Ggra3799.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra3799.t1
Unique NameGgra3799.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length516
Homology
BLAST of Ggra3799.t1 vs. uniprot
Match: A0A2V3IME4 (Glutamate receptor 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IME4_9FLOR)

HSP 1 Score: 406 bits (1044), Expect = 5.560e-134
Identity = 209/481 (43.45%), Postives = 296/481 (61.54%), Query Frame = 0
Query:   15 TVSAAVEISNALAGTSLRCCLVHEPPIAFLDDKEYVNGGISGVIADYMREMQALLGWNCSTVTLYEGGSQTTAFNDFIDMMESCTANGTARVDDQCQCDIGISGFLSTANRFDRVDFLPPFAQDGFRVIFDLSVSNTSINSLFFLTTFDRASWACIFALVILFTICKLLDYRFAPFVPQRHPQESDSSVSRFVRGVQNKPLAYRFPRAFLSVFKAMITQSDSDQEKRGSTPHRSILNLIVGTCGLFLVLAYEASMTASLVHEQIISDFRSVEDFKSCRIPPETVCIPSGDAIDSFWTHNVAEGNECHKGRSPH-KGTLEENYEAAVKGLCHYGILLDSTARMAVNGVYCGRFLLSDN-LLTGGLSLVLPKGSNLTRAMSIATMRITEESSPPSVERYFRNIDKCDVEASSILPLRKLVLFFVLAFSACGIYIVAMAMKKVWRGDRSARRHSGCKLVDESLSREYTILKLGNLARSLSYLSD 493
            TV  + ++S AL+G  LRCC++ EPPIAF+DD+ Y NGG+SG+IA Y+REMQ  L W+CS+V  Y GG QT+ FN F+ MME C+ NG  R D  C CDIGISG+    +RF RVDFLPPF  DG+ V+F +S S  S   +FF+TTFDR +W  IF L++LF+  K  D +F P       +E++  + RFV  +   P  YRF RA  S F  MI   DSD  +  +   + +LN ++   GLFL+L+YEASMTASLV E + + F+S++DF++CRI P  VC+P G A++ FW  ++A    CHK R P    + +E + A     C YG+LL+STA  A+N  YCG+ L ++  + +GGL++VLPK SNLT  MS AT++IT E + P +E+YF +I KC +   + L  RKL LFF +A       ++   +  VW  +++  R    K  ++S  R+   +   N +  +S  SD
Sbjct:   21 TVGHSSDMSGALSGLQLRCCILDEPPIAFIDDRTYANGGVSGIIAQYLREMQGYLNWSCSSVQHYTGGKQTS-FNHFVRMMEDCSENGAVRNDPGCTCDIGISGWFQNHHRFRRVDFLPPFVTDGYEVVFHISNSEVSGRRMFFITTFDRLAWVSIFGLMLLFSAIKFFDRKFCPIDSFEALEETNPRIQRFVHVLMKYPTLYRFRRALQSTFSRMILLPDSDVVENQTANRQWVLNTVISVSGLFLILSYEASMTASLVQETVSAGFQSIQDFQTCRISPAEVCLPGGGALEMFWNTSIAI-EVCHKQRQPFFASSYDELFHAVDNRTCKYGLLLESTANAAINSKYCGKLLAAEKPIYSGGLAMVLPKNSNLTDVMSYATLKITNEVATPGIEQYFASIPKCSINPETTLNFRKLRLFFGIALCTGAFLLLLRIINNVW--NQAIERRVEDK--EQSKLRDIKTMSSSNCSIDISMSSD 495          
BLAST of Ggra3799.t1 vs. uniprot
Match: A0A2V3IUK7 (Glutamate receptor ionotropic, NMDA 2C n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUK7_9FLOR)

HSP 1 Score: 398 bits (1022), Expect = 7.310e-131
Identity = 212/478 (44.35%), Postives = 300/478 (62.76%), Query Frame = 0
Query:    7 LAILSAVLTVSAAVEISNALAGTSLRCCLVHEPPIAFLDDKEYVNGGISGVIADYMREMQALLGWNCSTVTLYEGGSQTTAFNDFIDMMESCTANGTARVDDQCQCDIGISGFLSTANRFDRVDFLPPFAQDGFRVIFDLSVSNTSINSLFFLTTFDRASWACIFALVILFTICKLLDYRFAPFVPQRHPQESDS--SVSRFVRGVQNKPLAYRFPRAFLSVFKAMITQSDSDQEKRGSTPHRSILNLIVGTCGLFLVLAYEASMTASLVHEQIISDFRSVEDFKSCRIPPETVCIPSGDAIDSFWTHNVAEGNECH---KGRSPHKGTLEENYEAAVKGLCHYGILLDSTARMAVNGVYCGRFLLS-DNLLTGGLSLVLPKGSNLTRAMSIATMRITEESSPPSVERYFRNIDKCDVEASSILPLRKLVLFFVLAFSACGIYIVAMAMKKVWRGDRSARRH-SGCKLVDES-LSREY 476
