Ggra3389.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3389.t1
Unique NameGgra3389.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length264
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:192718..193509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog159749.K0SKK9
PFAMsFer4_13
Max annot lvl2836|Bacillariophyta
Evalue4.3e-36
EggNOG OGsCOG0484@1|root,KOG0716@2759|Eukaryota,2XCYV@2836|Bacillariophyta
Description4Fe-4S single cluster domain of Ferredoxin I
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3389Ggra3389Gracilaria gracilis GNS1m malegenetig00000189_pilon 192718..193509 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3389.t1.stop1Ggra3389.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000189_pilon 192718..192720 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3389.t1.CDS1Ggra3389.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000189_pilon 192718..193509 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3389.t1.exon1Ggra3389.t1.exon1Gracilaria gracilis GNS1m maleexontig00000189_pilon 192718..193509 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3389.t1.start1Ggra3389.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000189_pilon 193507..193509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3389.t1Ggra3389.t1Gracilaria gracilis GNS1m malepolypeptidetig00000189_pilon 192718..193509 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3389.t1 ID=Ggra3389.t1|Name=Ggra3389.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=264bp
MVSVAFACGLAVRGSAQPLPPLRRTNPLLSSVRNVSPVKRARVPNACAST
EEESSPEDVGLKRQQDYLKLLREVTEAETALSNPLGTKMSHEIIKFAEDG
EAVLDRYVYVEEQDCIGCTHCTTTASSTFFLENTFGRARVFNQLGDSQEL
VAEAIDTCPVNCIYYVDWEDLVTLEQSRKDQTINNWSRLVGGQDSGSSKK
GRRKTKVMDSGIMRCEDCPGRGCRTCPLYGVGHNPEYLRKKAMREAKKQQ
KRDDDRKKARRRL*
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spliced messenger RNA

>Ggra3389.t1 ID=Ggra3389.t1|Name=Ggra3389.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=792bp|location=Sequence derived from alignment at tig00000189_pilon:192718..193509- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTCCGTTGCTTTCGCCTGCGGACTTGCTGTTAGAGGTTCTGCGCA
ACCTTTGCCCCCTCTTCGTCGAACAAACCCGCTACTCTCTTCAGTCCGAA
ACGTTTCGCCTGTAAAGCGCGCAAGGGTACCGAACGCATGTGCTTCAACG
GAAGAAGAATCTTCACCAGAGGACGTTGGCTTAAAACGGCAGCAAGATTA
CTTGAAATTGCTACGCGAAGTCACCGAAGCAGAGACTGCGTTGTCGAATC
CTCTAGGTACCAAAATGTCTCACGAAATCATCAAGTTTGCTGAAGACGGT
GAGGCGGTTCTGGACCGATATGTGTATGTCGAGGAACAAGATTGCATAGG
ATGCACTCATTGCACCACAACAGCGTCAAGCACATTCTTCTTGGAGAACA
CGTTCGGTCGCGCTCGTGTTTTCAACCAGCTTGGAGATTCTCAAGAGCTT
GTGGCGGAGGCCATCGATACCTGTCCTGTTAACTGCATATATTATGTTGA
CTGGGAAGACTTAGTTACTTTGGAGCAAAGTCGAAAGGATCAGACGATTA
ACAATTGGAGTCGTCTTGTCGGTGGCCAGGATTCTGGCAGTTCAAAGAAG
GGAAGGAGGAAGACAAAAGTAATGGACAGCGGTATTATGCGATGCGAGGA
CTGTCCTGGTCGCGGATGTCGCACTTGTCCGCTATATGGTGTTGGACACA
ATCCAGAGTATCTGAGAAAGAAGGCCATGAGGGAAGCGAAGAAGCAGCAA
AAGAGAGACGATGATCGAAAGAAGGCGAGAAGACGGTTGTAG
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protein sequence of Ggra3389.t1

