Ggra3415.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra3415.t1
Unique NameGgra3415.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length198
Homology
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BLAST of Ggra3415.t1 vs. uniprot
Match: A0A2V3IRV5 (Mediator of RNA polymerase II transcription subunit 11 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRV5_9FLOR)

HSP 1 Score: 271 bits (692), Expect = 5.240e-90
Identity = 142/197 (72.08%), Postives = 171/197 (86.80%), Query Frame = 0 
Query:    1 MVGQQQQPLTTAESLKRLNAAEQKVLNFLTQATEAVRALSQTEAPEVTSASVHAQQFIVNVHEVQAILRAQIESLTSDVPQENITMLRLVEADLALQRTAHVHRALAHILKLFGEPVSGVPTTAPSPAYMPSPVANTPVGLIGGMAPTPPAAGAPITIAVPSPDNKAASAQLSMQIGLNGGASEAAPDPQNADTMEI 197
            MVGQQQ+   TAESL++L  AEQKVL FL+QAT+AVRALS TE+P+VT+A+VHAQQ + N+++VQAILR QI++L+SD+P E+ T LRLVEADLALQRTAHVHR+L HILKLFGEP++G+PTTAPSP YMPSPVANTPVGL+GGMAPTPPAAGAPITIAVPSPD    + QLS+Q+GLNGGA+E   +P N D ME+
Sbjct:    1 MVGQQQRLPPTAESLQKLRVAEQKVLTFLSQATDAVRALSNTESPQVTTATVHAQQVVSNLYDVQAILRNQIDALSSDMPLEDGTKLRLVEADLALQRTAHVHRSLVHILKLFGEPITGMPTTAPSPPYMPSPVANTPVGLVGGMAPTPPAAGAPITIAVPSPDGTTGTNQLSVQMGLNGGAAEGTAEPPNPDAMEM 197
The following BLAST results are available for this feature:
BLAST of Ggra3415.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IRV55.240e-9072.08Mediator of RNA polymerase II transcription subuni... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019404Mediator complex, subunit Med11PFAMPF10280Med11coord: 12..77
e-value: 3.1E-6
score: 27.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000905_piloncontigtig00000905_pilon:266273..266866 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3415.t1Ggra3415.t1Gracilaria gracilis GNS1m malemRNAtig00000905_pilon 266273..266866 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra3415.t1 ID=Ggra3415.t1|Name=Ggra3415.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=198bp
MVGQQQQPLTTAESLKRLNAAEQKVLNFLTQATEAVRALSQTEAPEVTSA
SVHAQQFIVNVHEVQAILRAQIESLTSDVPQENITMLRLVEADLALQRTA
HVHRALAHILKLFGEPVSGVPTTAPSPAYMPSPVANTPVGLIGGMAPTPP
AAGAPITIAVPSPDNKAASAQLSMQIGLNGGASEAAPDPQNADTMEI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019404Mediator_Med11