Ggra3799.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3799.t1
Unique NameGgra3799.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length516
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1979625..1981528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog32264.tetur12g00180.1
Preferred nameGRIK1
PFAMsANF_receptor,Lig_chan,Lig_chan-Glu_bd,SBP_bac_3
Max annot lvl33208|Metazoa
KEGG koko:K05201,ko:K05202,ko:K05313
KEGG TC1.A.10.1.11,1.A.10.1.14,1.A.10.1.15,1.A.10.1.16,1.A.10.1.17,1.A.10.1.5
KEGG Pathwayko04080,ko04724,map04080,map04724
GOsGO:0003674,GO:0004888,GO:0004970,GO:0005215,GO:0005216,GO:0005230,GO:0005261,GO:0005267,GO:0005272,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006814,GO:0007154,GO:0007165,GO:0007166,GO:0007215,GO:0007267,GO:0007268,GO:0007610,GO:0007632,GO:0007634,GO:0008066,GO:0008150,GO:0008324,GO:0009314,GO:0009416,GO:0009628,GO:0009642,GO:0009987,GO:0010646,GO:0015075,GO:0015077,GO:0015079,GO:0015081,GO:0015267,GO:0015276,GO:0015277,GO:0015318,GO:0015672,GO:0016020,GO:0016057,GO:0022803,GO:0022824,GO:0022834,GO:0022835,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0022890,GO:0023051,GO:0023052,GO:0030001,GO:0030594,GO:0032501,GO:0034220,GO:0035235,GO:0035249,GO:0035725,GO:0038023,GO:0042391,GO:0044464,GO:0046873,GO:0050789,GO:0050794,GO:0050803,GO:0050804,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0060025,GO:0060089,GO:0065007,GO:0065008,GO:0071214,GO:0071478,GO:0071482,GO:0071484,GO:0071632,GO:0071804,GO:0071805,GO:0071944,GO:0098655,GO:0098660,GO:0098662,GO:0098916,GO:0099094,GO:0099177,GO:0099536,GO:0099537,GO:0104004
Evalue9.52e-06
EggNOG OGsKOG1052@1|root,KOG1052@2759|Eukaryota,38BIY@33154|Opisthokonta,3B9S8@33208|Metazoa,3CTGU@33213|Bilateria,41VGM@6656|Arthropoda
Descriptionionotropic glutamate receptor activity
COG categoryEPT
BRITEko00000,ko00001,ko04040
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3799Ggra3799Gracilaria gracilis GNS1m malegenetig00000850_pilon 1979625..1981528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3799.t1Ggra3799.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 1979625..1981528 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3799.t1.start1Ggra3799.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 1979625..1979627 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3799.t1.CDS1Ggra3799.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1979625..1979777 +
Ggra3799.t1.CDS2Ggra3799.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1979890..1980415 +
Ggra3799.t1.CDS3Ggra3799.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1980496..1980625 +
Ggra3799.t1.CDS4Ggra3799.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1980707..1980850 +
Ggra3799.t1.CDS5Ggra3799.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1980934..1981528 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3799.t1.exon1Ggra3799.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 1979625..1979777 +