            +A L+  +   A +++S AL+GT LRCC++HEPPI +LD   Y N GI+G+I  Y+ EMQALL W CS    Y  G  T+ FN FIDMM++CT NG  + D  C+C+IGI G+ ++A+R +RVD LPPF  DG RV F +S +  S + LFF+TTFD  SW C+FA++ILF + K LD RFAP      P  ++S      F+R   N+ +      +  S    ++ QSD D  +     H   LNLI+G  GL +VL+YEASMTA+LV E ++SD++SVED K+CRI PE VC+P G A+ +FW   +A G +CH   KG++  +G+ EE  +A   G C +G++LDST + A++G YCG+ L S + + TGGLS++LPK SNLT+AM +AT+++  E+S PS+++YF+ + KC     S+L   KL L FV A  AC   I     ++VWR   S ++  S     D S +S EY
Sbjct:   11 IAFLNFAINACAGIQLSKALSGTELRCCVIHEPPIVYLDPNTYSNNGINGIITKYLTEMQALLDWQCSEFIPYVEGDGTS-FNRFIDMMDNCTQNGAIKDDPACRCEIGIGGWFNSADRDERVDLLPPFVYDGIRVTFHVSNTRRSGSKLFFVTTFDLRSWLCLFAIIILFALAKFLDERFAPIPSADEPNAANSWGRCLHFLRTNWNRLIT-----SIRSTTLRIVLQSDHDIVQNQHGAHNFNLNLIIGIFGLLVVLSYEASMTATLVQETVVSDYQSVEDLKTCRIKPEDVCVPGGSAVLTFWNDAIAYG-DCHRESKGKNYFRGSFEETLDAVKNGTCKFGLVLDSTIQEAIHGKYCGQLLSSGEPIYTGGLSMILPKNSNLTKAMRLATLKLRNEASAPSLQQYFQTMSKCAPITGSVLTFEKLQLLFVFAIVACLGCISIKMWQRVWRRPNSPKKELSDISAADSSSMSTEY 481          
BLAST of Ggra3799.t1 vs. uniprot
Match: A0A2V3IMD4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMD4_9FLOR)

HSP 1 Score: 379 bits (972), Expect = 2.810e-122
Identity = 191/434 (44.01%), Postives = 267/434 (61.52%), Query Frame = 0
Query:   24 NALAGTSLRCCLVHEPPIAFLDDKEYVNGGISGVIADYMREMQALLGWNCSTVTLYEGGSQTTAFNDFIDMMESCTANGTARVDDQCQCDIGISGFLSTANRFDRVDFLPPFAQDGFRVIFDLSVSNTSINSLFFLTTFDRASWACIFALVILFTICKLLDY-----RFAPFVPQRHPQESDSSVSRFVRGVQNKPLAYRFPRAFLSVFKAMITQSDSDQEKRGSTPHRSILNLIVGTCGLFLVLAYEASMTASLVHEQIISDFRSVEDFKSCRIPPETVCIPSGDAIDSFWTHNVAEGNECHKGRSPHKGT-LEENYEAAVKGLCHYGILLDSTARMAVNGVYCGRFLLSDN-LLTGGLSLVLPKGSNLTRAMSIATMRITEESSPPSVERYFRNIDKCDVEASSILPLRKLVLFFVLAFSACGIYIVAMAMK 450
              LAG  LRCC+V+EPPIAFL+D+ Y N GI G+IA+Y+ +MQ  L W CS+V  Y  GS TT FN+FI MME C+ NGT + D  C+CDIGI G+ + + RF RVDFLPPF  D ++VIF +S S  S  S FF+TTFD   W CIF LV+LF   ++        R+ P  P   P      + R    + N P  YR   +   +F  MI   + +   R +     IL  +V  CGLFL+LAYEASMTAS+V E + S+F+S +DF++CRI P+ VC+P G + D++WT  +A+   CHKGRSPH  T  EE ++      C +GILL+ST    ++  YCG  L + N + TGGL++VLPK S  T  MS+AT++IT+ ++ PS+E ++     C  E ++ LP +KL LFF++AF    +++  + +K
Sbjct:   30 GVLAGAKLRCCIVYEPPIAFLNDRNYANLGIDGIIANYLNQMQGFLNWTCSSVQRYSDGS-TTGFNNFITMMERCSENGTIKDDPHCKCDIGIGGWFTNSKRFGRVDFLPPFVYDSYQVIFHISDSKVSGRSPFFITTFDSRGWLCIFGLVLLFATIRMFSAFGDHARYQPLEPTVTP------IRRIAHFLYNHPFFYRLRISIQRIFSRMILMPEPEDFSRPNNTFLWILKTVVTICGLFLILAYEASMTASIVQETVTSEFQSGKDFQTCRIDPKDVCLPRGGSFDTYWTEVLAKERPCHKGRSPHLMTSYEEVFQGVENRTCRFGILLESTVHSTIHRKYCGTILSNGNPIYTGGLAMVLPKDSMHTEVMSLATLKITDAATVPSLEEFYSTTGSCSAELATSLPFQKLQLFFIIAFCTGFLFLTVVVIK 456          
