Ggra3401.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra3401.t1
Unique NameGgra3401.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length149
Homology
BLAST of Ggra3401.t1 vs. uniprot
Match: A0A2V3IFP8 (Histone deacetylase complex subunit SAP30 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFP8_9FLOR)

HSP 1 Score: 122 bits (307), Expect = 6.550e-33
Identity = 72/92 (78.26%), Postives = 79/92 (85.87%), Query Frame = 0
Query:    1 MTVSKRSA-KLPHK--REHKLALATTCVDLSKLRKASLKRYKKHFKLDVKADSKTELVEAVRRHFAQMPVRELDVAREFHSLWRLRAGRRVA 89
            MT SKR+A KL  K   + KL+L T  VDLSKLRKASLKRYKKHFKLDVKADSK+EL+EAV RHFAQMPVRE+DVAR+FHS WRLRAGRRVA
Sbjct:    1 MTASKRAAAKLAAKPLSDSKLSLKTY-VDLSKLRKASLKRYKKHFKLDVKADSKSELLEAVGRHFAQMPVREVDVARDFHSFWRLRAGRRVA 91          
BLAST of Ggra3401.t1 vs. uniprot
Match: A0A1X6NX01 (SAP30_Sin3_bdg domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NX01_PORUM)

HSP 1 Score: 70.5 bits (171), Expect = 4.380e-13
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 0
Query:   25 VDLSKLRKASLKRYKKHFKLDVKADSKTELVEAVRRHFAQMPVRELDVAREFHSLWRLRAGRRVAAHAS 93
            VDLSKL K SLKRY  HF ++ + ++K EL++ V  HFAQMPV+EL VAR+FH+  R   G+RV    S
Sbjct:   25 VDLSKLHKNSLKRYLTHFGIEARGNTKVELLKIVTVHFAQMPVQELAVARDFHNFTRSDRGKRVLEKGS 93          
BLAST of Ggra3401.t1 vs. uniprot
Match: A0A5J4YN18 (SAP30_Sin3_bdg domain-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YN18_PORPP)

HSP 1 Score: 62.4 bits (150), Expect = 1.300e-9
Identity = 38/78 (48.72%), Postives = 49/78 (62.82%), Query Frame = 0
Query:   20 LATTCVDLSKLRKASLKRYKKHFKLDVKAD--SKTELVEAVRRHFAQMPVRELDVAREFHSLWRLRAGRRVAAHASTL 95
            +A TC+DLS+LRK+SLKRYK+HFK+ +     SK ELV AV  HFA+M V E +V   F  L R  A       ++TL
Sbjct:   10 VAPTCIDLSRLRKSSLKRYKRHFKISMSVSNPSKAELVAAVSSHFAEMRVLEHEV---FDELARFFAAEHQKLQSATL 84          
The following BLAST results are available for this feature:
BLAST of Ggra3401.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IFP86.550e-3378.26Histone deacetylase complex subunit SAP30 n=1 Tax=... [more]
A0A1X6NX014.380e-1353.62SAP30_Sin3_bdg domain-containing protein n=1 Tax=P... [more]
A0A5J4YN181.300e-948.72SAP30_Sin3_bdg domain-containing protein n=1 Tax=P... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025718Histone deacetylase complex subunit SAP30, Sin3 binding domainPFAMPF13867SAP30_Sin3_bdgcoord: 30..76
e-value: 5.9E-14
score: 52.1
IPR038291SAP30, C-terminal domain superfamilyGENE3D6.10.160.20coord: 5..91
e-value: 2.3E-17
score: 64.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..148
NoneNo IPR availablePANTHERPTHR13286:SF6HISTONE DEACETYLASE COMPLEX SUBUNIT SAP30Lcoord: 24..78
IPR024145Histone deacetylase complex subunit SAP30/SAP30-likePANTHERPTHR13286SAP30coord: 24..78

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000905_piloncontigtig00000905_pilon:143320..143843 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3401.t1Ggra3401.t1Gracilaria gracilis GNS1m malemRNAtig00000905_pilon 143320..143843 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra3401.t1 ID=Ggra3401.t1|Name=Ggra3401.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=149bp
MTVSKRSAKLPHKREHKLALATTCVDLSKLRKASLKRYKKHFKLDVKADS
KTELVEAVRRHFAQMPVRELDVAREFHSLWRLRAGRRVAAHASTLAAAAA
VVAAPQSADAAAAAAAAAAPAAAAAAAAAAAPPPQRAAATGVETAGGR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025718SAP30_Sin3-bd
IPR038291SAP30_C_sf
IPR024145His_deAcase_SAP30/SAP30L