Ggra3848.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3848.t1
Unique NameGgra3848.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length165
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:2215910..2216404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709237.1
Preferred nameRSL24D1
PFAMsRibosomal_L24e
Max annot lvl2759|Eukaryota
KEGG koko:K02896
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0000027,GO:0001671,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008047,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030234,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032781,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043462,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050790,GO:0051336,GO:0051345,GO:0060589,GO:0060590,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0098772,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902626,GO:1990904
Evalue3.88e-58
EggNOG OGsCOG2075@1|root,KOG1723@2759|Eukaryota
Descriptionassembly of large subunit precursor of preribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3848Ggra3848Gracilaria gracilis GNS1m malegenetig00000850_pilon 2215910..2216404 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3848.t1.start1Ggra3848.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 2215910..2215912 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3848.t1.CDS1Ggra3848.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2215910..2216404 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3848.t1.exon1Ggra3848.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 2215910..2216404 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3848.t1.stop1Ggra3848.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 2216402..2216404 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3848.t1Ggra3848.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 2215910..2216404 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3848.t1 ID=Ggra3848.t1|Name=Ggra3848.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=165bp
MRLEKCYVCSSTVYPGHGSMFVRNDAKIFRFCRSKCRRNFNLKRNPRKLR
WTKAFRKAAGKELAIDTTFSFERRRNRAVKYDRELVAKTLQAMPVIQKVS
SDRQHDFYKTRMVEREKETRKDALRELATGLDVIRPLVVREKLREREELE
SAMEVVEEGAVETK*
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spliced messenger RNA

>Ggra3848.t1 ID=Ggra3848.t1|Name=Ggra3848.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=495bp|location=Sequence derived from alignment at tig00000850_pilon:2215910..2216404+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGCTTGAGAAGTGTTATGTGTGCTCCTCAACAGTGTATCCTGGGCA
TGGGAGCATGTTTGTGCGGAACGATGCAAAAATATTTAGATTCTGTCGAT
CCAAATGTCGTCGCAACTTCAATCTAAAGAGAAACCCTCGGAAGTTGCGC
TGGACAAAAGCTTTCCGGAAAGCGGCTGGAAAGGAGCTTGCTATTGATAC
TACTTTCTCTTTTGAAAGACGTCGAAATAGAGCTGTTAAGTATGATCGTG
AGCTTGTCGCAAAAACTCTGCAAGCTATGCCTGTAATCCAAAAAGTTAGC
AGCGATAGACAGCACGACTTCTACAAAACACGAATGGTTGAACGAGAGAA
AGAAACGAGAAAGGATGCCCTGCGTGAGCTGGCTACCGGCTTGGACGTCA
TTCGTCCACTTGTCGTCCGGGAAAAATTGCGAGAACGAGAAGAGTTGGAG
AGCGCAATGGAAGTTGTCGAAGAAGGCGCAGTGGAAACGAAGTAG
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protein sequence of Ggra3848.t1

>Ggra3848.t1 ID=Ggra3848.t1|Name=Ggra3848.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=165bp
MRLEKCYVCSSTVYPGHGSMFVRNDAKIFRFCRSKCRRNFNLKRNPRKLR
WTKAFRKAAGKELAIDTTFSFERRRNRAVKYDRELVAKTLQAMPVIQKVS
SDRQHDFYKTRMVEREKETRKDALRELATGLDVIRPLVVREKLREREELE
SAMEVVEEGAVETK*
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mRNA from alignment at tig00000850_pilon:2215910..2216404+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3848.t1 ID=Ggra3848.t1|Name=Ggra3848.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=495bp|location=Sequence derived from alignment at tig00000850_pilon:2215910..2216404+ (Gracilaria gracilis GNS1m male)
ATGAGGCTTGAGAAGTGTTATGTGTGCTCCTCAACAGTGTATCCTGGGCA
TGGGAGCATGTTTGTGCGGAACGATGCAAAAATATTTAGATTCTGTCGAT
CCAAATGTCGTCGCAACTTCAATCTAAAGAGAAACCCTCGGAAGTTGCGC
TGGACAAAAGCTTTCCGGAAAGCGGCTGGAAAGGAGCTTGCTATTGATAC
TACTTTCTCTTTTGAAAGACGTCGAAATAGAGCTGTTAAGTATGATCGTG
AGCTTGTCGCAAAAACTCTGCAAGCTATGCCTGTAATCCAAAAAGTTAGC
AGCGATAGACAGCACGACTTCTACAAAACACGAATGGTTGAACGAGAGAA
AGAAACGAGAAAGGATGCCCTGCGTGAGCTGGCTACCGGCTTGGACGTCA
TTCGTCCACTTGTCGTCCGGGAAAAATTGCGAGAACGAGAAGAGTTGGAG
AGCGCAATGGAAGTTGTCGAAGAAGGCGCAGTGGAAACGAAGTAG
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Coding sequence (CDS) from alignment at tig00000850_pilon:2215910..2216404+

>Ggra3848.t1 ID=Ggra3848.t1|Name=Ggra3848.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=495bp|location=Sequence derived from alignment at tig00000850_pilon:2215910..2216404+ (Gracilaria gracilis GNS1m male)
ATGAGGCTTGAGAAGTGTTATGTGTGCTCCTCAACAGTGTATCCTGGGCA
TGGGAGCATGTTTGTGCGGAACGATGCAAAAATATTTAGATTCTGTCGAT
CCAAATGTCGTCGCAACTTCAATCTAAAGAGAAACCCTCGGAAGTTGCGC
TGGACAAAAGCTTTCCGGAAAGCGGCTGGAAAGGAGCTTGCTATTGATAC
TACTTTCTCTTTTGAAAGACGTCGAAATAGAGCTGTTAAGTATGATCGTG
AGCTTGTCGCAAAAACTCTGCAAGCTATGCCTGTAATCCAAAAAGTTAGC
AGCGATAGACAGCACGACTTCTACAAAACACGAATGGTTGAACGAGAGAA
AGAAACGAGAAAGGATGCCCTGCGTGAGCTGGCTACCGGCTTGGACGTCA
TTCGTCCACTTGTCGTCCGGGAAAAATTGCGAGAACGAGAAGAGTTGGAG
AGCGCAATGGAAGTTGTCGAAGAAGGCGCAGTGGAAACGAAGTAG
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