Ggra3646.t3 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra3646.t3
Unique NameGgra3646.t3
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length353
Homology
BLAST of Ggra3646.t3 vs. uniprot
Match: A0A2V3ILZ6 (CDT1 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILZ6_9FLOR)

HSP 1 Score: 470 bits (1210), Expect = 3.370e-161
Identity = 251/348 (72.13%), Postives = 290/348 (83.33%), Query Frame = 0
Query:    1 MLPKSYALVLDTLIGLETAVSLLKVRKMRPTVGELRDIVARTTRRDFTIKVLSQLAHIVPEAVAVLPGPKVTVNPKRPSDSLIVRLDEPDDDRDRSGNAKNKCEQDTKSSLGEGYARLRRSLLHKRLLQRVRQHHDSFLERISETRYKSDVWHPEFDLEKEVSELPSPPLSFDETSRAAVRTVKRVRFNLPDADETRDDLDENETSPDEDEDDFADGCISKTLLERVRARSKSQREQQSKLVEEKKTNESLLSKLPSTMDSIYIVMRNEKRSAMGWSQLILKLEKLHPKKWVRDDLQKQVDSIVLLAPEWCKKVELKSSRGGHAFRVVSESAFNACREKVSSTKHHDL 348
            MLPKSYALVLDTLI LETAV+L++VRKMRPTVG LRDIVAR+TRRDFT+KVLSQLAH+VPEAVAVLPGPK T NPKRPSD+LIVRLD+ D+DR   G+          SSLG   ARLRRSLLHKRLLQ+VR+HH+ FLE+IS TRYKSD+WHP+FDLEKEVSELP+PPL   E SR  VR VKRVRFNLPD+       ++++TSP+EDE D A+GCI ++LLERVRARS++ ++Q+SKL EEKK NE L SKLP TMDSI++VMRNEKR AMGW QLILKLEKLHPKKW R DL+KQ+D+I LLA EWCKKVEL SSRGG+AFRVVSE+AF   REK+ STK HDL
Sbjct:  184 MLPKSYALVLDTLIALETAVALVRVRKMRPTVGALRDIVARSTRRDFTVKVLSQLAHLVPEAVAVLPGPKATFNPKRPSDNLIVRLDKVDEDRGADGDKGR-----VTSSLGVAPARLRRSLLHKRLLQQVRKHHEKFLEQISATRYKSDIWHPDFDLEKEVSELPAPPLYTSEKSRERVRQVKRVRFNLPDSTTLDASHEQDDTSPEEDEGDEAEGCIPRSLLERVRARSEALKKQESKLKEEKKRNEGLFSKLPDTMDSIFVVMRNEKRFAMGWQQLILKLEKLHPKKWTRTDLEKQLDAIALLATEWCKKVELTSSRGGYAFRVVSEAAFGQAREKLVSTKSHDL 526          
BLAST of Ggra3646.t3 vs. uniprot
Match: R7QNS9 (CDT1 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QNS9_CHOCR)

