Ggra3389.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra3389.t1
Unique NameGgra3389.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length264
Homology
BLAST of Ggra3389.t1 vs. uniprot
Match: A0A2V3IMW0 (Ferredoxin-1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMW0_9FLOR)

HSP 1 Score: 314 bits (804), Expect = 1.370e-104
Identity = 162/254 (63.78%), Postives = 190/254 (74.80%), Query Frame = 0
Query:   10 LAVRGSAQPLPPLRRTNPLLSSVRNVSPVKRARVPNACASTEEESSPEDVGLKRQQDYLKLLREVTEAETALSNPLGTKMSHEIIKFAEDGEAVLDRYVYVEEQDCIGCTHCTTTASSTFFLENTFGRARVFNQLGDSQELVAEAIDTCPVNCIYYVDWEDLVTLEQSRKDQTINNWSRLVGGQDSGSSKKGRRKTKVMDSGIMRCEDCPGRGCRTCPLYGVGHNPEYLRKKAMREAKXXXXXXXXXXXARRRL 263
            LA+  SA+ L       PL  + R  S   R  +P A A  EE  S  DV  KR++DY + L +VTEAETALSNP GTKMSHE+I+F   G   LDRYVYVEE+DCIGCTHC TTA  TFFLE+ FGRARV+NQLGD+ + +AEAIDTCPVNCIYYVDWEDLV LE  RKDQ INNW+RLVGGQD+ +++KG+RKTKVMDSG+MRCEDCPGRGCR   LYGVG NPEYL++KAMRE +     XXX   +R+RL
Sbjct:   38 LALNNSARVLTV--SLTPLKPTQRRWSSTVRT-IPCAAARYEETPSDYDVLEKRKEDYFRALEQVTEAETALSNPHGTKMSHEMIQFDASGLGPLDRYVYVEERDCIGCTHCATTAPGTFFLEDAFGRARVYNQLGDTDDTIAEAIDTCPVNCIYYVDWEDLVKLELMRKDQKINNWARLVGGQDAMNARKGKRKTKVMDSGVMRCEDCPGRGCRXXXLYGVGENPEYLKRKAMREVQKRQKKXXXRKRSRKRL 288          
BLAST of Ggra3389.t1 vs. uniprot
Match: R7QAW0 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QAW0_CHOCR)

HSP 1 Score: 269 bits (687), Expect = 1.320e-86
Identity = 124/183 (67.76%), Postives = 144/183 (78.69%), Query Frame = 0
Query:   65 QDYLKLLREVTEAETALSNPLGTKMSHEIIKFAEDGEAVLDRYVYVEEQDCIGCTHCTTTASSTFFLENTFGRARVFNQLGDSQELVAEAIDTCPVNCIYYVDWEDLVTLEQSRKDQTINNWSRLVGGQDSGSSKKGRRKTKVMDSGIMRCEDCPGRGCRTCPLYGVGHNPEYLRKKAMREAK 247
            ++Y + LRE+T+A+T LSNPLG K S EI++  EDG    DRYVYVEE+DCIGCTHC TTA+ TFF+E+ +GRARVFNQ GD++  V  AI TCPVNCIYYVDW DLV LE  R DQ INN +RLVGG D   S+KG  KTKVMDSGIMRCEDCPGRGC  CPL+GVG NPEYL+ K MR+AK
Sbjct:  108 EEYFERLREITQADTTLSNPLGLKKSFEIVELDEDGMGPRDRYVYVEERDCIGCTHCATTATGTFFMESEWGRARVFNQSGDTEGDVEVAIGTCPVNCIYYVDWNDLVALENMRDDQVINNTARLVGGSDPSGSRKGTTKTKVMDSGIMRCEDCPGRGCPQCPLFGVGENPEYLKMKKMRDAK 290          
BLAST of Ggra3389.t1 vs. uniprot
Match: A0A5J4Z9X2 (Ferredoxin-1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z9X2_PORPP)

