Ggra3346.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra3346.t1
Unique NameGgra3346.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length232
Homology
BLAST of Ggra3346.t1 vs. uniprot
Match: A0A2V3IG78 (Peptidyl-tRNA hydrolase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IG78_9FLOR)

HSP 1 Score: 336 bits (861), Expect = 5.200e-114
Identity = 163/229 (71.18%), Postives = 200/229 (87.34%), Query Frame = 0
Query:    3 CSTTGTPSSSSESKQPSPPPKTPNGRPKPPERGDTLLVVGLGNPGPRFENTRHNVGFSLLDQYAVRHATGKFRKENSVQGEITRFHLYNKKIMLLKPTTFMNASGRAVRAALKYLNAPVAAMLVVVDDMSLPIGDLRLRAKGSAGGHNGLKSIQQNVGGMSYARLRVGVGSPRLGAQEWADFVLAPFSRGDRKIMEEVEWDVMEAIDFWVQEPSLEKVQNQIALTKQKR 231
            C+T+ TPS S+ +  PSP  K  N RP PPERG+ LLVVGLGNPGPRF+NTRHNVGF+LLDQYA RH+  KFR+E+SVQG++ RFHL+++ +MLLKP+TFMNASGRAVRAALKY++APVAA+LVV DD+SL +GD+RLRAKGSAGGHNGLKSIQQ VGGM+YARLR+GVGSP  GA++WADFVL  FSR +++++++VEWDVMEAID+WV E S+EKVQ QIAL KQ+R
Sbjct:   41 CTTSPTPSPSNATANPSPLIKQRNSRPPPPERGNKLLVVGLGNPGPRFDNTRHNVGFTLLDQYAARHSASKFRRESSVQGDVARFHLHDRSVMLLKPSTFMNASGRAVRAALKYIDAPVAALLVVTDDISLDLGDIRLRAKGSAGGHNGLKSIQQCVGGMNYARLRIGVGSPSRGAEDWADFVLGSFSRSEKQVLDKVEWDVMEAIDYWVDEASIEKVQTQIALAKQRR 269          
BLAST of Ggra3346.t1 vs. uniprot
Match: A0A7S0ZE14 (Peptidyl-tRNA hydrolase n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZE14_9RHOD)

HSP 1 Score: 173 bits (439), Expect = 7.870e-50
Identity = 89/190 (46.84%), Postives = 129/190 (67.89%), Query Frame = 0
Query:   34 RGDTLLVVGLGNPGPRFENTRHNVGFSLLDQYAVRHATGKFRKENSVQGEITRFHLYNKK---IMLLKPTTFMNASGRAVRAALKYLNAPVAAMLVVVDDMSLPIGDLRLRAKGSAGGHNGLKSIQQNVGGMSYARLRVGVGSPRLGAQEWADFVLAPFSRGDRKIMEEVEWDVMEAIDFWVQEPSLEKV 220
            RG  LLVVGLGNPG  +E TRHNVGF  LD +A R    KF+ E+     I+  +L + K   + L+KP+T+MN SG++V+A  K+   P +A+LVVVD++++  G +RLR KGSAGGHNGLKSIQQ++G   Y RLR+G+G P    ++ A+FVLA F+R ++K ++ V  D M+ ++ WV+  +  +V
Sbjct:   96 RGSKLLVVGLGNPGKEYEMTRHNVGFQFLDIWAARLNASKFKVESKYSALISEVNLNDSKNTQVFLMKPSTYMNLSGQSVKAFCKFHKIPSSAVLVVVDEVNVDFGKVRLREKGSAGGHNGLKSIQQSLGTQEYPRLRIGLGRPN-HREDLANFVLAKFTRSEQKDIQNVYIDCMDILEEWVRNENFSQV 284          
BLAST of Ggra3346.t1 vs. uniprot
Match: A0A7S3ACE0 (Peptidyl-tRNA hydrolase n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ACE0_9RHOD)

