Ggra3414.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra3414.t1
Unique NameGgra3414.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length230
Homology
BLAST of Ggra3414.t1 vs. uniprot
Match: A0A2V3IUN0 (Histone RNA hairpin-binding protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUN0_9FLOR)

HSP 1 Score: 249 bits (637), Expect = 9.190e-81
Identity = 130/222 (58.56%), Postives = 158/222 (71.17%), Query Frame = 0
Query:    1 MVTAPNSRKSQAPRSGFDQNNQRPLKRHRRWCDTVERFALANGIETDSHRLSQRQKQIDYGKNTLAYDRFIAACPREQRKKGDPMTPLIRQKCSKRSFMGQVTSWKKKVYAYVAELDKDVGQGNPPEIDDEFKLDGGAGARKVSETATCNTPSEGKCYATSTERSTDAVTDDGDVDLSDLDDIELDDQGNVISRNEGATPPESTAQDVDENDVEAPSIFTPY 222
            M +    R S   RS     NQRP KR RRWCD VE  ALANG+ETD HR+ QRQKQI+YGKNT+AYDRFIA CPRE+RK+GDPMTPL RQKCSKRSF+GQVTSWKKKVY+YVAE+DK+  +    ++DD FKLDGG+G R  SE A     +  +    S+  ST+ VTD+GD+D SDLDDIELDD GNVIS+ + A P  +  ++ ++ND     IF PY
Sbjct:    1 MASTQECRGSGLRRSAPAHPNQRPSKRLRRWCDFVEWCALANGLETDKHRIEQRQKQINYGKNTIAYDRFIAVCPREKRKRGDPMTPLARQKCSKRSFLGQVTSWKKKVYSYVAEMDKESDEEKVLDVDDGFKLDGGSGKRSGSEKACSEQSTAERDCVPSSGHSTEDVTDEGDIDFSDLDDIELDDHGNVISKEDDAAPA-ADKEETEDNDDSPALIFKPY 221          
BLAST of Ggra3414.t1 vs. uniprot
Match: A0A5J4YHX5 (Histone RNA hairpin-binding protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YHX5_PORPP)

HSP 1 Score: 104 bits (260), Expect = 1.590e-23
Identity = 72/177 (40.68%), Postives = 94/177 (53.11%), Query Frame = 0
Query:   18 DQNNQRPLKRHRR-WCDTVERFALANGIETDSHRLSQRQKQIDYGKNTLAYDRFIAACPREQRKKGDPMTPLIRQKCSKRSFMGQVTSWKKKVYAYVAELDKDVGQGNPPEIDDEFKLDGGAGARKVSETAT-CNTPSEGKCYATSTERSTDAVTDDGDVDLSDLDDIELDDQGNVI 192
            + + QRP  R +  W D V + AL NG ETD HRL QRQKQIDYGKNT AYD + A   R +R +GDPMTP  RQ CSKRS+  QV  W+  ++A+           +PP   +         A ++ +T   C+T  +    A   +        DG  D  D+DDI+LDD GN I
Sbjct:  123 ENDAQRPGGRFKMCWADFVTKRALENGEETDPHRLRQRQKQIDYGKNTRAYDEYCARKQRSERVQGDPMTPEKRQVCSKRSWAEQVKLWRVALHAF-----------DPPPAAEHCVQ-----AHELEQTLLRCSTSDQDARAAAGAQL-------DGS-DSDDMDDIQLDDDGNPI 275          
BLAST of Ggra3414.t1 vs. uniprot
Match: A0A1Y1HST1 (SLBP_RNA_bind domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HST1_KLENI)

HSP 1 Score: 96.3 bits (238), Expect = 3.390e-20
Identity = 50/113 (44.25%), Postives = 69/113 (61.06%), Query Frame = 0
Query:   45 ETDSHRLSQRQKQIDYGKNTLAYDRFIAACPREQRKKGDPMTPLIRQKCSKRSFMGQVTSWKKKVYAYVAELDKDVGQGNPPEIDDEFKLDG---GAGARKVSETATCNTPSE 154
            ETD+HRL+QRQKQID+GKNTL Y+R++   P+ +R+KGDP TP I Q CSKRS+ GQ+  W++ ++ Y   +D +       E  +E  + G    AG  K  ET     P E
Sbjct:  163 ETDAHRLAQRQKQIDFGKNTLGYERYLEVTPKAKRQKGDPTTPRIHQVCSKRSWDGQIKKWRRFLHRYDPPVDDEA------EFAEEEYVPGYRDNAGGVKEDETGAEGAPEE 269          
BLAST of Ggra3414.t1 vs. uniprot
Match: A0A7S1TE51 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TE51_9RHOD)

