Ggra3401.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3401.t1
Unique NameGgra3401.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length149
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000905_piloncontigtig00000905_pilon:143320..143843 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog34740.HMEL007341-PA
Preferred nameSAP30L
PFAMsSAP30_Sin3_bdg,zf-SAP30
Max annot lvl33208|Metazoa
KEGG koko:K19202
GOsGO:0000118,GO:0000122,GO:0001947,GO:0002009,GO:0003007,GO:0003143,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003712,GO:0003824,GO:0004407,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006476,GO:0006807,GO:0006996,GO:0007275,GO:0007346,GO:0007368,GO:0007389,GO:0007507,GO:0008150,GO:0008152,GO:0008270,GO:0008289,GO:0008301,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010314,GO:0010389,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0016043,GO:0016569,GO:0016570,GO:0016575,GO:0016787,GO:0016810,GO:0016811,GO:0019213,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031491,GO:0031974,GO:0031981,GO:0032266,GO:0032501,GO:0032502,GO:0032991,GO:0033558,GO:0035050,GO:0035091,GO:0035239,GO:0035295,GO:0035601,GO:0036211,GO:0042393,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044378,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045892,GO:0045934,GO:0046872,GO:0046914,GO:0048513,GO:0048519,GO:0048523,GO:0048562,GO:0048568,GO:0048598,GO:0048729,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051726,GO:0060255,GO:0060429,GO:0060562,GO:0061371,GO:0065007,GO:0070013,GO:0070273,GO:0071704,GO:0071840,GO:0072359,GO:0080090,GO:0097159,GO:0098732,GO:0140096,GO:0140110,GO:1901363,GO:1901564,GO:1901981,GO:1901987,GO:1901990,GO:1902494,GO:1902679,GO:1902749,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Evalue0.000721
EggNOG OGs28PSY@1|root,2QWFH@2759|Eukaryota,397VJ@33154|Opisthokonta,3BDU3@33208|Metazoa,3CWA2@33213|Bilateria,41VKJ@6656|Arthropoda,3SJDJ@50557|Insecta,444M3@7088|Lepidoptera
DescriptionSAP30 zinc-finger
COG categoryK
BRITEko00000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3401Ggra3401Gracilaria gracilis GNS1m malegenetig00000905_pilon 143320..143843 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3401.t1Ggra3401.t1Gracilaria gracilis GNS1m malepolypeptidetig00000905_pilon 143320..143843 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3401.t1.start1Ggra3401.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000905_pilon 143320..143322 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3401.t1.CDS1Ggra3401.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000905_pilon 143320..143388 +
Ggra3401.t1.CDS2Ggra3401.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000905_pilon 143466..143843 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3401.t1.exon1Ggra3401.t1.exon1Gracilaria gracilis GNS1m maleexontig00000905_pilon 143320..143388 +
Ggra3401.t1.exon2Ggra3401.t1.exon2Gracilaria gracilis GNS1m maleexontig00000905_pilon 143466..143843 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3401.t1.intron1Ggra3401.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000905_pilon 143389..143465 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3401.t1.stop1Ggra3401.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000905_pilon 143841..143843 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3401.t1 ID=Ggra3401.t1|Name=Ggra3401.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=149bp
MTVSKRSAKLPHKREHKLALATTCVDLSKLRKASLKRYKKHFKLDVKADS
KTELVEAVRRHFAQMPVRELDVAREFHSLWRLRAGRRVAAHASTLAAAAA
VVAAPQSADAAAAAAAAAAPAAAAAAAAAAAPPPQRAAATGVETAGGR*
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spliced messenger RNA

