Ggra3848.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra3848.t1
Unique NameGgra3848.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length165
Homology
BLAST of Ggra3848.t1 vs. uniprot
Match: A0A2V3IN31 (Putative ribosome biogenesis protein RLP24 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IN31_9FLOR)

HSP 1 Score: 292 bits (748), Expect = 1.340e-99
Identity = 147/162 (90.74%), Postives = 159/162 (98.15%), Query Frame = 0
Query:    1 MRLEKCYVCSSTVYPGHGSMFVRNDAKIFRFCRSKCRRNFNLKRNPRKLRWTKAFRKAAGKELAIDTTFSFERRRNRAVKYDRELVAKTLQAMPVIQKVSSDRQHDFYKTRMVEREKETRKDALRELATGLDVIRPLVVREKLREREELESAMEVVEEGAVE 162
            MRLEKCYVCSST+YPGHGSMFVRNDAKIFRFCRSKCRRNFNLKRNPRKLRWTKAFRKAAGKELAIDT+F+FERRRNRAVKYDR+LVAKTLQA+PVIQKV S+R+HDFY+TRMVEREKETRKDALRELATGLDVI+PL+VREKLREREE ESAMEV+EEG V+
Sbjct:    1 MRLEKCYVCSSTIYPGHGSMFVRNDAKIFRFCRSKCRRNFNLKRNPRKLRWTKAFRKAAGKELAIDTSFAFERRRNRAVKYDRDLVAKTLQAIPVIQKVRSEREHDFYRTRMVEREKETRKDALRELATGLDVIKPLIVREKLREREEKESAMEVIEEGLVD 162          
BLAST of Ggra3848.t1 vs. uniprot
Match: R7QIR4 (Ribosomal protein L24 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QIR4_CHOCR)

HSP 1 Score: 236 bits (603), Expect = 1.610e-77
Identity = 112/149 (75.17%), Postives = 135/149 (90.60%), Query Frame = 0
Query:    1 MRLEKCYVCSSTVYPGHGSMFVRNDAKIFRFCRSKCRRNFNLKRNPRKLRWTKAFRKAAGKELAIDTTFSFERRRNRAVKYDRELVAKTLQAMPVIQKVSSDRQHDFYKTRMVEREKETRKDALRELATGLDVIRPLVVREKLREREEL 149
            MRLEKCYVCSST+YPGHG+MFVRND+K+FRFCRSKCR+NFN+KRNPRKLRWTKAFR AAGKEL +D++F+FERRRNR  KYDRE+VA TL+A+P I K+ S RQ DFYKTRMV R KETRKDALRELATG D+++PL+VR+K+ ER+++
Sbjct:    1 MRLEKCYVCSSTIYPGHGAMFVRNDSKVFRFCRSKCRKNFNMKRNPRKLRWTKAFRAAAGKELVVDSSFAFERRRNRVEKYDREVVATTLRALPTIDKIKSARQKDFYKTRMVTRVKETRKDALRELATGADIVQPLIVRQKIAERKDV 149          
BLAST of Ggra3848.t1 vs. uniprot
Match: M2XR36 (60S ribosomal protein L24e n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XR36_GALSU)

HSP 1 Score: 188 bits (477), Expect = 2.730e-58
Identity = 93/159 (58.49%), Postives = 125/159 (78.62%), Query Frame = 0
Query:    1 MRLEKCYVCSSTVYPGHGSMFVRNDAKIFRFCRSKCRRNFNLKRNPRKLRWTKAFRKAAGKELAIDTTFSFERRRNRAVKYDRELVAKTLQAMPVIQKVSSDRQHDFYKTRMVEREKETRKDALRELATGLDVIRP--LVVREKLREREELESAMEVVE 157
            MRLEKCY+CSSTVYPGHG  FVRNDAK+FRFCRSKCR+ F++KRNPR LRWTKA+RK+ GKE+AID+TF FER+R R  +YDRELV KT+QA+  +  V   R+ DFYK++M + +K+ ++ A+REL  G+++I P  L V+E +R RE ++  + +VE
Sbjct:    1 MRLEKCYICSSTVYPGHGIEFVRNDAKVFRFCRSKCRKTFHMKRNPRYLRWTKAYRKSHGKEMAIDSTFEFERKRQRIQRYDRELVGKTIQAIQKVDAVRVKREKDFYKSKMKQAKKQEQRTAVRELEKGINLIEPDILRVKESVRAREPVQQGVALVE 159          
BLAST of Ggra3848.t1 vs. uniprot
Match: A0A1X6NSE8 (TRASH domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NSE8_PORUM)

