Ggra3646.t3 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3646.t3
Unique NameGgra3646.t3
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length353
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:719671..720729 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7668.SPU_002046-tr
Preferred nameCDT1
PFAMsCDT1,CDT1_C
Max annot lvl33208|Metazoa
KEGG koko:K10727
GOsGO:0000003,GO:0000070,GO:0000075,GO:0000076,GO:0000082,GO:0000083,GO:0000226,GO:0000278,GO:0000280,GO:0000281,GO:0000819,GO:0000910,GO:0002064,GO:0002065,GO:0002066,GO:0002376,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006277,GO:0006355,GO:0006725,GO:0006807,GO:0006955,GO:0006959,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007059,GO:0007080,GO:0007088,GO:0007098,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007304,GO:0007306,GO:0007307,GO:0007346,GO:0007399,GO:0008150,GO:0008152,GO:0008608,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009653,GO:0009743,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010001,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010638,GO:0010927,GO:0010948,GO:0010965,GO:0016043,GO:0016049,GO:0016604,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019730,GO:0019953,GO:0021782,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030071,GO:0030154,GO:0030174,GO:0030703,GO:0030707,GO:0030855,GO:0031023,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031570,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032989,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033260,GO:0033262,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0035561,GO:0035563,GO:0040007,GO:0042023,GO:0042063,GO:0042065,GO:0042221,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0045740,GO:0045786,GO:0045787,GO:0045840,GO:0045842,GO:0045930,GO:0045931,GO:0045935,GO:0046483,GO:0048285,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048588,GO:0048589,GO:0048609,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050000,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051098,GO:0051099,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051252,GO:0051276,GO:0051298,GO:0051301,GO:0051303,GO:0051310,GO:0051315,GO:0051383,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051707,GO:0051726,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060255,GO:0060341,GO:0060429,GO:0061640,GO:0062033,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0071163,GO:0071704,GO:0071824,GO:0071840,GO:0071897,GO:0072708,GO:0080090,GO:0090068,GO:0090231,GO:0090233,GO:0090266,GO:0090304,GO:0090329,GO:0097159,GO:0098813,GO:0140014,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901700,GO:1901970,GO:1901976,GO:1901977,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902426,GO:1902595,GO:1903047,GO:1903504,GO:1903506,GO:1903827,GO:1903828,GO:1903829,GO:1905340,GO:1905341,GO:1905342,GO:1905818,GO:1905820,GO:2000105,GO:2000112,GO:2001141,GO:2001176,GO:2001178,GO:2001252
Evalue5.39e-08
EggNOG OGsKOG4762@1|root,KOG4762@2759|Eukaryota,38HTF@33154|Opisthokonta,3BDTD@33208|Metazoa,3CTBB@33213|Bilateria
DescriptionDNA replication factor
COG categoryL
