Ggra3836.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra3836.t1
Unique NameGgra3836.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length92
Homology
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BLAST of Ggra3836.t1 vs. uniprot
Match: A0A2V3IQQ2 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQQ2_9FLOR)

HSP 1 Score: 114 bits (284), Expect = 4.860e-31
Identity = 47/87 (54.02%), Postives = 73/87 (83.91%), Query Frame = 0 
Query:    4 RRGGVTKKKVRVLLQVPENVAKLLNESDGQVALKLESIEPPILTVGDKRLVGRFEDVIGTDLIFDRSENENAGFIGGCTKRLICTEE 90
            R+ GVTKK+ RVLLQVPE++AK+L+E   ++ +K +S++PP+L +  +R+ GRFEDV+GTDL+FD+++ ENAG+I GCT+RL+C ++
Sbjct:   16 RKVGVTKKRKRVLLQVPEHIAKVLSEPGAELRVKFQSLDPPVLIIDGQRIEGRFEDVVGTDLVFDQTKTENAGYIAGCTRRLLCKQD 102
The following BLAST results are available for this feature:
BLAST of Ggra3836.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IQQ24.860e-3154.02Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.60.40.4370coord: 8..90
e-value: 4.6E-6
score: 28.4
IPR019481Transcription factor TFIIIC, triple barrel domainPFAMPF10419TFIIIC_sub6coord: 36..85
e-value: 8.5E-6
score: 25.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:2189423..2189773 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3836.t1Ggra3836.t1Gracilaria gracilis GNS1m malemRNAtig00000850_pilon 2189423..2189773 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra3836.t1 ID=Ggra3836.t1|Name=Ggra3836.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=92bp
MVVRRGGVTKKKVRVLLQVPENVAKLLNESDGQVALKLESIEPPILTVGD
KRLVGRFEDVIGTDLIFDRSENENAGFIGGCTKRLICTEEK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019481TFIIIC_triple_barrel