HSP 1 Score: 169 bits (428), Expect = 4.830e-49
Identity = 85/191 (44.50%), Postives = 119/191 (62.30%), Query Frame = 0
Query:   34 RGDTLLVVGLGNPGPRFENTRHNVGFSLLDQYAVRHATGKFRKENSVQGEITRFHLYNKKIMLLKPTTFMNASGRAVRAALKYLNAPVAAMLVVVDDMSLPIGDLRLRAKGSAGGHNGLKSIQQNVGGMSYARLRVGVGSPRLGAQEWADFVLAPFSRGDRKIMEEVEWDVMEAIDFWVQEPSLEKVQNQI 224
            RG  L V+GLGNPG  F +TRHNVGF +++ +A RH  G  +       E+    L NK +ML+KP TFMN SG +VR  + +   P  A+L+V DD+ L +G +RLRAKGS+GGHNGLK I++++G   Y RL+VGVG P     +  D+VL  F R +   ++++ W  +E ID WV+   L KV N +
Sbjct:   32 RGSRLAVIGLGNPGNEFRSTRHNVGFDIIEAFAQRHG-GNMKMAQKYLAEMCEIKLENKTVMLVKPMTFMNLSGTSVRKIVDFYKLPHDAILIVADDIYLELGRVRLRAKGSSGGHNGLKHIEKSLGTQIYPRLKVGVGGPNKA--DLKDYVLGKFKRSEVDAVDDMLWTCVELIDEWVKNADLSKVVNNV 219          
BLAST of Ggra3346.t1 vs. uniprot
Match: A0A4R0QV99 (Peptidyl-tRNA hydrolase n=3 Tax=unclassified Synechococcus TaxID=2626047 RepID=A0A4R0QV99_9SYNE)

HSP 1 Score: 166 bits (419), Expect = 6.030e-48
Identity = 91/196 (46.43%), Postives = 125/196 (63.78%), Query Frame = 0
Query:   33 ERGDTLLVVGLGNPGPRFENTRHNVGFSLLDQYAVRHATGKFRKENSVQGEITRFHLYNKKIMLLKPTTFMNASGRAVRAALKYLNAPVAAMLVVVDDMSLPIGDLRLRAKGSAGGHNGLKSIQQNVGGMSYARLRVGVGSPRLGAQE----WADFVLAPFSRGDRKIMEEVEWDVMEAIDFWVQEPSLEKVQNQI 224
            +RG   LVVGLGNPG R+  TRHNVGF  L+    R  T +FR    + GE+    L  +++ LL P TFMN SGRA+RAAL + +  V  +LVVVDDM LP+G LRLRAKGSAGGHNGL+S  Q++G   +ARL++G+G+P    +E        VL  FS+ ++ ++E V   V++ +D  +Q   LE+  NQ+
Sbjct:    2 DRGQLRLVVGLGNPGDRYAGTRHNVGFMALEAMTRREGT-RFRSMPKLHGELAELGLGAERLRLLMPQTFMNDSGRAIRAALDWFDLDVNQLLVVVDDMDLPLGRLRLRAKGSAGGHNGLRSTIQHLGTQDFARLKIGIGAPGRTPEERRARTVSHVLGSFSKEEQPLLETVLDAVLKGLDL-IQRQGLERAGNQL 195          
BLAST of Ggra3346.t1 vs. uniprot
Match: A0A2E0KEA9 (Peptidyl-tRNA hydrolase n=2 Tax=unclassified Synechococcus TaxID=2626047 RepID=A0A2E0KEA9_9SYNE)

HSP 1 Score: 165 bits (418), Expect = 8.800e-48
Identity = 88/196 (44.90%), Postives = 127/196 (64.80%), Query Frame = 0
Query:   33 ERGDTLLVVGLGNPGPRFENTRHNVGFSLLDQYAVRHATGKFRKENSVQGEITRFHLYNKKIMLLKPTTFMNASGRAVRAALKYLNAPVAAMLVVVDDMSLPIGDLRLRAKGSAGGHNGLKSIQQNVGGMSYARLRVGVGSPRLGAQE----WADFVLAPFSRGDRKIMEEVEWDVMEAIDFWVQEPSLEKVQNQI 224
            + GD  LVVGLGNPG R+  TRHNVGF  L+ +A R    +FR    +QGE+    L + ++ LL P T+MN SGR++RAAL + +  V  +LV+VDDM LP+G LRLRAKGSAGGHNGLKS  Q++G   +ARLR+G+G+P   A+E        VL  F + ++ +++EV  +V+  +   +Q+  L++  N +
Sbjct:    2 QSGDLRLVVGLGNPGKRYAGTRHNVGFMALETWAQRENV-RFRTMTKLQGELAEVGLGSNRLRLLMPQTYMNESGRSIRAALDWFDLSVDQVLVLVDDMDLPLGRLRLRAKGSAGGHNGLKSTIQHLGTQDFARLRIGIGAPGRSAEERRARTVSHVLGSFHQAEQTLLDEVLEEVLRGLVL-IQKQGLDRAGNHL 195          
BLAST of Ggra3346.t1 vs. uniprot
Match: PTH (Peptidyl-tRNA hydrolase n=10 Tax=Synechococcales TaxID=1890424 RepID=PTH_SYNS3)