HSP 1 Score: 224 bits (571), Expect = 1.160e-67
Identity = 106/183 (57.92%), Postives = 131/183 (71.58%), Query Frame = 0
Query:   65 QDYLKLLREVTEAETALSNPLGTKMSHEIIKFAEDGEAVLDRYVYVEEQDCIGCTHCTTTASSTFFLENTFGRARVFNQLGDSQELVAEAIDTCPVNCIYYVDWEDLVTLEQSRKDQTINNWSRLVGGQDSGSSKKGRRKTKVMDSGIMRCEDCPGRGCRTCPLYGVGHNPEYLRKKAMREAK 247
            + + + L+      +   N LG + SH+ +KF  +G A  DR+VYV+E DCIGC+HC  TA +TFFLE   GRAR F Q GD +ELV+EAIDTCPVNCIYYVDW+DLVTLE+ R  Q INN +RLVGG D  ++ + + K  VM SG +RCE+CPGRGC  CPLYGVG NPEY+RKK  REAK
Sbjct:  222 EQFFEFLQSDHSTRSLSRNALGAEPSHKYVKFDANGVASRDRFVYVDEVDCIGCSHCAMTARNTFFLEPDHGRARAFRQDGDPEELVSEAIDTCPVNCIYYVDWDDLVTLEKERVGQRINNAARLVGGSDL-TNARAQSKASVMTSGKVRCENCPGRGCADCPLYGVGENPEYMRKKETREAK 403          
BLAST of Ggra3389.t1 vs. uniprot
Match: A0A1X6NSU8 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NSU8_PORUM)

HSP 1 Score: 196 bits (498), Expect = 6.460e-60
Identity = 89/143 (62.24%), Postives = 106/143 (74.13%), Query Frame = 0
Query:  105 DRYVYVEEQDCIGCTHCTTTASSTFFLENTFGRARVFNQLGDSQELVAEAIDTCPVNCIYYVDWEDLVTLEQSRKDQTINNWSRLVGGQDSGSSKKGRRKTKVMDSGIMRCEDCPGRGCRTCPLYGVGHNPEYLRKKAMREAK 247
            DR+VYV+E DCIGCTHC  TA  TFF+++ +GRAR F Q GD  E VAEAIDTCPVNCIYYV ++DLVTLE+ R+ Q INN +RLVGG       +G  +  VM +G +RCEDCPGRGC  CPLYGVG NPEYLRK   R ++
Sbjct:    6 DRFVYVDEVDCIGCTHCAATARHTFFIDDEWGRARAFRQDGDDPETVAEAIDTCPVNCIYYVSFDDLVTLEREREGQIINNAARLVGGDGVSEGPRGTSEADVMRTGGIRCEDCPGRGCAECPLYGVGRNPEYLRKVEARASR 148          
BLAST of Ggra3389.t1 vs. uniprot
Match: A0A7S0MWU0 (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MWU0_9CRYP)

HSP 1 Score: 187 bits (474), Expect = 1.460e-55
Identity = 92/183 (50.27%), Postives = 118/183 (64.48%), Query Frame = 0
Query:   78 ETALSNPLGTKMSHEIIKFAEDGEAVLDRYVYVEEQDCIGCTHCTTTASSTFFLENTFGRARVFNQLGDSQELVAEAIDTCPVNCIYYVDWEDLVTLEQSRKDQTINNWSRLVGG----------QDSGSSKKGR---RKTKVMDSGIMRCEDCPGRGCRTCPLYGVGHNPEYLRKKAMREAK 247
            E    N    + SH  ++F  DG    DR+VYV+EQ CIGCT+C T A +TF++    GRAR F Q GD+ E+V  A+DTCPV+CI+YV W+DLV LE+ RK Q IN   RLVGG          +  G SK G+    K  +M +G MRC +CPG+GC++CPLYGVG NPEYLR+K  REA+
Sbjct:   31 ERLFDNADAERDSHTTVRFDSDGYPDRDRFVYVDEQTCIGCTNCATVARNTFYMNPEHGRARSFRQDGDADEVVRIAVDTCPVDCIWYVSWDDLVVLEKERKGQFINPAHRLVGGNFIESSEQMYRMRGLSKDGKGTDSKASIMVNGGMRCNNCPGKGCKSCPLYGVGQNPEYLRRKQAREAR 213          
BLAST of Ggra3389.t1 vs. uniprot
Match: A0A7S3WR17 (Hypothetical protein (Fragment) n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WR17_EMIHU)