BRITEko00000,ko03032,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3646Ggra3646Gracilaria gracilis GNS1m malegenetig00000850_pilon 719671..721293 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3646.t3.stop1Ggra3646.t3.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 719671..719673 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3646.t3.CDS1Ggra3646.t3.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 719671..720729 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3646.t3.exon1Ggra3646.t3.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 719671..720729 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3646.t3.start1Ggra3646.t3.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 720727..720729 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3646.t3Ggra3646.t3Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 719671..720729 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3646.t3 ID=Ggra3646.t3|Name=Ggra3646.t3|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=353bp
MLPKSYALVLDTLIGLETAVSLLKVRKMRPTVGELRDIVARTTRRDFTIK
VLSQLAHIVPEAVAVLPGPKVTVNPKRPSDSLIVRLDEPDDDRDRSGNAK
NKCEQDTKSSLGEGYARLRRSLLHKRLLQRVRQHHDSFLERISETRYKSD
VWHPEFDLEKEVSELPSPPLSFDETSRAAVRTVKRVRFNLPDADETRDDL
DENETSPDEDEDDFADGCISKTLLERVRARSKSQREQQSKLVEEKKTNES
LLSKLPSTMDSIYIVMRNEKRSAMGWSQLILKLEKLHPKKWVRDDLQKQV
DSIVLLAPEWCKKVELKSSRGGHAFRVVSESAFNACREKVSSTKHHDLSL
DQ*
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spliced messenger RNA

>Ggra3646.t3 ID=Ggra3646.t3|Name=Ggra3646.t3|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1059bp|location=Sequence derived from alignment at tig00000850_pilon:719671..720729- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCCCAAATCGTACGCTCTCGTGTTGGATACACTAATCGGCCTGGA
AACTGCTGTGTCTCTTCTCAAAGTTCGAAAGATGAGACCTACTGTCGGCG
AATTGCGCGATATTGTCGCCCGAACCACGCGCCGTGACTTTACTATCAAG
GTTCTCTCACAGCTCGCCCATATAGTTCCTGAAGCTGTCGCAGTTTTGCC
AGGTCCTAAGGTAACCGTGAACCCAAAGAGACCATCAGACAGTCTGATTG
TCAGACTTGATGAACCGGATGATGATCGCGACCGATCAGGAAATGCGAAG
AACAAGTGTGAACAGGATACTAAAAGCTCTCTTGGTGAAGGTTATGCGAG
GTTGAGGCGATCTTTGTTGCACAAACGCTTGCTTCAACGCGTCCGACAAC
ATCACGATAGCTTCCTTGAACGCATTTCGGAGACGCGGTATAAGAGCGAT
GTATGGCATCCAGAATTCGATTTGGAGAAAGAAGTAAGCGAGCTACCATC
TCCCCCTCTGTCTTTCGATGAAACCTCTCGTGCAGCGGTACGAACTGTCA
AGCGGGTACGGTTCAATCTCCCCGACGCTGATGAAACGAGGGACGATTTA
GACGAGAACGAAACAAGTCCTGATGAAGATGAAGATGACTTTGCAGATGG
GTGTATCTCTAAGACCCTTCTCGAACGAGTTCGTGCGCGATCGAAGTCTC
AAAGGGAGCAACAGTCGAAGCTGGTGGAAGAGAAGAAGACTAACGAATCG
CTTCTGTCCAAGCTGCCGAGTACAATGGACAGCATCTACATTGTGATGAG
AAATGAGAAGCGATCTGCCATGGGTTGGAGCCAGTTGATCCTCAAGTTGG
AGAAACTGCACCCCAAGAAGTGGGTCAGAGACGATCTGCAGAAACAAGTA
GATTCGATTGTTTTACTTGCACCGGAGTGGTGCAAGAAGGTGGAATTGAA
GAGCTCTCGCGGTGGCCATGCTTTCCGAGTAGTGTCTGAATCTGCCTTCA
ATGCCTGCCGAGAGAAAGTGTCTTCAACGAAGCACCATGACTTATCCCTG
GATCAATAA
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protein sequence of Ggra3646.t3

>Ggra3646.t3 ID=Ggra3646.t3|Name=Ggra3646.t3|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=353bp
MLPKSYALVLDTLIGLETAVSLLKVRKMRPTVGELRDIVARTTRRDFTIK
VLSQLAHIVPEAVAVLPGPKVTVNPKRPSDSLIVRLDEPDDDRDRSGNAK
NKCEQDTKSSLGEGYARLRRSLLHKRLLQRVRQHHDSFLERISETRYKSD
