Ggra3414.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3414.t1
Unique NameGgra3414.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length230
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000905_piloncontigtig00000905_pilon:265308..265997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S435_5V6.1
PFAMsSLBP_RNA_bind
Max annot lvl33090|Viridiplantae
KEGG koko:K18710
Evalue1.49e-17
EggNOG OGsKOG3934@1|root,KOG3934@2759|Eukaryota,37X2K@33090|Viridiplantae
DescriptionHistone RNA hairpin-binding protein RNA-binding domain
COG categoryA
BRITEko00000,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3414Ggra3414Gracilaria gracilis GNS1m malegenetig00000905_pilon 265308..265997 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3414.t1.start1Ggra3414.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000905_pilon 265308..265310 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3414.t1.CDS1Ggra3414.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000905_pilon 265308..265997 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3414.t1.exon1Ggra3414.t1.exon1Gracilaria gracilis GNS1m maleexontig00000905_pilon 265308..265997 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3414.t1.stop1Ggra3414.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000905_pilon 265995..265997 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3414.t1Ggra3414.t1Gracilaria gracilis GNS1m malepolypeptidetig00000905_pilon 265308..265997 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3414.t1 ID=Ggra3414.t1|Name=Ggra3414.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=230bp
MVTAPNSRKSQAPRSGFDQNNQRPLKRHRRWCDTVERFALANGIETDSHR
LSQRQKQIDYGKNTLAYDRFIAACPREQRKKGDPMTPLIRQKCSKRSFMG
QVTSWKKKVYAYVAELDKDVGQGNPPEIDDEFKLDGGAGARKVSETATCN
TPSEGKCYATSTERSTDAVTDDGDVDLSDLDDIELDDQGNVISRNEGATP
PESTAQDVDENDVEAPSIFTPYELESWAT*
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spliced messenger RNA

>Ggra3414.t1 ID=Ggra3414.t1|Name=Ggra3414.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=690bp|location=Sequence derived from alignment at tig00000905_pilon:265308..265997+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTACCGCTCCCAACTCCCGCAAGTCACAGGCGCCACGCTCTGGGTT
TGACCAGAATAACCAGCGCCCCCTAAAACGGCATCGTCGCTGGTGTGACA
CAGTTGAACGCTTCGCTCTCGCAAATGGAATTGAGACCGACAGCCATCGT
TTGTCGCAGCGCCAGAAGCAGATTGACTACGGGAAAAATACGCTCGCATA
CGACCGTTTTATCGCCGCTTGCCCTCGTGAACAGCGCAAGAAAGGGGATC
CGATGACACCTTTGATACGTCAAAAATGCTCAAAGCGATCGTTTATGGGA
CAAGTAACTTCTTGGAAGAAGAAAGTCTATGCATACGTGGCTGAGCTAGA
CAAGGACGTCGGCCAAGGAAACCCACCAGAAATTGACGATGAGTTCAAAC
TGGACGGTGGCGCGGGGGCACGAAAAGTGTCAGAAACAGCAACCTGCAAC
ACTCCATCAGAAGGGAAGTGCTATGCTACGTCAACTGAACGGTCAACAGA
CGCGGTTACGGACGATGGTGATGTTGACTTGAGCGATCTTGATGACATTG
AGCTAGATGACCAAGGGAACGTCATTTCACGAAATGAAGGAGCCACTCCG
CCTGAGTCCACTGCACAGGATGTCGACGAGAACGACGTCGAAGCTCCTTC
CATTTTCACACCTTATGAATTGGAATCATGGGCGACTTAA
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protein sequence of Ggra3414.t1