BLAST of Ggra3799.t1 vs. uniprot
Match: A0A2V3IMD5 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMD5_9FLOR)

HSP 1 Score: 329 bits (843), Expect = 2.320e-104
Identity = 181/442 (40.95%), Postives = 254/442 (57.47%), Query Frame = 0
Query:   36 VHEPPIAFLDDKEYVNGGISGVIADYMREMQALLGWNCSTVTLYEGGSQTTAFNDFIDMMESCTANGTARVD-DQCQCDIGISGFLSTANRFDRVDFLPPFAQDGFRVIFDLSVSNTSINSLFFLTTFDRASWACIFALVILFTICKLLDYRFAPFVPQRHPQESDSSVSRFVRGVQNKPLAYRFPRAFLSVFKAMITQSDSDQEKRGSTPHRSILNLIVGTCGLFLVLAYEASMTASLVHEQIISDFRSVEDFKSCRIPPETVCIPSGDAIDSFWTHNVAEGNECHKGRS-PHKGTLEENYEAAVKGLCHYGILLDSTARMAVNGVYCGRF-LLSDNLLTGGLSLVLPKGSNLTRAMSIATMRITEESSPPSVERYFRNIDKCDVEASSILPLRKLVLFFVLAFSACGIYIVAMAMKKVWRGDRSARRHSGCKLVDESLSR 474
            +HE PI+F++D+++ N GI G +++Y+ E+Q  LGW CS+VTL++    T+ FN FI+ M  CT N +  V  + C CDIGI G+     R+ +VDFLPPF  D +RV   +S ++ S    FFL TFD  SW  I AL  +FT+ KLLD RFA   P   P    S + R +  +   P  YR  +A  S    ++ Q D++    G +  +  LNL++G C LFLVL++EASMTASLV E+I S + S EDF+SC+IPP  VC   G A++ FW  N+A  N CH G    +  T EE Y+    G C + I L+S     +    CG+  LL + L T GLS+V+PKGSNLT AMS ATM +        +E + R   KC  + +S L  RKL LFF+LAFS C   +  M +  ++   +SA + +  + VD   S+
Sbjct:    1 MHEAPISFINDRKFSNNGIDGAVSEYVSELQGFLGWRCSSVTLFQH-QNTSGFNAFIEQMHECTTNQSTGVSSNSCPCDIGIGGWFQNQFRYGKVDFLPPFVHDRYRVATHVSNTDASGEMPFFLKTFDSLSWITIVALTCIFTLLKLLDSRFAVAEPYT-PLSGVSRIRRCLHFLWKHPRLYRLRKAGQSSVTRLMLQPDNEVVDNGKSTRQWFLNLVIGICALFLVLSFEASMTASLVQEKITSTYESPEDFRSCKIPPSDVCALRGGALEMFWNTNIATSN-CHNGNPIQYLSTYEEIYDGLASGKCKFSICLESVITTQIRTQSCGQLVLLEEPLYTSGLSMVVPKGSNLTEAMSKATMTLLLSQPSSFLESFLRKWPKCTKKVASTLTFRKLKLFFILAFSVCAAILFVMLLGSLYPVKKSANKRAIGRSVDSKSSK 439          
BLAST of Ggra3799.t1 vs. uniprot
Match: R7Q0P8 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q0P8_CHOCR)

HSP 1 Score: 119 bits (299), Expect = 7.170e-27
Identity = 68/198 (34.34%), Postives = 102/198 (51.52%), Query Frame = 0
Query:   77 TLYEGGSQTTA--FNDFIDMMESC-TANGTARVDDQCQCDIGISGFLSTANRFDRVDFLPPFAQDGFRVIFDLSVSNTSINSLFFLTTFDRASWACIFALVILFTICKLLDYRFAPFVPQRHPQESDSSVSRFVRGVQNKP-LAYRFPRAFLSVFKAMITQSDSDQEKRGSTPHRSILNLIVGTCGLFLVLAYEASMT 270
            TLY   S+  +  FN  ++ M+ C T  GT R D  C CD+ + G++ +  R  +VDFLPPF  DG  +   +  ++ +    FFLT F  A W  +  L ++FT  K+LD RF P      P  +     R +R    K  + YR  +A  S    M+  S+SD      +  + +LNL++  C LF++LAYE+SMT