Ggra3799.t1.exon2Ggra3799.t1.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 1979890..1980415 +
Ggra3799.t1.exon3Ggra3799.t1.exon3Gracilaria gracilis GNS1m maleexontig00000850_pilon 1980496..1980625 +
Ggra3799.t1.exon4Ggra3799.t1.exon4Gracilaria gracilis GNS1m maleexontig00000850_pilon 1980707..1980850 +
Ggra3799.t1.exon5Ggra3799.t1.exon5Gracilaria gracilis GNS1m maleexontig00000850_pilon 1980934..1981528 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3799.t1.intron1Ggra3799.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 1979778..1979889 +
Ggra3799.t1.intron2Ggra3799.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000850_pilon 1980416..1980495 +
Ggra3799.t1.intron3Ggra3799.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000850_pilon 1980626..1980706 +
Ggra3799.t1.intron4Ggra3799.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000850_pilon 1980851..1980933 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3799.t1.stop1Ggra3799.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 1981526..1981528 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3799.t1 ID=Ggra3799.t1|Name=Ggra3799.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=516bp
MHLKLWLAILSAVLTVSAAVEISNALAGTSLRCCLVHEPPIAFLDDKEYV
NGGISGVIADYMREMQALLGWNCSTVTLYEGGSQTTAFNDFIDMMESCTA
NGTARVDDQCQCDIGISGFLSTANRFDRVDFLPPFAQDGFRVIFDLSVSN
TSINSLFFLTTFDRASWACIFALVILFTICKLLDYRFAPFVPQRHPQESD
SSVSRFVRGVQNKPLAYRFPRAFLSVFKAMITQSDSDQEKRGSTPHRSIL
NLIVGTCGLFLVLAYEASMTASLVHEQIISDFRSVEDFKSCRIPPETVCI
PSGDAIDSFWTHNVAEGNECHKGRSPHKGTLEENYEAAVKGLCHYGILLD
STARMAVNGVYCGRFLLSDNLLTGGLSLVLPKGSNLTRAMSIATMRITEE
SSPPSVERYFRNIDKCDVEASSILPLRKLVLFFVLAFSACGIYIVAMAMK
KVWRGDRSARRHSGCKLVDESLSREYTILKLGNLARSLSYLSDDRSALGD
VSAQEKRREVHDWLL*
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spliced messenger RNA

>Ggra3799.t1 ID=Ggra3799.t1|Name=Ggra3799.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1548bp|location=Sequence derived from alignment at tig00000850_pilon:1979625..1981528+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCTGAAGCTTTGGCTAGCCATACTCAGCGCCGTTCTAACCGTCTC
CGCAGCCGTCGAAATTTCCAATGCTCTGGCCGGAACTTCGCTCCGCTGTT
GCTTGGTGCACGAGCCTCCCATTGCCTTCCTCGACGACAAGGAGTATGTC
AATGGCGGCATCAGCGGCGTCATTGCTGACTACATGAGAGAGATGCAAGC
CCTTCTTGGTTGGAACTGTTCCACAGTCACGCTCTACGAGGGCGGCAGCC
AAACAACCGCCTTCAACGACTTCATCGACATGATGGAGAGCTGTACCGCC
AACGGTACTGCCAGAGTTGACGACCAGTGCCAATGCGACATTGGAATCAG
TGGTTTTCTCTCTACTGCCAATCGCTTCGACCGCGTTGACTTTCTACCTC
CCTTCGCTCAAGATGGCTTTCGAGTAATTTTCGATCTCTCTGTTTCAAAC
ACATCTATCAACAGTTTGTTCTTCCTTACTACGTTCGACAGGGCTTCATG
GGCCTGCATCTTCGCCCTCGTCATACTTTTCACCATATGCAAACTTCTTG
ACTACCGCTTTGCACCGTTCGTACCTCAACGTCATCCGCAAGAAAGCGAC
TCTTCCGTTTCGCGCTTTGTTCGTGGCGTTCAAAACAAACCTCTGGCGTA
CAGGTTTCCACGCGCGTTCTTGTCTGTGTTTAAAGCGATGATAACGCAGT
CTGACTCGGACCAAGAAAAGCGGGGCTCAACACCACACCGCTCTATTCTA
AACCTAATTGTTGGTACCTGCGGACTTTTTCTAGTCTTGGCTTACGAAGC
