCCACCCAACAACGTCGCAACCATCACAACACCCATACCAGACG
TTGTCGCGCGAGGCTCAATGGTCGCTTTGATACCCTCAACAATATGTTAC
CTCGCTCACCCACCGTAGAGGTCAAACACAAGGTGCATATTCTAGACCAT
GCAATATCTGCCTTACAACACATGCATCAAGAGAATGCAAATCTCGAACT
CTACCTGGCCATGCGTTCAAGACCACGAGTTGTTGCATGGGTCGATTCTT
TCATCCCCACAGCTACTTCGATCCAGACCGCTCTCAACCCTCTCATCGAT
CTTATCAGTCATACTGGCGCATGGCCGTATGCTGAAGTCTGGCAATCAGA
TCCTCCAAACATGTCTCTAGTGCATAACAGGTTACGAGGAACCCCTATGC
AGTATCCCGCCCTTAACACGCTTGCGCGTTTTTCGGCTGCGCAGCAACAA
CTCCCGATCGCATCCGACTTTGCTGGGCGTTCGTTTGAAACGCGTGCTCC
GTTTTGGACCTCCACTCCTTCACAGATGTGCCAGGTTGTGAACCGTGCGC
AACTTATGGCGGCCGCAAGATTACATTCGGCTTTCTCTGTACCTATACCG
GTTGCTGGTGAGATACCCTTCGTTGTGTCGTTTTATGATGTGAGACAACG
TGATCGCGATGCTGCACAACTTCACTCTGCTGCCTTTGCTGCTGCGTGTG
TGGGAAATGCATGGGCTGCTAAGCAGGCTGAGTCTCTTGCTTCGTGA

protein sequence of Ggra3931.t1

>Ggra3931.t1 ID=Ggra3931.t1|Name=Ggra3931.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=349bp
MSLSLSTPSVKSRSQHTAMSNTRQPSSPHTPPPAFDDDDDDASLAEQNEY
DPTDDESHSDFPNAESSSRPSQSHSHSRPPSRLQAPANAQPENQSVTSGH
ASPTQQRRNHHNTHTRRCRARLNGRFDTLNNMLPRSPTVEVKHKVHILDH
AISALQHMHQENANLELYLAMRSRPRVVAWVDSFIPTATSIQTALNPLID
LISHTGAWPYAEVWQSDPPNMSLVHNRLRGTPMQYPALNTLARFSAAQQQ
LPIASDFAGRSFETRAPFWTSTPSQMCQVVNRAQLMAAARLHSAFSVPIP
VAGEIPFVVSFYDVRQRDRDAAQLHSAAFAAACVGNAWAAKQAESLAS*

mRNA from alignment at tig00000908_pilon:152394..153440+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3931.t1 ID=Ggra3931.t1|Name=Ggra3931.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1047bp|location=Sequence derived from alignment at tig00000908_pilon:152394..153440+ (Gracilaria gracilis GNS1m male)
ATGTCGCTTTCGTTATCCACTCCTTCCGTCAAGTCGCGCTCGCAACATAC
CGCCATGTCAAACACTCGACAGCCTTCATCTCCGCACACCCCACCTCCTG
CCTTTGACGACGACGACGATGATGCCTCACTGGCCGAGCAGAATGAGTAT
GATCCCACCGATGACGAGTCTCATTCCGACTTTCCAAATGCCGAATCTTC
CTCACGACCTTCGCAATCCCATTCTCATTCCCGACCTCCCTCTCGGCTAC
AAGCCCCTGCCAACGCTCAACCGGAGAATCAATCCGTCACCTCCGGCCAT
GCTTCGCCCACCCAACAACGTCGCAACCATCACAACACCCATACCAGACG
TTGTCGCGCGAGGCTCAATGGTCGCTTTGATACCCTCAACAATATGTTAC
CTCGCTCACCCACCGTAGAGGTCAAACACAAGGTGCATATTCTAGACCAT
GCAATATCTGCCTTACAACACATGCATCAAGAGAATGCAAATCTCGAACT
CTACCTGGCCATGCGTTCAAGACCACGAGTTGTTGCATGGGTCGATTCTT
TCATCCCCACAGCTACTTCGATCCAGACCGCTCTCAACCCTCTCATCGAT
CTTATCAGTCATACTGGCGCATGGCCGTATGCTGAAGTCTGGCAATCAGA
TCCTCCAAACATGTCTCTAGTGCATAACAGGTTACGAGGAACCCCTATGC
AGTATCCCGCCCTTAACACGCTTGCGCGTTTTTCGGCTGCGCAGCAACAA
CTCCCGATCGCATCCGACTTTGCTGGGCGTTCGTTTGAAACGCGTGCTCC
GTTTTGGACCTCCACTCCTTCACAGATGTGCCAGGTTGTGAACCGTGCGC
AACTTATGGCGGCCGCAAGATTACATTCGGCTTTCTCTGTACCTATACCG
GTTGCTGGTGAGATACCCTTCGTTGTGTCGTTTTATGATGTGAGACAACG
TGATCGCGATGCTGCACAACTTCACTCTGCTGCCTTTGCTGCTGCGTGTG
TGGGAAATGCATGGGCTGCTAAGCAGGCTGAGTCTCTTGCTTCGTGA