>Ggra3389.t1 ID=Ggra3389.t1|Name=Ggra3389.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=264bp
MVSVAFACGLAVRGSAQPLPPLRRTNPLLSSVRNVSPVKRARVPNACAST
EEESSPEDVGLKRQQDYLKLLREVTEAETALSNPLGTKMSHEIIKFAEDG
EAVLDRYVYVEEQDCIGCTHCTTTASSTFFLENTFGRARVFNQLGDSQEL
VAEAIDTCPVNCIYYVDWEDLVTLEQSRKDQTINNWSRLVGGQDSGSSKK
GRRKTKVMDSGIMRCEDCPGRGCRTCPLYGVGHNPEYLRKKAMREAKKQQ
KRDDDRKKARRRL*
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mRNA from alignment at tig00000189_pilon:192718..193509-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3389.t1 ID=Ggra3389.t1|Name=Ggra3389.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=792bp|location=Sequence derived from alignment at tig00000189_pilon:192718..193509- (Gracilaria gracilis GNS1m male)
ATGGTTTCCGTTGCTTTCGCCTGCGGACTTGCTGTTAGAGGTTCTGCGCA
ACCTTTGCCCCCTCTTCGTCGAACAAACCCGCTACTCTCTTCAGTCCGAA
ACGTTTCGCCTGTAAAGCGCGCAAGGGTACCGAACGCATGTGCTTCAACG
GAAGAAGAATCTTCACCAGAGGACGTTGGCTTAAAACGGCAGCAAGATTA
CTTGAAATTGCTACGCGAAGTCACCGAAGCAGAGACTGCGTTGTCGAATC
CTCTAGGTACCAAAATGTCTCACGAAATCATCAAGTTTGCTGAAGACGGT
GAGGCGGTTCTGGACCGATATGTGTATGTCGAGGAACAAGATTGCATAGG
ATGCACTCATTGCACCACAACAGCGTCAAGCACATTCTTCTTGGAGAACA
CGTTCGGTCGCGCTCGTGTTTTCAACCAGCTTGGAGATTCTCAAGAGCTT
GTGGCGGAGGCCATCGATACCTGTCCTGTTAACTGCATATATTATGTTGA
CTGGGAAGACTTAGTTACTTTGGAGCAAAGTCGAAAGGATCAGACGATTA
ACAATTGGAGTCGTCTTGTCGGTGGCCAGGATTCTGGCAGTTCAAAGAAG
GGAAGGAGGAAGACAAAAGTAATGGACAGCGGTATTATGCGATGCGAGGA
CTGTCCTGGTCGCGGATGTCGCACTTGTCCGCTATATGGTGTTGGACACA
ATCCAGAGTATCTGAGAAAGAAGGCCATGAGGGAAGCGAAGAAGCAGCAA
AAGAGAGACGATGATCGAAAGAAGGCGAGAAGACGGTTGTAG
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Coding sequence (CDS) from alignment at tig00000189_pilon:192718..193509-

>Ggra3389.t1 ID=Ggra3389.t1|Name=Ggra3389.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=792bp|location=Sequence derived from alignment at tig00000189_pilon:192718..193509- (Gracilaria gracilis GNS1m male)
ATGGTTTCCGTTGCTTTCGCCTGCGGACTTGCTGTTAGAGGTTCTGCGCA
ACCTTTGCCCCCTCTTCGTCGAACAAACCCGCTACTCTCTTCAGTCCGAA
ACGTTTCGCCTGTAAAGCGCGCAAGGGTACCGAACGCATGTGCTTCAACG
GAAGAAGAATCTTCACCAGAGGACGTTGGCTTAAAACGGCAGCAAGATTA
CTTGAAATTGCTACGCGAAGTCACCGAAGCAGAGACTGCGTTGTCGAATC
CTCTAGGTACCAAAATGTCTCACGAAATCATCAAGTTTGCTGAAGACGGT
GAGGCGGTTCTGGACCGATATGTGTATGTCGAGGAACAAGATTGCATAGG
ATGCACTCATTGCACCACAACAGCGTCAAGCACATTCTTCTTGGAGAACA
CGTTCGGTCGCGCTCGTGTTTTCAACCAGCTTGGAGATTCTCAAGAGCTT
GTGGCGGAGGCCATCGATACCTGTCCTGTTAACTGCATATATTATGTTGA
CTGGGAAGACTTAGTTACTTTGGAGCAAAGTCGAAAGGATCAGACGATTA
ACAATTGGAGTCGTCTTGTCGGTGGCCAGGATTCTGGCAGTTCAAAGAAG
GGAAGGAGGAAGACAAAAGTAATGGACAGCGGTATTATGCGATGCGAGGA
CTGTCCTGGTCGCGGATGTCGCACTTGTCCGCTATATGGTGTTGGACACA
ATCCAGAGTATCTGAGAAAGAAGGCCATGAGGGAAGCGAAGAAGCAGCAA
AAGAGAGACGATGATCGAAAGAAGGCGAGAAGACGGTTGTAG
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