HSP 1 Score: 288 bits (737), Expect = 1.130e-89
Identity = 171/356 (48.03%), Postives = 241/356 (67.70%), Query Frame = 0
Query:    1 MLPKSYALVLDTLIGLETAVSLLKVRKMRPTVGELRDIVARTTRRDFTIKVLSQLAHIVPEAVAVLPGPKVTVNPKRPSDSLIVRLDEPDDDRDRSGNAKNKCEQDTKSS-LGEGYARLRRSLLHKRLLQRVRQHHDSFLERISETRYKSDVWHPEFDLEKEVSELPSPPLSFDETSRAAVRTVKRVRFNLPDADE------TRDDLDENETSPDED-EDDFADGCISKTLLERVRARSKSQREQQSKLVEEKKTNESLLSKLPSTMDSIYIVMRNEKRSAMGWSQLILKLEKLHPKKWVRDDLQKQVDSIVLLAPEWCKKVELKSSRGGHAFRVVSESAFNACREKVSSTKHHDL 348
            MLP+S+ L+LD LIGLE+AV+LLK R+  PTV  +R+IV R+T+R+FT K+LSQLAH++PEA+AV+PG       +   DS ++RLD  D D D  G A     ++T SS +G+  AR+RRSLLHKRLL +V++ H  FL + S +R++ D+WH +FDLE  V ELP+PPL   ET   + R         PDA++       + D+  + +  +E  E    D CI   LL++VRARS++Q+    K+  EK TN +LLSKLP TMD++  ++R E+RSA+GW QLI K+EKLHPKKW ++DL +Q+++I  L  +WCKKVELKSSRGG AFRV SE+++ + R KVS+T  + +
Sbjct:  193 MLPQSHLLLLDVLIGLESAVALLKTRRTMPTVAAVREIVQRSTKRNFTPKILSQLAHLIPEAIAVVPGTSSPTKKRARLDSFLIRLDSVDADGD--GGASPVTGKNTGSSVIGDSAARIRRSLLHKRLLAQVKEEHGKFLRKRSISRHEGDLWHEDFDLEVHVKELPAPPLYSVETVSPS-RPKPISLLVQPDAEKKSKLLAAKIDVSADASKAEERIESHDIDDCIPAGLLQKVRARSEAQKVHAVKMETEKATNRTLLSKLPVTMDTVCSILRTERRSAVGWRQLIGKVEKLHPKKWSKEDLDRQLNAIATLGSDWCKKVELKSSRGGFAFRVHSETSYVSARAKVSATVSYSV 545          
The following BLAST results are available for this feature:
BLAST of Ggra3646.t3 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3ILZ63.370e-16172.13CDT1 domain-containing protein n=1 Tax=Gracilariop... [more]
R7QNS91.130e-8948.03CDT1 domain-containing protein n=1 Tax=Chondrus cr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014939CDT1 Geminin-binding domain-likeSMARTSM01075CDT1_2coord: 2..172
e-value: 3.9E-10
score: 49.7
IPR014939CDT1 Geminin-binding domain-likePFAMPF08839CDT1coord: 2..168
e-value: 1.7E-21
score: 77.1
IPR038090DNA replication factor Cdt1, C-terminal WH domain superfamilyGENE3D1.10.10.1420coord: 216..347
e-value: 4.9E-18
score: 67.1
IPR032054DNA replication factor Cdt1, C-terminalPFAMPF16679CDT1_Ccoord: 223..316
e-value: 1.2E-9
score: 38.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 195..214
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 194..214
NoneNo IPR availablePANTHERPTHR28637:SF1DNA REPLICATION FACTOR CDT1coord: 2..169
NoneNo IPR availablePANTHERPTHR28637:SF1DNA REPLICATION FACTOR CDT1coord: 215..341
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 24..352
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..23
IPR045173DNA replication factor Cdt1PANTHERPTHR28637DNA REPLICATION FACTOR CDT1coord: 2..169
IPR045173DNA replication factor Cdt1PANTHERPTHR28637DNA REPLICATION FACTOR CDT1coord: 215..341
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 2..169

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:719671..720729 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3646.t3Ggra3646.t3Gracilaria gracilis GNS1m malemRNAtig00000850_pilon 719671..720729 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra3646.t3 ID=Ggra3646.t3|Name=Ggra3646.t3|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=353bp
MLPKSYALVLDTLIGLETAVSLLKVRKMRPTVGELRDIVARTTRRDFTIK
VLSQLAHIVPEAVAVLPGPKVTVNPKRPSDSLIVRLDEPDDDRDRSGNAK
NKCEQDTKSSLGEGYARLRRSLLHKRLLQRVRQHHDSFLERISETRYKSD
VWHPEFDLEKEVSELPSPPLSFDETSRAAVRTVKRVRFNLPDADETRDDL
DENETSPDEDEDDFADGCISKTLLERVRARSKSQREQQSKLVEEKKTNES
LLSKLPSTMDSIYIVMRNEKRSAMGWSQLILKLEKLHPKKWVRDDLQKQV
DSIVLLAPEWCKKVELKSSRGGHAFRVVSESAFNACREKVSSTKHHDLSL
DQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014939CDT1_Gemini-bd-like
IPR038090Cdt1_C_WH_dom_sf
IPR032054Cdt1_C
IPR045173Cdt1
IPR036390WH_DNA-bd_sf