HSP 1 Score: 185 bits (470), Expect = 3.060e-57
Identity = 93/160 (58.13%), Postives = 120/160 (75.00%), Query Frame = 0
Query:    1 MRLEKCYVCSSTVYPGHGSMFVRNDAKIFRFCRSKCRRNFNLKRNPRKLRWTKAFRKAAGKELAIDTTFSFERRRNRAVKYDRELVAKTLQAMPVIQKVSSDRQHDFYKTRMVEREKETRKDALRELATGLDVIRPLVVREKLREREELESAMEVVEEGA 160
            MRLEKCYVCSSTVYPGHG+MFVRNDAK FRFCRSKCR+ F++K+NPR LRWTKAFR AAGKEL +D TF FERRRN   KYDRE++A +L+A+  + +V   RQ DF++ RM  +E   RKD LR+L   + ++ P++VRE+   +  + +A+ V E  A
Sbjct:    1 MRLEKCYVCSSTVYPGHGTMFVRNDAKTFRFCRSKCRKLFSMKKNPRHLRWTKAFRAAAGKELVVDATFEFERRRNVVAKYDREVMASSLRALTKVSEVKVLRQADFHRRRMRAKEVTDRKDGLRDLTQSIQLVEPVLVRERADAKARVAAAVRVEEPQA 160          
BLAST of Ggra3848.t1 vs. uniprot
Match: A0A5J4YS33 (Putative ribosome biogenesis protein RLP24 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YS33_PORPP)

HSP 1 Score: 178 bits (452), Expect = 1.370e-54
Identity = 88/147 (59.86%), Postives = 113/147 (76.87%), Query Frame = 0
Query:    1 MRLEKCYVCSSTVYPGHGSMFVRNDAKIFRFCRSKCRRNFNLKRNPRKLRWTKAFRKAAGKELAIDTTFSFERRRNRAVKYDRELVAKTLQAMPVIQKVSSDRQHDFYKTRMVEREKETRKDALRELATGLDVIRPLVVREKLRERE 147
            MRLEKCYVCSSTVYPGHGSM VRNDA   RFCRSKCR+NF ++RNPR ++WTKA RKAAGKE+ +D+TF  +RRRNR +KYDREL++ TL AM  I+K+   R+  F+K RM  + K  ++ AL++LA  L++ +P VVRE+   RE
Sbjct:    1 MRLEKCYVCSSTVYPGHGSMLVRNDATCVRFCRSKCRKNFTMRRNPRYMKWTKAARKAAGKEMVMDSTFELQRRRNRVMKYDRELMSTTLSAMKEIEKIRGRREKSFFKDRMKVKAKVDKRMALKDLAQDLEIAQPAVVRERKELRE 147          
BLAST of Ggra3848.t1 vs. uniprot
Match: A0A507C955 (TRASH domain-containing protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507C955_9FUNG)

HSP 1 Score: 176 bits (446), Expect = 1.310e-53
Identity = 87/148 (58.78%), Postives = 115/148 (77.70%), Query Frame = 0
Query:    1 MRLEKCYVCSSTVYPGHGSMFVRNDAKIFRFCRSKCRRNFNLKRNPRKLRWTKAFRKAAGKELAIDTTFSFERRRNRAVKYDRELVAKTLQAMPVIQKVSSDRQHDFYKTRMVE--REKETRKDALRELATGLDVIRPLVVREKLRER 146
            MRLEKCY CSSTVYPGHG  FVRNDAKIFRFCRSKC +NF +KRNPRK+ WTKAFR+A GKE+ ID T  FE+RRN  VKYDRELVA T++AM  + ++ + R+  FYK RMV+  +++  R D L++++T +D++    VRE+++E+
Sbjct:    1 MRLEKCYFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVAWTKAFRRAHGKEMTIDPTLEFEKRRNVPVKYDRELVASTVKAMKRVAEIKARRERVFYKNRMVKAGKKEHERSDMLKDISTHIDLVVAPGVRERVKEK 148          
BLAST of Ggra3848.t1 vs. uniprot
Match: A0A4P9WBC5 (Ribosomal protein L24e-domain-containing protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WBC5_9FUNG)