Coding sequence (CDS) from alignment at tig00000908_pilon:152394..153440+

>Ggra3931.t1 ID=Ggra3931.t1|Name=Ggra3931.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1047bp|location=Sequence derived from alignment at tig00000908_pilon:152394..153440+ (Gracilaria gracilis GNS1m male)
ATGTCGCTTTCGTTATCCACTCCTTCCGTCAAGTCGCGCTCGCAACATAC
CGCCATGTCAAACACTCGACAGCCTTCATCTCCGCACACCCCACCTCCTG
CCTTTGACGACGACGACGATGATGCCTCACTGGCCGAGCAGAATGAGTAT
GATCCCACCGATGACGAGTCTCATTCCGACTTTCCAAATGCCGAATCTTC
CTCACGACCTTCGCAATCCCATTCTCATTCCCGACCTCCCTCTCGGCTAC
AAGCCCCTGCCAACGCTCAACCGGAGAATCAATCCGTCACCTCCGGCCAT
GCTTCGCCCACCCAACAACGTCGCAACCATCACAACACCCATACCAGACG
TTGTCGCGCGAGGCTCAATGGTCGCTTTGATACCCTCAACAATATGTTAC
CTCGCTCACCCACCGTAGAGGTCAAACACAAGGTGCATATTCTAGACCAT
GCAATATCTGCCTTACAACACATGCATCAAGAGAATGCAAATCTCGAACT
CTACCTGGCCATGCGTTCAAGACCACGAGTTGTTGCATGGGTCGATTCTT
TCATCCCCACAGCTACTTCGATCCAGACCGCTCTCAACCCTCTCATCGAT
CTTATCAGTCATACTGGCGCATGGCCGTATGCTGAAGTCTGGCAATCAGA
TCCTCCAAACATGTCTCTAGTGCATAACAGGTTACGAGGAACCCCTATGC
AGTATCCCGCCCTTAACACGCTTGCGCGTTTTTCGGCTGCGCAGCAACAA
CTCCCGATCGCATCCGACTTTGCTGGGCGTTCGTTTGAAACGCGTGCTCC
GTTTTGGACCTCCACTCCTTCACAGATGTGCCAGGTTGTGAACCGTGCGC
AACTTATGGCGGCCGCAAGATTACATTCGGCTTTCTCTGTACCTATACCG
GTTGCTGGTGAGATACCCTTCGTTGTGTCGTTTTATGATGTGAGACAACG
TGATCGCGATGCTGCACAACTTCACTCTGCTGCCTTTGCTGCTGCGTGTG
TGGGAAATGCATGGGCTGCTAAGCAGGCTGAGTCTCTTGCTTCGTGA