HSP 1 Score: 183 bits (465), Expect = 6.650e-54
Identity = 92/176 (52.27%), Postives = 116/176 (65.91%), Query Frame = 0
Query:   72 REVTEAETALSNPLGTKMSHEIIKFAEDGEAVLDRYVYVEEQDCIGCTHCTTTASSTFFLENTFGRARVFNQLGDSQELVAEAIDTCPVNCIYYVDWEDLVTLEQSRKDQTINNWSRLVGGQDSGSSKKGRRKTKVMDSGIMRCEDCPGRGCRTCPLYGVGHNPEYLRKKAMREAK 247
            RE   A TA       + SH  ++  EDGE +  R+ YV+E  CIGCT+C TTA  TFF+E   GRARVF+Q GDS ELV EAID+CPV+CI+YV  EDLV LE+ R+ Q INN  RL   Q+ G++     + K   SG MRC +CPGRGC  CP++GVG NP YL +KA+RE +
Sbjct:   42 RETPTANTA-------EASHLHLELDEDGEPLQARFTYVDEHSCIGCTYCATTARGTFFMEEDHGRARVFDQAGDSDELVQEAIDSCPVSCIHYVSHEDLVILEKEREGQQINNAQRLRSQQE-GTAAVPPTQAKSFSSGAMRCTNCPGRGCADCPMFGVGENPVYLDRKAVREER 209          
BLAST of Ggra3389.t1 vs. uniprot
Match: A0A7S2Z9X5 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2Z9X5_9RHOD)

HSP 1 Score: 173 bits (439), Expect = 4.130e-50
Identity = 85/183 (46.45%), Postives = 115/183 (62.84%), Query Frame = 0
Query:   65 QDYLKLLREVTEAETALSNPLGTKMSHEIIKFAEDGEAVLDRYVYVEEQDCIGCTHCTTTASSTFFLENTFGRARVFNQLGDSQELVAEAIDTCPVNCIYYVDWEDLVTLEQSRKDQTINNWSRLVGGQDSGSSKKGRRKTKVMDSGIMRCEDCPGRGCRTCPLYGVGHNPEYLRKKAMREAK 247
            +D ++ +RE T+   ALSNP G   SH++++   DGE + +R+VYV+E DCIGC+HC  TA +TFFLE  +GRAR F Q  D  EL++EAIDTCPV+CIY+V +++LV LE  R+ Q INN  RLVG   S S+ +   K+KV+ S  MRCE CP R               YL K   ++ K
Sbjct:   39 EDLVQAMREYTKNSQALSNPKGLLPSHQLVRKDADGETLKERFVYVDELDCIGCSHCAMTARNTFFLEEDYGRARAFQQESDPDELISEAIDTCPVSCIYFVPYDELVILENERETQDINNKQRLVGS--SNSATRNTSKSKVLSSASMRCESCPQRXXXXXXXXXXXXXXXYLAKLEAKKEK 219          
BLAST of Ggra3389.t1 vs. uniprot
Match: A0A7S1HKC7 (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HKC7_HEMAN)

HSP 1 Score: 171 bits (433), Expect = 1.160e-48
Identity = 90/204 (44.12%), Postives = 119/204 (58.33%), Query Frame = 0
Query:   56 PEDVGLKRQQDYLKLLRE-VTEAETALSNPLGTKMSHEIIKFAEDGEAVLDRYVYVEEQDCIGCTHCTTTASSTFFLENTFGRARVFNQLGDSQELVAEAIDTCPVNCIYYVDWEDLVTLEQSRKDQTINNWSRLVGGQ-----------DSGSSKKGRRKTKVMDSGIMRCEDCPGRGCRTCPLYGVGHNPEYLRKKAMREAK 247
            P   GL+  +   K L E V E E   +N   +K S   ++  E G  +LDR+VYV+E  CIGCT+C T A +TF++ + FGRAR F Q GD++E++ EA+ TCPV+CI+YV W+DLV LE  R DQ IN  SRLVGG            ++   K G     +M SG MRC +CPGRG           NPE++RKK  REA+
Sbjct:   24 PGQGGLELDRATEKALGEAVEEGEELYANQDASKDSFTAVEKDEYGNPMLDRFVYVDEITCIGCTNCATVARNTFYMNSDFGRARAFRQGGDTEEMIEEAVATCPVDCIWYVSWDDLVILENERADQVINPASRLVGGNFIESTQVQTYYNNKGGKSGTSGASIMQSGAMRCNNCPGRGXXXXXXXXXXXNPEFVRKKKQREAR 227          
BLAST of Ggra3389.t1 vs. uniprot
Match: A0A448Z963 (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z963_9STRA)