HSP 1 Score: 176 bits (445), Expect = 1.590e-53
Identity = 84/145 (57.93%), Postives = 112/145 (77.24%), Query Frame = 0
Query:    1 MRLEKCYVCSSTVYPGHGSMFVRNDAKIFRFCRSKCRRNFNLKRNPRKLRWTKAFRKAAGKELAIDTTFSFERRRNRAVKYDRELVAKTLQAMPVIQKVSSDRQHDFYKTRMVEREKETRKDALRELATGLDVIRPLVVREKLRE 145
            MRLEKCY CSST YPGHG+MFVRND+K FRFCRSKC +NF +KRNPRK+RWTKAFRKAAGKE+ ID+T  FE+RRN  V+YDREL+A TL+AM  +Q++ + R+  FYK RM+ ++   R   L+ +   ++++    VR++L+E
Sbjct:    1 MRLEKCYFCSSTCYPGHGTMFVRNDSKTFRFCRSKCHKNFKMKRNPRKVRWTKAFRKAAGKEMTIDSTLEFEKRRNVPVRYDRELMATTLKAMKRVQEIKARRERVFYKKRMIGKKDRERAQNLKLVQRNIELVEAPAVRQRLQE 145          
BLAST of Ggra3848.t1 vs. uniprot
Match: A0A2T9ZC07 (TRASH domain-containing protein n=1 Tax=Smittium megazygosporum TaxID=133381 RepID=A0A2T9ZC07_9FUNG)

HSP 1 Score: 176 bits (445), Expect = 1.590e-53
Identity = 83/145 (57.24%), Postives = 113/145 (77.93%), Query Frame = 0
Query:    1 MRLEKCYVCSSTVYPGHGSMFVRNDAKIFRFCRSKCRRNFNLKRNPRKLRWTKAFRKAAGKELAIDTTFSFERRRNRAVKYDRELVAKTLQAMPVIQKVSSDRQHDFYKTRMVEREKETRKDALRELATGLDVIRPLVVREKLRE 145
            MRLEKCY CSSTVYPGHG+MFVRND+K+FRFCRSKC +NF +KRNPRKL WTKAFRKAAGKE+A+D+TF FE+RRN  V+Y+RELV+KT+Q+M  I ++ + R+  F++ RM  + ++ R+  ++E+   L ++     R K+ E
Sbjct:    1 MRLEKCYFCSSTVYPGHGTMFVRNDSKMFRFCRSKCSKNFKMKRNPRKLGWTKAFRKAAGKEMAVDSTFEFEKRRNVPVRYNRELVSKTVQSMKRISEIKARRERAFFQQRMASKPEQEREQNIKEIEKNLHILSTPATRAKVEE 145          
BLAST of Ggra3848.t1 vs. uniprot
Match: A0A024UVG7 (TRASH domain-containing protein n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A024UVG7_9STRA)

HSP 1 Score: 174 bits (442), Expect = 6.020e-53
Identity = 84/140 (60.00%), Postives = 107/140 (76.43%), Query Frame = 0
Query:    1 MRLEKCYVCSSTVYPGHGSMFVRNDAKIFRFCRSKCRRNFNLKRNPRKLRWTKAFRKAAGKELAIDTTFSFERRRNRAVKYDRELVAKTLQAMPVIQKVSSDRQHDFYKTRMVEREKETRKDALRELATGLDVIRPLVVR 140
            MR+  CY CSS VYPGHG  FVRND+K+FRFCRSKC RNFN KRNPRK++WTKAFRKAAGKE+A+D+TF FE+ RNRAVKYDR+LV  TL A+  + ++   R+  FYK RM + + + +   L+EL T + +I+P VVR
Sbjct:    1 MRIHTCYFCSSPVYPGHGMTFVRNDSKVFRFCRSKCHRNFNRKRNPRKVKWTKAFRKAAGKEMALDSTFEFEKVRNRAVKYDRDLVGATLHAIARVNQIKEKREAAFYKNRMKDSKAKQKAQDLKELETNISLIKPDVVR 140          
BLAST of Ggra3848.t1 vs. uniprot
Match: A0A1Y1ZCL3 (TRASH domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1ZCL3_9FUNG)