HSP 1 Score: 90.5 bits (223), Expect = 4.580e-19
Identity = 46/107 (42.99%), Postives = 60/107 (56.07%), Query Frame = 0
Query:   31 WCDTVERFALANGIETDSHRLSQRQKQIDYGKNTLAYDRFIAACPREQRKKGDPMTPLIRQKCSKRSFMGQVTSWKKKVYAYVAELDK--------DVGQGNPPEID 129
            W   + R AL NG E D HRL QR +QID+GKNTL Y R+    P E R + DP TP   QKCSKRS+ GQV  W+ +++ +    D+        D  +G   EI+
Sbjct:   25 WMMRLNRLALKNGREEDRHRLKQRTRQIDFGKNTLGYQRYRERVPLEARTREDPWTPRKEQKCSKRSWDGQVRKWRNQLHVFDPVEDRGDEEDGVGDTMEGGESEIE 131          
BLAST of Ggra3414.t1 vs. uniprot
Match: A8J2B6 (Histone gene transcript 5' hairpin-binding protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8J2B6_CHLRE)

HSP 1 Score: 89.0 bits (219), Expect = 1.460e-18
Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = 0
Query:   45 ETDSHRLSQRQKQIDYGKNTLAYDRFIAACPREQRKKGDPMTPLIRQKCSKRSFMGQVTSWKKKVYAYVAELDKDVGQG 123
            + D HRL+QRQKQIDYGKNTL Y R++   P+++R+KGDP TP +    SKR+F G +  W+++++ Y  + D+D G G
Sbjct:   52 DLDDHRLAQRQKQIDYGKNTLGYQRYLQLIPKDKRQKGDPQTPDMHLNNSKRAFEGLIKVWRRQLHKYDQDGDEDAGPG 130          
BLAST of Ggra3414.t1 vs. uniprot
Match: A0A388KFE1 (SLBP_RNA_bind domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KFE1_CHABU)

HSP 1 Score: 90.5 bits (223), Expect = 1.600e-18
Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 0
Query:   45 ETDSHRLSQRQKQIDYGKNTLAYDRFIAACPREQRKKGDPMTPLIRQKCSKRSFMGQVTSWKKKVYAYVAELD--KDV 120
            ETD HR+SQRQKQID+GKNTL Y R+    PR++RK+GDP TP   Q CSKRS+ GQV  W++ ++ Y    D  KDV
Sbjct:   54 ETDKHRISQRQKQIDFGKNTLGYGRYFELVPRKKRKRGDPQTPDPYQVCSKRSWDGQVRKWRRLLHEYDPPSDGEKDV 131          
BLAST of Ggra3414.t1 vs. uniprot
Match: A0A2K1JFW8 (SLBP_RNA_bind domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JFW8_PHYPA)

HSP 1 Score: 91.7 bits (226), Expect = 1.010e-17
Identity = 45/88 (51.14%), Postives = 57/88 (64.77%), Query Frame = 0
Query:   44 IETDSHRLSQRQKQIDYGKNTLAYDRFIAACPREQRKKGDPMTPLIRQKCSKRSFMGQVTSWKKKVYAYVAELDKDVGQGNPPEIDDE 131
            +E D HRL QRQKQIDYGKNTL Y+R+I   PR QR K  P TP IRQ CSKRS+ GQ+  W++ ++ Y           +PP+ +DE
Sbjct:  426 VELDPHRLCQRQKQIDYGKNTLGYERYIELVPRYQRTKAHPRTPDIRQVCSKRSWDGQIRKWRRLLHEY-----------DPPKGEDE 502          
BLAST of Ggra3414.t1 vs. uniprot
Match: E1ZHQ3 (SLBP_RNA_bind domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZHQ3_CHLVA)