HSP 1 Score: 173 bits (438), Expect = 4.100e-48
Identity = 91/205 (44.39%), Postives = 127/205 (61.95%), Query Frame = 0
Query:   49 STEEESSPEDVGLKRQQDYLKLLREVTEAETALSNPLGTKMSHEIIKFAED-GEAVLDRYVYVEEQDCIGCTHCTTTASSTFFLENTFGRARVFNQLGDSQELVAEAIDTCPVNCIYYVDWEDLVTLEQSRKDQTINNWSRLVGGQDS------GSSKKGRRKTKVMDSGIMRCEDCPGRGCRTCPLYGVGHNPEYLRKKAMREA 246
            S E+   P  +   R+  Y +L  E  E   ++        SH  ++   D GE +  + VYV+E  CIGCT+C T A STFF+E+ FGRARV+ Q GD+ E VA AI+TCPV+CI+YV +E+LVTLE+ R+ Q INN +RLV   +S      GSS +      +  +   RC +CP RGC+TCP++GVG NPEY R++A+R+A
Sbjct:  180 SREKVDEPSGLAEYRKGIYDELGAEYDEENDSIE-------SHTRVEIDPDTGEPIRQQMVYVDEHACIGCTNCATIAQSTFFMESGFGRARVYQQWGDTDETVATAIETCPVDCIHYVPYEELVTLEKDRRGQKINNQARLVNQGESAHMASTGSSSQFTAPQTISGNASARCSNCPTRGCKTCPMFGVGKNPEYERREALRKA 377          
BLAST of Ggra3389.t1 vs. uniprot
Match: A0A7S1XJT9 (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1XJT9_9RHOD)

HSP 1 Score: 167 bits (423), Expect = 7.350e-48
Identity = 81/140 (57.86%), Postives = 99/140 (70.71%), Query Frame = 0
Query:   83 NPLGTKMSHEIIKFAEDGEAVLDRYVYVEEQDCIGCTHCTTTASSTFFLENTFGRARVFNQLGDSQELVAEAIDTCPVNCIYYVDWEDLVTLEQSRKDQTINNWSRLVGGQDSGSSKKGRRKTKVMDSGIMRCEDCPGRG 222
            N  GT+ SHEI++F EDG A  +R+VYVEE DCIGCTHC  TA +TFF+    GRAR F Q GD ++LV EAIDTCPVNCIYYV + DLV LE+ R+ Q INN++RLVG +    S +   +  VM S  MRCE+CP RG
Sbjct:   28 NASGTRPSHEIVEFDEDGYANRERFVYVEEMDCIGCTHCAMTARNTFFMHPDHGRARAFRQDGDPEDLVQEAIDTCPVNCIYYVPFSDLVVLEREREKQVINNFARLVGSEFG--STRATSQASVMRSTEMRCENCPSRG 165          
The following BLAST results are available for this feature:
BLAST of Ggra3389.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IMW01.370e-10463.78Ferredoxin-1 n=1 Tax=Gracilariopsis chorda TaxID=4... [more]
R7QAW01.320e-8667.76Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A5J4Z9X21.160e-6757.92Ferredoxin-1 n=1 Tax=Porphyridium purpureum TaxID=... [more]
A0A1X6NSU86.460e-6062.24Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S0MWU01.460e-5550.27Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S3WR176.650e-5452.27Hypothetical protein (Fragment) n=2 Tax=Emiliania ... [more]
A0A7S2Z9X54.130e-5046.45Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S1HKC71.160e-4844.12Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A448Z9634.100e-4844.39Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S1XJT97.350e-4857.86Hypothetical protein n=1 Tax=Erythrolobus australi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13370Fer4_13coord: 110..163
e-value: 3.8E-10
score: 40.1
NoneNo IPR availableGENE3D3.30.70.20coord: 106..167
e-value: 1.5E-14
score: 55.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 239..263
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 239..253
NoneNo IPR availablePANTHERPTHR45295CHAPERONE PROTEIN DNAJ C76, CHLOROPLASTICcoord: 102..175
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..12
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 17..263
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availableSUPERFAMILY548624Fe-4S ferredoxinscoord: 107..167

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:192718..193509 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3389.t1Ggra3389.t1Gracilaria gracilis GNS1m malemRNAtig00000189_pilon 192718..193509 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra3389.t1 ID=Ggra3389.t1|Name=Ggra3389.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=264bp
MVSVAFACGLAVRGSAQPLPPLRRTNPLLSSVRNVSPVKRARVPNACAST
EEESSPEDVGLKRQQDYLKLLREVTEAETALSNPLGTKMSHEIIKFAEDG
EAVLDRYVYVEEQDCIGCTHCTTTASSTFFLENTFGRARVFNQLGDSQEL
VAEAIDTCPVNCIYYVDWEDLVTLEQSRKDQTINNWSRLVGGQDSGSSKK
GRRKTKVMDSGIMRCEDCPGRGCRTCPLYGVGHNPEYLRKKAMREAKKQQ
KRDDDRKKARRRL*
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