CAGTATGACAGCATCGCTTGTCCACGAACAGATAATATCCGATTTTCGAT
CAGTGGAGGACTTCAAGAGCTGTCGTATTCCTCCAGAAACGGTGTGTATT
CCTAGCGGTGATGCAATTGACAGCTTTTGGACGCATAATGTTGCAGAGGG
CAATGAATGTCACAAAGGAAGATCGCCACATAAGGGAACTCTAGAGGAGA
ACTACGAAGCCGCGGTGAAAGGCCTGTGCCACTACGGTATCCTTCTGGAT
TCGACAGCCAGGATGGCTGTGAATGGTGTCTACTGTGGACGATTCCTACT
TAGCGATAACTTGTTGACTGGCGGCTTGTCTCTCGTGTTACCAAAGGGAT
CCAACCTGACTCGCGCCATGAGTATTGCAACCATGAGGATCACAGAAGAA
TCATCACCTCCCAGTGTGGAGAGATACTTTCGAAACATTGATAAGTGCGA
TGTGGAAGCGAGCTCGATCCTGCCACTCAGGAAGCTGGTGTTGTTTTTCG
TGCTCGCGTTTTCGGCTTGTGGTATCTACATCGTTGCGATGGCAATGAAG
AAAGTGTGGCGGGGAGACAGATCGGCGAGAAGGCACAGCGGTTGTAAGCT
TGTAGACGAATCTTTGAGTCGTGAGTACACAATTTTGAAGCTTGGAAATC
TTGCAAGGAGCCTGTCGTACCTTAGCGATGACCGAAGCGCACTTGGAGAC
GTCTCTGCACAAGAGAAGCGGCGTGAGGTTCATGACTGGTTGCTGTGA
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protein sequence of Ggra3799.t1

>Ggra3799.t1 ID=Ggra3799.t1|Name=Ggra3799.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=516bp
MHLKLWLAILSAVLTVSAAVEISNALAGTSLRCCLVHEPPIAFLDDKEYV
NGGISGVIADYMREMQALLGWNCSTVTLYEGGSQTTAFNDFIDMMESCTA
NGTARVDDQCQCDIGISGFLSTANRFDRVDFLPPFAQDGFRVIFDLSVSN
TSINSLFFLTTFDRASWACIFALVILFTICKLLDYRFAPFVPQRHPQESD
SSVSRFVRGVQNKPLAYRFPRAFLSVFKAMITQSDSDQEKRGSTPHRSIL
NLIVGTCGLFLVLAYEASMTASLVHEQIISDFRSVEDFKSCRIPPETVCI
PSGDAIDSFWTHNVAEGNECHKGRSPHKGTLEENYEAAVKGLCHYGILLD
STARMAVNGVYCGRFLLSDNLLTGGLSLVLPKGSNLTRAMSIATMRITEE
SSPPSVERYFRNIDKCDVEASSILPLRKLVLFFVLAFSACGIYIVAMAMK
KVWRGDRSARRHSGCKLVDESLSREYTILKLGNLARSLSYLSDDRSALGD
VSAQEKRREVHDWLL*
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mRNA from alignment at tig00000850_pilon:1979625..1981528+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3799.t1 ID=Ggra3799.t1|Name=Ggra3799.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1904bp|location=Sequence derived from alignment at tig00000850_pilon:1979625..1981528+ (Gracilaria gracilis GNS1m male)
ATGCACCTGAAGCTTTGGCTAGCCATACTCAGCGCCGTTCTAACCGTCTC
CGCAGCCGTCGAAATTTCCAATGCTCTGGCCGGAACTTCGCTCCGCTGTT
GCTTGGTGCACGAGCCTCCCATTGCCTTCCTCGACGACAAGGAGTATGTC
AATGTGAGTACAGCCGTCCACCCCCACCACTTCTGCATTGCAAATCCAGC
GCCCACCGCTCGCATTTCGTACTAACGCAACGCAATAACCGTTCTTCCCT
TGTCCATCCATCCAGGGCGGCATCAGCGGCGTCATTGCTGACTACATGAG
AGAGATGCAAGCCCTTCTTGGTTGGAACTGTTCCACAGTCACGCTCTACG
AGGGCGGCAGCCAAACAACCGCCTTCAACGACTTCATCGACATGATGGAG
AGCTGTACCGCCAACGGTACTGCCAGAGTTGACGACCAGTGCCAATGCGA
CATTGGAATCAGTGGTTTTCTCTCTACTGCCAATCGCTTCGACCGCGTTG
ACTTTCTACCTCCCTTCGCTCAAGATGGCTTTCGAGTAATTTTCGATCTC
TCTGTTTCAAACACATCTATCAACAGTTTGTTCTTCCTTACTACGTTCGA
CAGGGCTTCATGGGCCTGCATCTTCGCCCTCGTCATACTTTTCACCATAT
GCAAACTTCTTGACTACCGCTTTGCACCGTTCGTACCTCAACGTCATCCG
CAAGAAAGCGACTCTTCCGTTTCGCGCTTTGTTCGTGGCGTTCAAAACAA
ACCTCTGGCGTACAGGTTTCCACGCGCGTTCTTGTCTGTGTGTAAGTGCA
ATGCAGGGTACCGTCTATGTCAATGCGTCCAGTCGGAACGGCACAACTAA
CGCGCACCCATGTATATGCAGTTAAAGCGATGATAACGCAGTCTGACTCG
GACCAAGAAAAGCGGGGCTCAACACCACACCGCTCTATTCTAAACCTAAT
TGTTGGTACCTGCGGACTTTTTCTAGTCTTGGCTTACGAAGCCAGTATGA