HSP 1 Score: 165 bits (417), Expect = 1.280e-47
Identity = 86/180 (47.78%), Postives = 119/180 (66.11%), Query Frame = 0
Query:   34 RGDTLLVVGLGNPGPRFENTRHNVGFSLLDQYAVRHATGKFRKENSVQGEITRFHLYNKKIMLLKPTTFMNASGRAVRAALKYLNAPVAAMLVVVDDMSLPIGDLRLRAKGSAGGHNGLKSIQQNVGGMSYARLRVGVGSPRLGAQE----WADFVLAPFSRGDRKIMEEVEWDVMEAID 209
            RGD  LVVGLGNPG R+ NTRHNVGF  L++ A R   G FR    +QG++      +K++ LL P TFMN SGR++RAAL +    +  +LV+VDDM LP+G LRLRA+GSAGGHNGLKS  Q++G   +ARLR+G+G+P     E        VL  FSR +  ++++V  +V++ ++
Sbjct:    3 RGDLRLVVGLGNPGNRYANTRHNVGFMALERLASREGGG-FRSMPKLQGQLADLGSGDKRLRLLMPQTFMNDSGRSIRAALDWFGFELHQLLVLVDDMDLPLGRLRLRARGSAGGHNGLKSTIQHLGTQDFARLRIGIGAPGQNPSERKARTVSHVLGSFSRDEEPLLDKVLLEVVDGLE 181          
BLAST of Ggra3346.t1 vs. uniprot
Match: A0A2E9J107 (Peptidyl-tRNA hydrolase n=1 Tax=Synechococcus sp. NP17 TaxID=2024885 RepID=A0A2E9J107_9SYNE)

HSP 1 Score: 162 bits (411), Expect = 1.030e-46
Identity = 84/180 (46.67%), Postives = 116/180 (64.44%), Query Frame = 0
Query:   34 RGDTLLVVGLGNPGPRFENTRHNVGFSLLDQYAVRHATGKFRKENSVQGEITRFHLYNKKIMLLKPTTFMNASGRAVRAALKYLNAPVAAMLVVVDDMSLPIGDLRLRAKGSAGGHNGLKSIQQNVGGMSYARLRVGVGSPRLGAQE----WADFVLAPFSRGDRKIMEEVEWDVMEAID 209
            RGD  LVVGLGNPG R+ NTRHNVGF +L++   R   G FR    +QG++    L   ++ LL P T+MN SGR++RAAL +     + MLV+VDDM LP+G LRLR+KGSAGGHNGLKS  Q++G   +ARLR+G+G+P     E        VL  FS  +  ++ +V  +V++ ++
Sbjct:    3 RGDLRLVVGLGNPGNRYANTRHNVGFMVLERLVARDG-GNFRSMPKLQGQLAEKGLGESRLRLLMPQTYMNESGRSIRAALDWFGFEASQMLVLVDDMDLPLGRLRLRSKGSAGGHNGLKSTIQHLGNQDFARLRIGIGAPGQNPSERRARTVSHVLGRFSNEEEPLLTKVLSEVVDGLE 181          
BLAST of Ggra3346.t1 vs. uniprot
Match: A0A7V3RNT9 (Peptidyl-tRNA hydrolase n=1 Tax=Gemmataceae bacterium TaxID=2052164 RepID=A0A7V3RNT9_9BACT)