>Ggra3414.t1 ID=Ggra3414.t1|Name=Ggra3414.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=230bp
MVTAPNSRKSQAPRSGFDQNNQRPLKRHRRWCDTVERFALANGIETDSHR
LSQRQKQIDYGKNTLAYDRFIAACPREQRKKGDPMTPLIRQKCSKRSFMG
QVTSWKKKVYAYVAELDKDVGQGNPPEIDDEFKLDGGAGARKVSETATCN
TPSEGKCYATSTERSTDAVTDDGDVDLSDLDDIELDDQGNVISRNEGATP
PESTAQDVDENDVEAPSIFTPYELESWAT*
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mRNA from alignment at tig00000905_pilon:265308..265997+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3414.t1 ID=Ggra3414.t1|Name=Ggra3414.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=690bp|location=Sequence derived from alignment at tig00000905_pilon:265308..265997+ (Gracilaria gracilis GNS1m male)
ATGGTTACCGCTCCCAACTCCCGCAAGTCACAGGCGCCACGCTCTGGGTT
TGACCAGAATAACCAGCGCCCCCTAAAACGGCATCGTCGCTGGTGTGACA
CAGTTGAACGCTTCGCTCTCGCAAATGGAATTGAGACCGACAGCCATCGT
TTGTCGCAGCGCCAGAAGCAGATTGACTACGGGAAAAATACGCTCGCATA
CGACCGTTTTATCGCCGCTTGCCCTCGTGAACAGCGCAAGAAAGGGGATC
CGATGACACCTTTGATACGTCAAAAATGCTCAAAGCGATCGTTTATGGGA
CAAGTAACTTCTTGGAAGAAGAAAGTCTATGCATACGTGGCTGAGCTAGA
CAAGGACGTCGGCCAAGGAAACCCACCAGAAATTGACGATGAGTTCAAAC
TGGACGGTGGCGCGGGGGCACGAAAAGTGTCAGAAACAGCAACCTGCAAC
ACTCCATCAGAAGGGAAGTGCTATGCTACGTCAACTGAACGGTCAACAGA
CGCGGTTACGGACGATGGTGATGTTGACTTGAGCGATCTTGATGACATTG
AGCTAGATGACCAAGGGAACGTCATTTCACGAAATGAAGGAGCCACTCCG
CCTGAGTCCACTGCACAGGATGTCGACGAGAACGACGTCGAAGCTCCTTC
CATTTTCACACCTTATGAATTGGAATCATGGGCGACTTAA
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Coding sequence (CDS) from alignment at tig00000905_pilon:265308..265997+

>Ggra3414.t1 ID=Ggra3414.t1|Name=Ggra3414.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=690bp|location=Sequence derived from alignment at tig00000905_pilon:265308..265997+ (Gracilaria gracilis GNS1m male)
ATGGTTACCGCTCCCAACTCCCGCAAGTCACAGGCGCCACGCTCTGGGTT
TGACCAGAATAACCAGCGCCCCCTAAAACGGCATCGTCGCTGGTGTGACA
CAGTTGAACGCTTCGCTCTCGCAAATGGAATTGAGACCGACAGCCATCGT
TTGTCGCAGCGCCAGAAGCAGATTGACTACGGGAAAAATACGCTCGCATA
CGACCGTTTTATCGCCGCTTGCCCTCGTGAACAGCGCAAGAAAGGGGATC
CGATGACACCTTTGATACGTCAAAAATGCTCAAAGCGATCGTTTATGGGA
CAAGTAACTTCTTGGAAGAAGAAAGTCTATGCATACGTGGCTGAGCTAGA
CAAGGACGTCGGCCAAGGAAACCCACCAGAAATTGACGATGAGTTCAAAC
TGGACGGTGGCGCGGGGGCACGAAAAGTGTCAGAAACAGCAACCTGCAAC
ACTCCATCAGAAGGGAAGTGCTATGCTACGTCAACTGAACGGTCAACAGA
CGCGGTTACGGACGATGGTGATGTTGACTTGAGCGATCTTGATGACATTG
AGCTAGATGACCAAGGGAACGTCATTTCACGAAATGAAGGAGCCACTCCG
CCTGAGTCCACTGCACAGGATGTCGACGAGAACGACGTCGAAGCTCCTTC
CATTTTCACACCTTATGAATTGGAATCATGGGCGACTTAA
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