Ggra3388.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra3388.t1
Unique NameGgra3388.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length296
Homology
BLAST of Ggra3388.t1 vs. uniprot
Match: A0A2V3IMY1 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMY1_9FLOR)

HSP 1 Score: 262 bits (670), Expect = 9.370e-84
Identity = 151/252 (59.92%), Postives = 180/252 (71.43%), Query Frame = 0
Query:   40 LPQRSLRAHLPSPESNALLDDLCSGSQPRQLVALVRLSSIPPHEALFILDKSETLTSSNIQVRLSALATLGKLGDRERAGVLVKALESDRDHSIRAAAANGLGNLLHPTKEEGPVSGYENVLHALVXXXXXXXXXXXXXXXXXXXXXXXNPDASEIVVPVVRDLAAPALEAIAAVAAIGKIMDAGRLTAEVLEAVVARASDRDELVRAAVVRTLGRWFDVDSVPEVLQRMKENEKRYGRSNHVQAILDDVLG 291
            LPQR  RA L SP + +LLDDLCS SQ RQLVALV LSS+PP E +++L KS+ LTS N+QVR+SA ATLGKLG RE    L+ ALESD DHSIRAAAA+GLG+LL P   EG V G  + L ALV                       NP A + V+ VVRDL+APALEA AAV AIG++ +   LT E+L+AV ARA DR++LVRAAVVRTLGRW + +SVPE+LQRMK +EKR+G+S HVQAILDDVLG
Sbjct:   37 LPQRRPRAQLISPNAESLLDDLCSESQARQLVALVHLSSLPPGEGIWVLRKSDVLTSRNLQVRVSAFATLGKLGIREEGRTLIVALESDPDHSIRAAAASGLGDLLRPNDGEGVVRGQGDALEALVRAAEQDAHFIVRYAALVSVGELGNPAALDAVLRVVRDLSAPALEATAAVYAIGQLANDDALTGEILDAVSARAGDREDLVRAAVVRTLGRWSNANSVPELLQRMKGDEKRFGQSTHVQAILDDVLG 288          
BLAST of Ggra3388.t1 vs. uniprot
Match: R7QDZ2 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDZ2_CHOCR)

HSP 1 Score: 147 bits (370), Expect = 8.110e-39
Identity = 101/246 (41.06%), Postives = 145/246 (58.94%), Query Frame = 0
Query:   44 SLRAHL-PSPESNALLDDLCSGSQPRQLVALVRLSSIPPHEALFILDKSETLTSSNIQVRLSALATLGKLGDRERAGVLVKALESDRD-HSIRAAAANGLGNLLHPTKEEGPVSGYENVLHALVXXXXXXXXXXXXXXXXXXXXXXXNPDASEIVVPVVRDLAAPALEAIAAVAAIGKIMDAGRLTAEVLEAVVARASDRDELVRAAVVRTLGRWFDVDSVPEVLQRMKENEKRYGRSNHVQAILD 287
            S RA L P P++NALL+ L  G Q  Q++ALV L  +P  +A+ +L +S  L S N QVRL+A+ATLGKLG    A  LV  L+ D D +S+RAAAAN LG LL  + +   + G    L ALV                       +  A + ++P+ ++ A+  LEA AAV AIG+I     + A V++ V++RA+DR++LVRAAV +TL  W  V+     L RMK +E++YG+S+ V+AIL+
Sbjct:   37 STRASLQPPPDANALLEKLKGGVQHTQMLALVLLPQLPSKQAVSLLYESGVLDSENRQVRLTAVATLGKLGVPHEANRLVTVLKDDSDDYSVRAAAANALGYLLPGSGDGSGLVG--EALSALVDVATGDDHFILKYAAIVTIGNLGDKSAMDTLIPIAQNPASLPLEAAAAVTAIGEISAVDMVEASVVDVVISRAADREDLVRAAVAKTLKLWVTVERAASALARMKTDEEKYGQSDFVRAILN 280          
The following BLAST results are available for this feature:
BLAST of Ggra3388.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IMY19.370e-8459.92Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QDZ28.110e-3941.06Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004155PBS lyase HEAT-like repeatSMARTSM00567EZ_HEATcoord: 174..203
e-value: 2.1
score: 17.3
coord: 99..128
e-value: 0.013
score: 24.7
coord: 131..171
e-value: 660.0
score: 2.0
coord: 243..272
e-value: 84.0
score: 9.3
NoneNo IPR availablePFAMPF13646HEAT_2coord: 121..200
e-value: 1.1E-8
score: 35.3
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 92..288
e-value: 1.6E-22
score: 81.9
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 93..274

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:189674..190561 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3388.t1Ggra3388.t1Gracilaria gracilis GNS1m malemRNAtig00000189_pilon 189674..190561 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra3388.t1 ID=Ggra3388.t1|Name=Ggra3388.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=296bp
MYRVSFVSPTYSGKWCRYQAFISRKFLSSPRQRSPSFLTLPQRSLRAHLP
SPESNALLDDLCSGSQPRQLVALVRLSSIPPHEALFILDKSETLTSSNIQ
VRLSALATLGKLGDRERAGVLVKALESDRDHSIRAAAANGLGNLLHPTKE
EGPVSGYENVLHALVRAAQEDEHFIVRYAALVALGELANPDASEIVVPVV
RDLAAPALEAIAAVAAIGKIMDAGRLTAEVLEAVVARASDRDELVRAAVV
RTLGRWFDVDSVPEVLQRMKENEKRYGRSNHVQAILDDVLGDGGA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004155PBS_lyase_HEAT
IPR011989ARM-like
IPR016024ARM-type_fold