HSP 1 Score: 162 bits (409), Expect = 1.130e-46
Identity = 83/173 (47.98%), Postives = 116/173 (67.05%), Query Frame = 0
Query:   39 LVVGLGNPGPRFENTRHNVGFSLLDQYAVRHATGKFRKENSVQGEITRFHLYNKKIMLLKPTTFMNASGRAVRAALKYLNAPVAAMLVVVDDMSLPIGDLRLRAKGSAGGHNGLKSIQQNVGGMSYARLRVGVGSPRLGAQEWADFVLAPFSRGDRKIMEEVEWDVMEAIDFW 211
            +VVGLGNPG R+E TRHNVGF+++D  A     G+F  +   Q +++  +    KI+L+KP TFMN SGR VRA + +   P+A +LVV DD++LP+G LR+RAKG+ GGHNGL+ IQ ++G   YARLR+GVG+PR  A    D VL  FS  +R ++EE     ++A+  W
Sbjct:    3 VVVGLGNPGKRYEGTRHNVGFAVIDNLAASPRAGRF--QTRFQAQVSELNDEVGKILLVKPETFMNLSGRCVRAIVDFYQLPLADLLVVCDDINLPLGKLRVRAKGTHGGHNGLRDIQDHLGTTEYARLRIGVGAPRDDA---VDHVLGRFSPSERPVIEEAIALAVQAVLTW 170          
BLAST of Ggra3346.t1 vs. uniprot
Match: aminoacyl-tRNA hydrolase n=1 Tax=Candidatus Neptunochlamydia vexilliferae TaxID=1651774 RepID=UPI00189190AC (aminoacyl-tRNA hydrolase n=1 Tax=Candidatus Neptunochlamydia vexilliferae TaxID=1651774 RepID=UPI00189190AC)

HSP 1 Score: 160 bits (405), Expect = 4.390e-46
Identity = 77/174 (44.25%), Postives = 120/174 (68.97%), Query Frame = 0
Query:   39 LVVGLGNPGPRFENTRHNVGFSLLDQYAVRHATGKFRKENSVQGEITRFHLYNKKIMLLKPTTFMNASGRAVRAALKYLNAPVAAMLVVVDDMSLPIGDLRLRAKGSAGGHNGLKSIQQNVGGMSYARLRVGVGSPRLGAQEWADFVLAPFSRGDRKIMEEVEWDVMEAIDFWV 212
            L+VGLGNPG ++ENTRHN+G  +L  +A ++    F+KE+ ++GEI +  +  KK++ L PTT+MN SG+AVR  + +   P   +L++ DD +LP G LR R KGSAGGHNGLK+I++ +G   Y RL++G+G P +G  E  D+VLAPFS+ +++ + E+  + +  I+ W+
Sbjct:    8 LIVGLGNPGKKYENTRHNLGQMVLFAFAEKYGLS-FKKESDLKGEIAKGDVKGKKVVFLFPTTYMNLSGQAVRKTMSFYKIPQEKVLILSDDAALPFGTLRYREKGSAGGHNGLKNIEECLGNQDYQRLKLGIGEPLVGYLE--DYVLAPFSKEEQEKIPEIATESIGFIEEWL 178          
BLAST of Ggra3346.t1 vs. uniprot
Match: A0A4V0HWD3 (Peptidyl-tRNA hydrolase n=1 Tax=Gemmataceae bacterium TaxID=2052164 RepID=A0A4V0HWD3_9BACT)