>Ggra3401.t1 ID=Ggra3401.t1|Name=Ggra3401.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=447bp|location=Sequence derived from alignment at tig00000905_pilon:143320..143843+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGTGTCCAAGAGAAGCGCCAAGCTGCCGCACAAGCGCGAGCACAA
GCTCGCGCTCGCCACAACCTGCGTCGATCTGTCCAAGCTGCGCAAGGCGT
CGCTCAAGCGCTACAAGAAGCACTTCAAACTGGACGTCAAGGCCGACTCC
AAGACCGAGTTGGTGGAGGCCGTGCGTCGCCACTTTGCGCAAATGCCCGT
ACGGGAGCTGGACGTTGCGCGCGAGTTCCACTCGCTGTGGCGACTTCGTG
CCGGCCGTCGCGTGGCCGCGCACGcctccaccttggccgccgccgccgcc
gtcgtcgccgcgccgcagtctgccgacgccgccgccgctgctgccgccgc
tgctgcGCcggctgcggctgcggctgcggctgcggctgcggcGCCGCCGC
CGCAGCGCGCTGCCGCTACGGGTGTGGAGACGGCCGGCGGACGGTAG
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protein sequence of Ggra3401.t1

>Ggra3401.t1 ID=Ggra3401.t1|Name=Ggra3401.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=149bp
MTVSKRSAKLPHKREHKLALATTCVDLSKLRKASLKRYKKHFKLDVKADS
KTELVEAVRRHFAQMPVRELDVAREFHSLWRLRAGRRVAAHASTLAAAAA
VVAAPQSADAAAAAAAAAAPAAAAAAAAAAAPPPQRAAATGVETAGGR*
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mRNA from alignment at tig00000905_pilon:143320..143843+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3401.t1 ID=Ggra3401.t1|Name=Ggra3401.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=524bp|location=Sequence derived from alignment at tig00000905_pilon:143320..143843+ (Gracilaria gracilis GNS1m male)
ATGACGGTGTCCAAGAGAAGCGCCAAGCTGCCGCACAAGCGCGAGCACAA
GCTCGCGCTCGCCACAACCGTAAGTCCACCCACACACGCACACGCCGCCT
CGAGACACGCAGCCACTAACCTCCGCGCCGCCCCTCCACGCTGCAGTGCG
TCGATCTGTCCAAGCTGCGCAAGGCGTCGCTCAAGCGCTACAAGAAGCAC
TTCAAACTGGACGTCAAGGCCGACTCCAAGACCGAGTTGGTGGAGGCCGT
GCGTCGCCACTTTGCGCAAATGCCCGTACGGGAGCTGGACGTTGCGCGCG
AGTTCCACTCGCTGTGGCGACTTCGTGCCGGCCGTCGCGTGGCCGCGCAC
Gcctccaccttggccgccgccgccgccgtcgtcgccgcgccgcagtctgc
cgacgccgccgccgctgctgccgccgctgctgcGCcggctgcggctgcgg
ctgcggctgcggctgcggcGCCGCCGCCGCAGCGCGCTGCCGCTACGGGT
GTGGAGACGGCCGGCGGACGGTAG
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Coding sequence (CDS) from alignment at tig00000905_pilon:143320..143843+

>Ggra3401.t1 ID=Ggra3401.t1|Name=Ggra3401.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=447bp|location=Sequence derived from alignment at tig00000905_pilon:143320..143843+ (Gracilaria gracilis GNS1m male)
ATGACGGTGTCCAAGAGAAGCGCCAAGCTGCCGCACAAGCGCGAGCACAA
GCTCGCGCTCGCCACAACCTGCGTCGATCTGTCCAAGCTGCGCAAGGCGT
CGCTCAAGCGCTACAAGAAGCACTTCAAACTGGACGTCAAGGCCGACTCC
AAGACCGAGTTGGTGGAGGCCGTGCGTCGCCACTTTGCGCAAATGCCCGT
ACGGGAGCTGGACGTTGCGCGCGAGTTCCACTCGCTGTGGCGACTTCGTG
CCGGCCGTCGCGTGGCCGCGCACGcctccaccttggccgccgccgccgcc
gtcgtcgccgcgccgcagtctgccgacgccgccgccgctgctgccgccgc
tgctgcGCcggctgcggctgcggctgcggctgcggctgcggcGCCGCCGC
CGCAGCGCGCTGCCGCTACGGGTGTGGAGACGGCCGGCGGACGGTAG
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