HSP 1 Score: 174 bits (441), Expect = 6.230e-53
Identity = 83/155 (53.55%), Postives = 118/155 (76.13%), Query Frame = 0
Query:    1 MRLEKCYVCSSTVYPGHGSMFVRNDAKIFRFCRSKCRRNFNLKRNPRKLRWTKAFRKAAGKELAIDTTFSFERRRNRAVKYDRELVAKTLQAMPVIQKVSSDRQHDFYKTRMVEREKETRKDALRELATGLDVIRPLVVREKLREREELESAMEV 155
            MRLEKCY CSST YPGHG MFVRND+K FRFCRSKC +NF +KRNPRK+RWTKAFRK+AGKE+ ID+TF FE+RRN  VKYDR+L+A T++AM  +Q++ + R+  FYK+RM   ++  + + ++E+   + ++    ++ KL+  + LES+ ++
Sbjct:    1 MRLEKCYFCSSTCYPGHGCMFVRNDSKTFRFCRSKCHKNFKMKRNPRKVRWTKAFRKSAGKEMTIDSTFEFEKRRNVPVKYDRDLMATTIKAMKRVQEIRARRERSFYKSRMSGNKEREKAENIKEIQRNIHLVSSPALKNKLQVDKILESSKQM 155          
The following BLAST results are available for this feature:
BLAST of Ggra3848.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IN311.340e-9990.74Putative ribosome biogenesis protein RLP24 n=1 Tax... [more]
R7QIR41.610e-7775.17Ribosomal protein L24 n=1 Tax=Chondrus crispus Tax... [more]
M2XR362.730e-5858.4960S ribosomal protein L24e n=1 Tax=Galdieria sulph... [more]
A0A1X6NSE83.060e-5758.13TRASH domain-containing protein n=1 Tax=Porphyra u... [more]
A0A5J4YS331.370e-5459.86Putative ribosome biogenesis protein RLP24 n=1 Tax... [more]
A0A507C9551.310e-5358.78TRASH domain-containing protein n=1 Tax=Synchytriu... [more]
A0A4P9WBC51.590e-5357.93Ribosomal protein L24e-domain-containing protein n... [more]
A0A2T9ZC071.590e-5357.24TRASH domain-containing protein n=1 Tax=Smittium m... [more]
A0A024UVG76.020e-5360.00TRASH domain-containing protein n=6 Tax=Aphanomyce... [more]
A0A1Y1ZCL36.230e-5353.55TRASH domain-containing protein n=1 Tax=Basidiobol... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 139..159
NoneNo IPR availablePANTHERPTHR10792:SF8RIBOSOME BIOGENESIS PROTEIN RLP24-RELATEDcoord: 1..126
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 4..56
IPR011017TRASH domainSMARTSM007464TRASHcoord: 6..44
e-value: 1.6E-10
score: 51.0
IPR038630Ribosomal protein L24e/L24 superfamilyGENE3D2.30.170.20Ribosomal protein L24ecoord: 1..68
e-value: 1.7E-31
score: 110.0
IPR000988Ribosomal protein L24e-relatedPFAMPF01246Ribosomal_L24ecoord: 1..63
e-value: 4.1E-30
score: 103.8
IPR000988Ribosomal protein L24e-relatedPANTHERPTHR1079260S RIBOSOMAL PROTEIN L24coord: 1..126
IPR000988Ribosomal protein L24e-relatedCDDcd00472Ribosomal_L24e_L24coord: 1..54
e-value: 1.58241E-27
score: 95.717

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:2215910..2216404 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3848.t1Ggra3848.t1Gracilaria gracilis GNS1m malemRNAtig00000850_pilon 2215910..2216404 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra3848.t1 ID=Ggra3848.t1|Name=Ggra3848.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=165bp
MRLEKCYVCSSTVYPGHGSMFVRNDAKIFRFCRSKCRRNFNLKRNPRKLR
WTKAFRKAAGKELAIDTTFSFERRRNRAVKYDRELVAKTLQAMPVIQKVS
SDRQHDFYKTRMVEREKETRKDALRELATGLDVIRPLVVREKLREREELE
SAMEVVEEGAVETK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011017TRASH_dom
IPR038630L24e/L24_sf
IPR000988Ribosomal_L24e-rel