Ggra3388.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3388.t1
Unique NameGgra3388.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length296
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:189674..190561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3388Ggra3388Gracilaria gracilis GNS1m malegenetig00000189_pilon 189674..190561 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3388.t1.stop1Ggra3388.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000189_pilon 189674..189676 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3388.t1.CDS1Ggra3388.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000189_pilon 189674..190561 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3388.t1.exon1Ggra3388.t1.exon1Gracilaria gracilis GNS1m maleexontig00000189_pilon 189674..190561 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3388.t1.start1Ggra3388.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000189_pilon 190559..190561 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3388.t1Ggra3388.t1Gracilaria gracilis GNS1m malepolypeptidetig00000189_pilon 189674..190561 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3388.t1 ID=Ggra3388.t1|Name=Ggra3388.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=296bp
MYRVSFVSPTYSGKWCRYQAFISRKFLSSPRQRSPSFLTLPQRSLRAHLP
SPESNALLDDLCSGSQPRQLVALVRLSSIPPHEALFILDKSETLTSSNIQ
VRLSALATLGKLGDRERAGVLVKALESDRDHSIRAAAANGLGNLLHPTKE
EGPVSGYENVLHALVRAAQEDEHFIVRYAALVALGELANPDASEIVVPVV
RDLAAPALEAIAAVAAIGKIMDAGRLTAEVLEAVVARASDRDELVRAAVV
RTLGRWFDVDSVPEVLQRMKENEKRYGRSNHVQAILDDVLGDGGA*
back to top

spliced messenger RNA

>Ggra3388.t1 ID=Ggra3388.t1|Name=Ggra3388.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=888bp|location=Sequence derived from alignment at tig00000189_pilon:189674..190561- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATAGAGTCAGTTTCGTATCACCAACGTACTCAGGCAAATGGTGTCG
CTATCAAGCTTTCATTTCCAGAAAATTCTTGAGCTCCCCGCGACAGCGGT
CACCAAGCTTTCTCACGTTACCTCAACGTAGCCTTCGAGCTCACCTTCCG
TCACCCGAATCCAATGCTCTCCTGGATGACCTTTGCAGCGGGTCTCAGCC
GCGGCAACTTGTCGCCCTTGTGCGATTGAGCTCGATTCCACCTCATGAGG
CCTTGTTTATTTTGGACAAGTCCGAGACACTGACGTCAAGCAACATACAA
GTTCGACTGTCGGCGCTTGCTACACTTGGAAAACTGGGAGATCGAGAACG
CGCTGGTGTTCTAGTGAAAGCACTGGAATCCGACAGAGACCATTCGATCC
GGGCTGCGGCTGCAAACGGGTTAGGAAACTTGCTGCATCCGACCAAAGAA
GAAGGACCTGTTTCAGGATATGAAAACGTTTTACACGCTTTGGTTCGGGC
CGCTCAAGAGGATGAGCACTTTATAGTGCGATACGCGGCTTTAGTAGCTC
TTGGAGAATTAGCAAACCCAGATGCTTCAGAGATTGTGGTGCCCGTAGTT
CGCGATTTAGCAGCCCCTGCTCTCGAAGCCATTGCAGCGGTCGCAGCCAT
CGGCAAAATAATGGATGCCGGAAGACTCACTGCCGAAGTACTTGAGGCGG
TTGTGGCACGGGCGTCAGATAGAGACGAATTAGTTCGAGCGGCTGTTGTG
CGCACTCTAGGTAGATGGTTTGATGTTGATTCAGTACCGGAGGTGCTTCA
GCGTATGAAAGAGAACGAAAAGAGATACGGGCGAAGCAATCATGTGCAGG
CAATTCTTGACGACGTACTAGGGGACGGCGGCGCATGA
back to top

protein sequence of Ggra3388.t1

>Ggra3388.t1 ID=Ggra3388.t1|Name=Ggra3388.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=296bp
MYRVSFVSPTYSGKWCRYQAFISRKFLSSPRQRSPSFLTLPQRSLRAHLP
SPESNALLDDLCSGSQPRQLVALVRLSSIPPHEALFILDKSETLTSSNIQ
VRLSALATLGKLGDRERAGVLVKALESDRDHSIRAAAANGLGNLLHPTKE
EGPVSGYENVLHALVRAAQEDEHFIVRYAALVALGELANPDASEIVVPVV
RDLAAPALEAIAAVAAIGKIMDAGRLTAEVLEAVVARASDRDELVRAAVV
RTLGRWFDVDSVPEVLQRMKENEKRYGRSNHVQAILDDVLGDGGA*
back to top