HSP 1 Score: 91.3 bits (225), Expect = 1.620e-17
Identity = 51/106 (48.11%), Postives = 67/106 (63.21%), Query Frame = 0
Query:   45 ETDSHRLSQRQKQIDYGKNTLAYDRFIAACPREQR-KKGDPMTPLIRQKCSKRSFMGQVTSWKKKVYAY----------VAELDKDVG--QGNPP----EIDDEFK 133
            ETD HRL+QRQKQ+D GKNTL Y R+  A PRE+R KK DPMTP + Q CSKR+F GQV  W+++++A+          +  +  DVG    NPP    E  D+F+
Sbjct:  600 ETDPHRLAQRQKQLDLGKNTLGYQRYRQAVPRERRNKKTDPMTPDVYQMCSKRAFEGQVKKWRRQLHAWDPPEDGGEPALLPVHSDVGGLASNPPPPAGEPSDDFE 705          
BLAST of Ggra3414.t1 vs. uniprot
Match: D7FLR7 (Histone hairpin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLR7_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 2.360e-17
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = 0
Query:   36 ERFALANGIETDSHRLSQRQKQIDYGKNTLAYDRFIAACPREQRKKGDPMTPLIRQKCSKRSFMGQVTSWKKKVYAYVAEL 116
            E    A+  E D HR++QRQKQID+GKNT  YDR++AA PR +R +GDP TP   +K SKR + GQ+ SW+++++ Y  E+
Sbjct:  909 EALKFASDREEDPHRIAQRQKQIDFGKNTSGYDRYLAAVPRNKRSRGDPKTPNKEKKMSKRRWDGQIRSWRRQLHEYDVEV 989          
BLAST of Ggra3414.t1 vs. uniprot
Match: A0A2K1JXB1 (SLBP_RNA_bind domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JXB1_PHYPA)

HSP 1 Score: 90.5 bits (223), Expect = 2.540e-17
Identity = 45/92 (48.91%), Postives = 58/92 (63.04%), Query Frame = 0
Query:   44 IETDSHRLSQRQKQIDYGKNTLAYDRFIAACPREQRKKGDPMTPLIRQKCSKRSFMGQVTSWKKKVYAYVAELDKDVGQGNPPEIDDEFKLD 135
            +E D HRL QRQKQIDYGKNTL Y+R+I   PR +R K  P TP IRQ CSKRS+ GQ+  W++ ++ Y           +PP+ +DE   D
Sbjct:  426 VEMDPHRLCQRQKQIDYGKNTLGYERYIEMVPRYKRTKSHPRTPDIRQVCSKRSWDGQIRKWRRLLHEY-----------DPPKGEDEEDSD 506          
The following BLAST results are available for this feature:
BLAST of Ggra3414.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IUN09.190e-8158.56Histone RNA hairpin-binding protein n=1 Tax=Gracil... [more]
A0A5J4YHX51.590e-2340.68Histone RNA hairpin-binding protein n=1 Tax=Porphy... [more]
A0A1Y1HST13.390e-2044.25SLBP_RNA_bind domain-containing protein n=1 Tax=Kl... [more]
A0A7S1TE514.580e-1942.99Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A8J2B61.460e-1848.10Histone gene transcript 5' hairpin-binding protein... [more]
A0A388KFE11.600e-1856.41SLBP_RNA_bind domain-containing protein n=1 Tax=Ch... [more]
A0A2K1JFW81.010e-1751.14SLBP_RNA_bind domain-containing protein n=2 Tax=Ph... [more]
E1ZHQ31.620e-1748.11SLBP_RNA_bind domain-containing protein n=1 Tax=Ch... [more]
D7FLR72.360e-1749.38Histone hairpin binding protein n=1 Tax=Ectocarpus... [more]
A0A2K1JXB12.540e-1748.91SLBP_RNA_bind domain-containing protein n=2 Tax=Ph... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038294SLBP, RNA-binding domain superfamilyGENE3D1.10.8.1120coord: 41..113
e-value: 3.8E-26
score: 93.0
IPR029344Histone RNA hairpin-binding protein, RNA-binding domainPFAMPF15247SLBP_RNA_bindcoord: 46..112
e-value: 2.5E-25
score: 88.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 162..229
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 192..206
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 172..186
IPR026502Histone RNA stem-loop-binding protein SLBP1/SLBP2PANTHERPTHR17408HISTONE RNA HAIRPIN-BINDING PROTEINcoord: 25..183

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000905_piloncontigtig00000905_pilon:265308..265997 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3414.t1Ggra3414.t1Gracilaria gracilis GNS1m malemRNAtig00000905_pilon 265308..265997 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra3414.t1 ID=Ggra3414.t1|Name=Ggra3414.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=230bp
MVTAPNSRKSQAPRSGFDQNNQRPLKRHRRWCDTVERFALANGIETDSHR
LSQRQKQIDYGKNTLAYDRFIAACPREQRKKGDPMTPLIRQKCSKRSFMG
QVTSWKKKVYAYVAELDKDVGQGNPPEIDDEFKLDGGAGARKVSETATCN
TPSEGKCYATSTERSTDAVTDDGDVDLSDLDDIELDDQGNVISRNEGATP
PESTAQDVDENDVEAPSIFTPYELESWAT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038294SLBP_RNA_bind_sf
IPR029344SLBP_RNA_bind
IPR026502SLBP1/SLBP2