Sbjct:   80 TLYRDESKEVSVPFNSIVEKMDRCVTEEGTMREDPDCNCDMAVGGWMESDTRLGKVDFLPPFLIDGIGIATHVDETSVASAGAFFLTAFSLAVWGLVVMLSVVFTFLKMLDRRFVPPDDSYTPLPASEPRLRRIRHYLLKSRIPYRLRKALQSTLSRMVGFSNSDPVTDKESSRQWVLNLVIACCSLFIILAYESSMT 277          
The following BLAST results are available for this feature:
BLAST of Ggra3799.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IME45.560e-13443.45Glutamate receptor 1 n=1 Tax=Gracilariopsis chorda... [more]
A0A2V3IUK77.310e-13144.35Glutamate receptor ionotropic, NMDA 2C n=1 Tax=Gra... [more]
A0A2V3IMD42.810e-12244.01Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IMD52.320e-10440.95Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q0P87.170e-2734.34Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.287.70coord: 155..298
e-value: 5.5E-9
score: 37.8
NoneNo IPR availableGENE3D3.40.190.10coord: 21..154
e-value: 2.6E-7
score: 32.0
NoneNo IPR availablePANTHERPTHR18966:SF354SUBFAMILY NOT NAMEDcoord: 99..450
NoneNo IPR availablePANTHERPTHR18966IONOTROPIC GLUTAMATE RECEPTORcoord: 99..450
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 266..428
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..16
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 165..184
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 429..449
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 248..265
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..164
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 185..247
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..27
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 450..515
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 30..400
NoneNo IPR availableTMHMMTMhelixcoord: 429..448

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1979625..1981528 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3799.t1Ggra3799.t1Gracilaria gracilis GNS1m malemRNAtig00000850_pilon 1979625..1981528 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra3799.t1 ID=Ggra3799.t1|Name=Ggra3799.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=516bp
MHLKLWLAILSAVLTVSAAVEISNALAGTSLRCCLVHEPPIAFLDDKEYV
NGGISGVIADYMREMQALLGWNCSTVTLYEGGSQTTAFNDFIDMMESCTA
NGTARVDDQCQCDIGISGFLSTANRFDRVDFLPPFAQDGFRVIFDLSVSN
TSINSLFFLTTFDRASWACIFALVILFTICKLLDYRFAPFVPQRHPQESD
SSVSRFVRGVQNKPLAYRFPRAFLSVFKAMITQSDSDQEKRGSTPHRSIL
NLIVGTCGLFLVLAYEASMTASLVHEQIISDFRSVEDFKSCRIPPETVCI
PSGDAIDSFWTHNVAEGNECHKGRSPHKGTLEENYEAAVKGLCHYGILLD
STARMAVNGVYCGRFLLSDNLLTGGLSLVLPKGSNLTRAMSIATMRITEE
SSPPSVERYFRNIDKCDVEASSILPLRKLVLFFVLAFSACGIYIVAMAMK
KVWRGDRSARRHSGCKLVDESLSREYTILKLGNLARSLSYLSDDRSALGD
VSAQEKRREVHDWLL*
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