Ggra3836.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3836.t1
Unique NameGgra3836.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length92
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:2189423..2189773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog400682.PAC_15719470
Preferred nameGTF3C6
PFAMsTFIIIC_sub6
Max annot lvl33208|Metazoa
KEGG koko:K15203
GOsGO:0000127,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0006139,GO:0006351,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009303,GO:0009304,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016604,GO:0018130,GO:0019438,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042791,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0090576,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901576
Evalue0.00017
EggNOG OGs2AAV2@1|root,2RYMW@2759|Eukaryota,39XG9@33154|Opisthokonta,3BNAH@33208|Metazoa
Descriptiontranscription by RNA polymerase III
COG categoryS
BRITEko00000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3836Ggra3836Gracilaria gracilis GNS1m malegenetig00000850_pilon 2189423..2189773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3836.t1Ggra3836.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 2189423..2189773 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3836.t1.start1Ggra3836.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 2189423..2189425 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3836.t1.CDS1Ggra3836.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2189423..2189533 +
Ggra3836.t1.CDS2Ggra3836.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2189609..2189773 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3836.t1.exon1Ggra3836.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 2189423..2189533 +
Ggra3836.t1.exon2Ggra3836.t1.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 2189609..2189773 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3836.t1.intron1Ggra3836.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 2189534..2189608 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3836.t1.stop1Ggra3836.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 2189771..2189773 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3836.t1 ID=Ggra3836.t1|Name=Ggra3836.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=92bp
MVVRRGGVTKKKVRVLLQVPENVAKLLNESDGQVALKLESIEPPILTVGD
KRLVGRFEDVIGTDLIFDRSENENAGFIGGCTKRLICTEEK*
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spliced messenger RNA

>Ggra3836.t1 ID=Ggra3836.t1|Name=Ggra3836.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=276bp|location=Sequence derived from alignment at tig00000850_pilon:2189423..2189773+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGTCAGGCGAGGTGGAGTTACCAAAAAGAAGGTGCGTGTTCTGCT
TCAGGTACCGGAAAATGTCGCAAAGCTTCTCAACGAATCAGACGGACAGG
TCGCTCTTAAGCTTGAGAGTATTGAACCACCCATACTCACCGTTGGCGAC
AAGCGTCTCGTAGGTCGCTTTGAAGATGTCATTGGTACTGACTTGATATT
TGATCGTTCGGAGAATGAGAATGCTGGTTTTATTGGAGGATGTACGAAGA
GATTGATCTGCACGGAGGAGAAATGA
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protein sequence of Ggra3836.t1

>Ggra3836.t1 ID=Ggra3836.t1|Name=Ggra3836.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=92bp
MVVRRGGVTKKKVRVLLQVPENVAKLLNESDGQVALKLESIEPPILTVGD
KRLVGRFEDVIGTDLIFDRSENENAGFIGGCTKRLICTEEK*
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mRNA from alignment at tig00000850_pilon:2189423..2189773+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3836.t1 ID=Ggra3836.t1|Name=Ggra3836.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=351bp|location=Sequence derived from alignment at tig00000850_pilon:2189423..2189773+ (Gracilaria gracilis GNS1m male)
ATGGTGGTCAGGCGAGGTGGAGTTACCAAAAAGAAGGTGCGTGTTCTGCT
TCAGGTACCGGAAAATGTCGCAAAGCTTCTCAACGAATCAGACGGACAGG
TCGCTCTTAAGGTATGTTGGGAGCGTTATCATCCGCACTTAATTTCCTGT
TTGTCTAGCGAGCTTTCGACTAACAACACTTAAAAGCTTGAGAGTATTGA
ACCACCCATACTCACCGTTGGCGACAAGCGTCTCGTAGGTCGCTTTGAAG
ATGTCATTGGTACTGACTTGATATTTGATCGTTCGGAGAATGAGAATGCT
GGTTTTATTGGAGGATGTACGAAGAGATTGATCTGCACGGAGGAGAAATG
A
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Coding sequence (CDS) from alignment at tig00000850_pilon:2189423..2189773+

>Ggra3836.t1 ID=Ggra3836.t1|Name=Ggra3836.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=276bp|location=Sequence derived from alignment at tig00000850_pilon:2189423..2189773+ (Gracilaria gracilis GNS1m male)
ATGGTGGTCAGGCGAGGTGGAGTTACCAAAAAGAAGGTGCGTGTTCTGCT
TCAGGTACCGGAAAATGTCGCAAAGCTTCTCAACGAATCAGACGGACAGG
TCGCTCTTAAGCTTGAGAGTATTGAACCACCCATACTCACCGTTGGCGAC
AAGCGTCTCGTAGGTCGCTTTGAAGATGTCATTGGTACTGACTTGATATT
TGATCGTTCGGAGAATGAGAATGCTGGTTTTATTGGAGGATGTACGAAGA
GATTGATCTGCACGGAGGAGAAATGA
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