VWHPEFDLEKEVSELPSPPLSFDETSRAAVRTVKRVRFNLPDADETRDDL
DENETSPDEDEDDFADGCISKTLLERVRARSKSQREQQSKLVEEKKTNES
LLSKLPSTMDSIYIVMRNEKRSAMGWSQLILKLEKLHPKKWVRDDLQKQV
DSIVLLAPEWCKKVELKSSRGGHAFRVVSESAFNACREKVSSTKHHDLSL
DQ*
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mRNA from alignment at tig00000850_pilon:719671..720729-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3646.t3 ID=Ggra3646.t3|Name=Ggra3646.t3|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1059bp|location=Sequence derived from alignment at tig00000850_pilon:719671..720729- (Gracilaria gracilis GNS1m male)
ATGCTTCCCAAATCGTACGCTCTCGTGTTGGATACACTAATCGGCCTGGA
AACTGCTGTGTCTCTTCTCAAAGTTCGAAAGATGAGACCTACTGTCGGCG
AATTGCGCGATATTGTCGCCCGAACCACGCGCCGTGACTTTACTATCAAG
GTTCTCTCACAGCTCGCCCATATAGTTCCTGAAGCTGTCGCAGTTTTGCC
AGGTCCTAAGGTAACCGTGAACCCAAAGAGACCATCAGACAGTCTGATTG
TCAGACTTGATGAACCGGATGATGATCGCGACCGATCAGGAAATGCGAAG
AACAAGTGTGAACAGGATACTAAAAGCTCTCTTGGTGAAGGTTATGCGAG
GTTGAGGCGATCTTTGTTGCACAAACGCTTGCTTCAACGCGTCCGACAAC
ATCACGATAGCTTCCTTGAACGCATTTCGGAGACGCGGTATAAGAGCGAT
GTATGGCATCCAGAATTCGATTTGGAGAAAGAAGTAAGCGAGCTACCATC
TCCCCCTCTGTCTTTCGATGAAACCTCTCGTGCAGCGGTACGAACTGTCA
AGCGGGTACGGTTCAATCTCCCCGACGCTGATGAAACGAGGGACGATTTA
GACGAGAACGAAACAAGTCCTGATGAAGATGAAGATGACTTTGCAGATGG
GTGTATCTCTAAGACCCTTCTCGAACGAGTTCGTGCGCGATCGAAGTCTC
AAAGGGAGCAACAGTCGAAGCTGGTGGAAGAGAAGAAGACTAACGAATCG
CTTCTGTCCAAGCTGCCGAGTACAATGGACAGCATCTACATTGTGATGAG
AAATGAGAAGCGATCTGCCATGGGTTGGAGCCAGTTGATCCTCAAGTTGG
AGAAACTGCACCCCAAGAAGTGGGTCAGAGACGATCTGCAGAAACAAGTA
GATTCGATTGTTTTACTTGCACCGGAGTGGTGCAAGAAGGTGGAATTGAA
GAGCTCTCGCGGTGGCCATGCTTTCCGAGTAGTGTCTGAATCTGCCTTCA
ATGCCTGCCGAGAGAAAGTGTCTTCAACGAAGCACCATGACTTATCCCTG
GATCAATAA
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Coding sequence (CDS) from alignment at tig00000850_pilon:719671..720729-

>Ggra3646.t3 ID=Ggra3646.t3|Name=Ggra3646.t3|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1059bp|location=Sequence derived from alignment at tig00000850_pilon:719671..720729- (Gracilaria gracilis GNS1m male)
ATGCTTCCCAAATCGTACGCTCTCGTGTTGGATACACTAATCGGCCTGGA
AACTGCTGTGTCTCTTCTCAAAGTTCGAAAGATGAGACCTACTGTCGGCG
AATTGCGCGATATTGTCGCCCGAACCACGCGCCGTGACTTTACTATCAAG
GTTCTCTCACAGCTCGCCCATATAGTTCCTGAAGCTGTCGCAGTTTTGCC
AGGTCCTAAGGTAACCGTGAACCCAAAGAGACCATCAGACAGTCTGATTG
TCAGACTTGATGAACCGGATGATGATCGCGACCGATCAGGAAATGCGAAG
AACAAGTGTGAACAGGATACTAAAAGCTCTCTTGGTGAAGGTTATGCGAG
GTTGAGGCGATCTTTGTTGCACAAACGCTTGCTTCAACGCGTCCGACAAC
ATCACGATAGCTTCCTTGAACGCATTTCGGAGACGCGGTATAAGAGCGAT
GTATGGCATCCAGAATTCGATTTGGAGAAAGAAGTAAGCGAGCTACCATC
TCCCCCTCTGTCTTTCGATGAAACCTCTCGTGCAGCGGTACGAACTGTCA
AGCGGGTACGGTTCAATCTCCCCGACGCTGATGAAACGAGGGACGATTTA
GACGAGAACGAAACAAGTCCTGATGAAGATGAAGATGACTTTGCAGATGG
GTGTATCTCTAAGACCCTTCTCGAACGAGTTCGTGCGCGATCGAAGTCTC
AAAGGGAGCAACAGTCGAAGCTGGTGGAAGAGAAGAAGACTAACGAATCG
CTTCTGTCCAAGCTGCCGAGTACAATGGACAGCATCTACATTGTGATGAG
AAATGAGAAGCGATCTGCCATGGGTTGGAGCCAGTTGATCCTCAAGTTGG
AGAAACTGCACCCCAAGAAGTGGGTCAGAGACGATCTGCAGAAACAAGTA
GATTCGATTGTTTTACTTGCACCGGAGTGGTGCAAGAAGGTGGAATTGAA
GAGCTCTCGCGGTGGCCATGCTTTCCGAGTAGTGTCTGAATCTGCCTTCA
ATGCCTGCCGAGAGAAAGTGTCTTCAACGAAGCACCATGACTTATCCCTG
GATCAATAA
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