HSP 1 Score: 161 bits (407), Expect = 4.920e-46
Identity = 83/174 (47.70%), Postives = 113/174 (64.94%), Query Frame = 0
Query:   39 LVVGLGNPGPRFENTRHNVGFSLLDQYAVRHATGKFRKENSVQGEITRFHLYNKKIMLLKPTTFMNASGRAVRAALKYLNAPVAAMLVVVDDMSLPIGDLRLRAKGSAGGHNGLKSIQQNVGGMSYARLRVGVGSPRLGAQEWADFVLAPFSRGDRKIMEEVEWDVMEAIDFWV 212
            LVVGLGNPGP++  TRHNVGF ++D  A       FR++   +  +T     ++ ++L+KP TFMN SGRAVRAAL +   P+  +LVV DD +LP+G LR+RAKGS GG NGL++IQ  +G  +YARLR+GVG P  G  +  DFVL+ F  G+R   E+      +A+  WV
Sbjct:    3 LVVGLGNPGPKYTGTRHNVGFDVIDYLAAAPGCPAFREK--FEAFVTEVKEGDEAVLLMKPLTFMNLSGRAVRAALDFYKLPIDRVLVVCDDFNLPLGKLRVRAKGSHGGQNGLRNIQDQLGSDAYARLRIGVGQPEPG--DAVDFVLSKFRPGERAAAEDAVAQAAQAVLAWV 172          
The following BLAST results are available for this feature:
BLAST of Ggra3346.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IG785.200e-11471.18Peptidyl-tRNA hydrolase n=1 Tax=Gracilariopsis cho... [more]
A0A7S0ZE147.870e-5046.84Peptidyl-tRNA hydrolase n=1 Tax=Timspurckia oligop... [more]
A0A7S3ACE04.830e-4944.50Peptidyl-tRNA hydrolase n=2 Tax=Rhodosorus marinus... [more]
A0A4R0QV996.030e-4846.43Peptidyl-tRNA hydrolase n=3 Tax=unclassified Synec... [more]
A0A2E0KEA98.800e-4844.90Peptidyl-tRNA hydrolase n=2 Tax=unclassified Synec... [more]
PTH1.280e-4747.78Peptidyl-tRNA hydrolase n=10 Tax=Synechococcales T... [more]
A0A2E9J1071.030e-4646.67Peptidyl-tRNA hydrolase n=1 Tax=Synechococcus sp. ... [more]
A0A7V3RNT91.130e-4647.98Peptidyl-tRNA hydrolase n=1 Tax=Gemmataceae bacter... [more]
aminoacyl-tRNA hydrolase n=1 Tax=Candidatus Neptunochlamydia vexilliferae TaxID=1651774 RepID=UPI00189190AC4.390e-4644.25aminoacyl-tRNA hydrolase n=1 Tax=Candidatus Neptun... [more]
A0A4V0HWD34.920e-4647.70Peptidyl-tRNA hydrolase n=1 Tax=Gemmataceae bacter... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001328Peptidyl-tRNA hydrolasePFAMPF01195Pept_tRNA_hydrocoord: 39..224
e-value: 3.7E-55
score: 186.6
IPR001328Peptidyl-tRNA hydrolaseTIGRFAMTIGR00447TIGR00447coord: 38..224
e-value: 2.0E-52
score: 175.6
IPR001328Peptidyl-tRNA hydrolasePANTHERPTHR17224PEPTIDYL-TRNA HYDROLASEcoord: 10..221
IPR001328Peptidyl-tRNA hydrolaseHAMAPMF_00083Pept_tRNA_hydro_bactcoord: 37..217
score: 31.831724
IPR001328Peptidyl-tRNA hydrolaseCDDcd00462PTHcoord: 39..212
e-value: 2.81149E-72
score: 215.801
IPR036416Peptidyl-tRNA hydrolase superfamilyGENE3D3.40.50.1470coord: 32..229
e-value: 2.3E-59
score: 202.1
IPR036416Peptidyl-tRNA hydrolase superfamilySUPERFAMILY53178Peptidyl-tRNA hydrolase-likecoord: 38..222
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
NoneNo IPR availablePANTHERPTHR17224:SF1PEPTIDYL-TRNA HYDROLASE-RELATEDcoord: 10..221
IPR018171Peptidyl-tRNA hydrolase, conserved sitePROSITEPS01195PEPT_TRNA_HYDROL_1coord: 50..63
IPR018171Peptidyl-tRNA hydrolase, conserved sitePROSITEPS01196PEPT_TRNA_HYDROL_2coord: 145..155

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:74352..75047 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3346.t1Ggra3346.t1Gracilaria gracilis GNS1m malemRNAtig00000189_pilon 74352..75047 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra3346.t1 ID=Ggra3346.t1|Name=Ggra3346.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=232bp
MRCSTTGTPSSSSESKQPSPPPKTPNGRPKPPERGDTLLVVGLGNPGPRF
ENTRHNVGFSLLDQYAVRHATGKFRKENSVQGEITRFHLYNKKIMLLKPT
TFMNASGRAVRAALKYLNAPVAAMLVVVDDMSLPIGDLRLRAKGSAGGHN
GLKSIQQNVGGMSYARLRVGVGSPRLGAQEWADFVLAPFSRGDRKIMEEV
EWDVMEAIDFWVQEPSLEKVQNQIALTKQKR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001328Pept_tRNA_hydro
IPR036416Pept_tRNA_hydro_sf
IPR018171Pept_tRNA_hydro_CS