mRNA from alignment at tig00000189_pilon:189674..190561-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3388.t1 ID=Ggra3388.t1|Name=Ggra3388.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=888bp|location=Sequence derived from alignment at tig00000189_pilon:189674..190561- (Gracilaria gracilis GNS1m male)
ATGTATAGAGTCAGTTTCGTATCACCAACGTACTCAGGCAAATGGTGTCG
CTATCAAGCTTTCATTTCCAGAAAATTCTTGAGCTCCCCGCGACAGCGGT
CACCAAGCTTTCTCACGTTACCTCAACGTAGCCTTCGAGCTCACCTTCCG
TCACCCGAATCCAATGCTCTCCTGGATGACCTTTGCAGCGGGTCTCAGCC
GCGGCAACTTGTCGCCCTTGTGCGATTGAGCTCGATTCCACCTCATGAGG
CCTTGTTTATTTTGGACAAGTCCGAGACACTGACGTCAAGCAACATACAA
GTTCGACTGTCGGCGCTTGCTACACTTGGAAAACTGGGAGATCGAGAACG
CGCTGGTGTTCTAGTGAAAGCACTGGAATCCGACAGAGACCATTCGATCC
GGGCTGCGGCTGCAAACGGGTTAGGAAACTTGCTGCATCCGACCAAAGAA
GAAGGACCTGTTTCAGGATATGAAAACGTTTTACACGCTTTGGTTCGGGC
CGCTCAAGAGGATGAGCACTTTATAGTGCGATACGCGGCTTTAGTAGCTC
TTGGAGAATTAGCAAACCCAGATGCTTCAGAGATTGTGGTGCCCGTAGTT
CGCGATTTAGCAGCCCCTGCTCTCGAAGCCATTGCAGCGGTCGCAGCCAT
CGGCAAAATAATGGATGCCGGAAGACTCACTGCCGAAGTACTTGAGGCGG
TTGTGGCACGGGCGTCAGATAGAGACGAATTAGTTCGAGCGGCTGTTGTG
CGCACTCTAGGTAGATGGTTTGATGTTGATTCAGTACCGGAGGTGCTTCA
GCGTATGAAAGAGAACGAAAAGAGATACGGGCGAAGCAATCATGTGCAGG
CAATTCTTGACGACGTACTAGGGGACGGCGGCGCATGA
back to top

Coding sequence (CDS) from alignment at tig00000189_pilon:189674..190561-

>Ggra3388.t1 ID=Ggra3388.t1|Name=Ggra3388.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=888bp|location=Sequence derived from alignment at tig00000189_pilon:189674..190561- (Gracilaria gracilis GNS1m male)
ATGTATAGAGTCAGTTTCGTATCACCAACGTACTCAGGCAAATGGTGTCG
CTATCAAGCTTTCATTTCCAGAAAATTCTTGAGCTCCCCGCGACAGCGGT
CACCAAGCTTTCTCACGTTACCTCAACGTAGCCTTCGAGCTCACCTTCCG
TCACCCGAATCCAATGCTCTCCTGGATGACCTTTGCAGCGGGTCTCAGCC
GCGGCAACTTGTCGCCCTTGTGCGATTGAGCTCGATTCCACCTCATGAGG
CCTTGTTTATTTTGGACAAGTCCGAGACACTGACGTCAAGCAACATACAA
GTTCGACTGTCGGCGCTTGCTACACTTGGAAAACTGGGAGATCGAGAACG
CGCTGGTGTTCTAGTGAAAGCACTGGAATCCGACAGAGACCATTCGATCC
GGGCTGCGGCTGCAAACGGGTTAGGAAACTTGCTGCATCCGACCAAAGAA
GAAGGACCTGTTTCAGGATATGAAAACGTTTTACACGCTTTGGTTCGGGC
CGCTCAAGAGGATGAGCACTTTATAGTGCGATACGCGGCTTTAGTAGCTC
TTGGAGAATTAGCAAACCCAGATGCTTCAGAGATTGTGGTGCCCGTAGTT
CGCGATTTAGCAGCCCCTGCTCTCGAAGCCATTGCAGCGGTCGCAGCCAT
CGGCAAAATAATGGATGCCGGAAGACTCACTGCCGAAGTACTTGAGGCGG
TTGTGGCACGGGCGTCAGATAGAGACGAATTAGTTCGAGCGGCTGTTGTG
CGCACTCTAGGTAGATGGTTTGATGTTGATTCAGTACCGGAGGTGCTTCA
GCGTATGAAAGAGAACGAAAAGAGATACGGGCGAAGCAATCATGTGCAGG
CAATTCTTGACGACGTACTAGGGGACGGCGGCGCATGA
back to top