CGTAAGTTCTACACCTTTTTGGTCAAACATGGTTGAGAGAATATGTAGAC
TGAGCTGAGATTTACACGTGAACTGCTGGCAGAGCATCGCTTGTCCACGA
ACAGATAATATCCGATTTTCGATCAGTGGAGGACTTCAAGAGCTGTCGTA
TTCCTCCAGAAACGGTGTGTATTCCTAGCGGTGATGCAATTGACAGCTTT
TGGACGCATAATGTTGCAGAGGGCAAGTATGTGCGTATCACGTCAGAATG
CGCGACGAATGAGGGATGTGATGCTAACACCATACTCAATGTGCCCATCT
TGCGTACAGTGAATGTCACAAAGGAAGATCGCCACATAAGGGAACTCTAG
AGGAGAACTACGAAGCCGCGGTGAAAGGCCTGTGCCACTACGGTATCCTT
CTGGATTCGACAGCCAGGATGGCTGTGAATGGTGTCTACTGTGGACGATT
CCTACTTAGCGATAACTTGTTGACTGGCGGCTTGTCTCTCGTGTTACCAA
AGGGATCCAACCTGACTCGCGCCATGAGTATTGCAACCATGAGGATCACA
GAAGAATCATCACCTCCCAGTGTGGAGAGATACTTTCGAAACATTGATAA
GTGCGATGTGGAAGCGAGCTCGATCCTGCCACTCAGGAAGCTGGTGTTGT
TTTTCGTGCTCGCGTTTTCGGCTTGTGGTATCTACATCGTTGCGATGGCA
ATGAAGAAAGTGTGGCGGGGAGACAGATCGGCGAGAAGGCACAGCGGTTG
TAAGCTTGTAGACGAATCTTTGAGTCGTGAGTACACAATTTTGAAGCTTG
GAAATCTTGCAAGGAGCCTGTCGTACCTTAGCGATGACCGAAGCGCACTT
GGAGACGTCTCTGCACAAGAGAAGCGGCGTGAGGTTCATGACTGGTTGCT
GTGA
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Coding sequence (CDS) from alignment at tig00000850_pilon:1979625..1981528+

>Ggra3799.t1 ID=Ggra3799.t1|Name=Ggra3799.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1548bp|location=Sequence derived from alignment at tig00000850_pilon:1979625..1981528+ (Gracilaria gracilis GNS1m male)
ATGCACCTGAAGCTTTGGCTAGCCATACTCAGCGCCGTTCTAACCGTCTC
CGCAGCCGTCGAAATTTCCAATGCTCTGGCCGGAACTTCGCTCCGCTGTT
GCTTGGTGCACGAGCCTCCCATTGCCTTCCTCGACGACAAGGAGTATGTC
AATGGCGGCATCAGCGGCGTCATTGCTGACTACATGAGAGAGATGCAAGC
CCTTCTTGGTTGGAACTGTTCCACAGTCACGCTCTACGAGGGCGGCAGCC
AAACAACCGCCTTCAACGACTTCATCGACATGATGGAGAGCTGTACCGCC
AACGGTACTGCCAGAGTTGACGACCAGTGCCAATGCGACATTGGAATCAG
TGGTTTTCTCTCTACTGCCAATCGCTTCGACCGCGTTGACTTTCTACCTC
CCTTCGCTCAAGATGGCTTTCGAGTAATTTTCGATCTCTCTGTTTCAAAC
ACATCTATCAACAGTTTGTTCTTCCTTACTACGTTCGACAGGGCTTCATG
GGCCTGCATCTTCGCCCTCGTCATACTTTTCACCATATGCAAACTTCTTG
ACTACCGCTTTGCACCGTTCGTACCTCAACGTCATCCGCAAGAAAGCGAC
TCTTCCGTTTCGCGCTTTGTTCGTGGCGTTCAAAACAAACCTCTGGCGTA
CAGGTTTCCACGCGCGTTCTTGTCTGTGTTTAAAGCGATGATAACGCAGT
CTGACTCGGACCAAGAAAAGCGGGGCTCAACACCACACCGCTCTATTCTA
AACCTAATTGTTGGTACCTGCGGACTTTTTCTAGTCTTGGCTTACGAAGC
CAGTATGACAGCATCGCTTGTCCACGAACAGATAATATCCGATTTTCGAT
CAGTGGAGGACTTCAAGAGCTGTCGTATTCCTCCAGAAACGGTGTGTATT
CCTAGCGGTGATGCAATTGACAGCTTTTGGACGCATAATGTTGCAGAGGG
CAATGAATGTCACAAAGGAAGATCGCCACATAAGGGAACTCTAGAGGAGA
ACTACGAAGCCGCGGTGAAAGGCCTGTGCCACTACGGTATCCTTCTGGAT
TCGACAGCCAGGATGGCTGTGAATGGTGTCTACTGTGGACGATTCCTACT
TAGCGATAACTTGTTGACTGGCGGCTTGTCTCTCGTGTTACCAAAGGGAT
CCAACCTGACTCGCGCCATGAGTATTGCAACCATGAGGATCACAGAAGAA
TCATCACCTCCCAGTGTGGAGAGATACTTTCGAAACATTGATAAGTGCGA
TGTGGAAGCGAGCTCGATCCTGCCACTCAGGAAGCTGGTGTTGTTTTTCG
TGCTCGCGTTTTCGGCTTGTGGTATCTACATCGTTGCGATGGCAATGAAG
AAAGTGTGGCGGGGAGACAGATCGGCGAGAAGGCACAGCGGTTGTAAGCT
TGTAGACGAATCTTTGAGTCGTGAGTACACAATTTTGAAGCTTGGAAATC
TTGCAAGGAGCCTGTCGTACCTTAGCGATGACCGAAGCGCACTTGGAGAC
GTCTCTGCACAAGAGAAGCGGCGTGAGGTTCATGACTGGTTGCTGTGA
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