Ggra3346.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3346.t1
Unique NameGgra3346.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length232
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:74352..75047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog64471.sync_0312
Preferred namepth
PFAMsPept_tRNA_hydro
Max annot lvl1117|Cyanobacteria
KEGG koko:K01056
GOsGO:0003674,GO:0003824,GO:0004045,GO:0016787,GO:0016788,GO:0052689,GO:0140098,GO:0140101
Evalue2.02e-46
EggNOG OGsCOG0193@1|root,COG0193@2|Bacteria,1G0D0@1117|Cyanobacteria,1GZ78@1129|Synechococcus
EC3.1.1.29
DescriptionThe natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis
COG categoryJ
BRITEko00000,ko01000,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3346Ggra3346Gracilaria gracilis GNS1m malegenetig00000189_pilon 74352..75047 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3346.t1.start1Ggra3346.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000189_pilon 74352..74354 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3346.t1.CDS1Ggra3346.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000189_pilon 74352..75047 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3346.t1.exon1Ggra3346.t1.exon1Gracilaria gracilis GNS1m maleexontig00000189_pilon 74352..75047 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3346.t1.stop1Ggra3346.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000189_pilon 75045..75047 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3346.t1Ggra3346.t1Gracilaria gracilis GNS1m malepolypeptidetig00000189_pilon 74352..75047 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3346.t1 ID=Ggra3346.t1|Name=Ggra3346.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=232bp
MRCSTTGTPSSSSESKQPSPPPKTPNGRPKPPERGDTLLVVGLGNPGPRF
ENTRHNVGFSLLDQYAVRHATGKFRKENSVQGEITRFHLYNKKIMLLKPT
TFMNASGRAVRAALKYLNAPVAAMLVVVDDMSLPIGDLRLRAKGSAGGHN
GLKSIQQNVGGMSYARLRVGVGSPRLGAQEWADFVLAPFSRGDRKIMEEV
EWDVMEAIDFWVQEPSLEKVQNQIALTKQKR*
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spliced messenger RNA

>Ggra3346.t1 ID=Ggra3346.t1|Name=Ggra3346.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=696bp|location=Sequence derived from alignment at tig00000189_pilon:74352..75047+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGATGCTCAACTACAGGCACTCCCAGTTCATCCAGTGAGTCGAAACA
GCCGTCCCCACCACCGAAAACCCCCAATGGTCGACCGAAACCCCCAGAAC
GCGGTGATACGCTCCTTGTCGTGGGCTTAGGAAACCCAGGCCCCCGTTTT
GAAAACACCAGGCATAATGTAGGTTTCAGCTTACTAGATCAGTATGCCGT
CCGCCATGCTACTGGAAAGTTCAGAAAGGAAAACAGTGTACAGGGAGAGA
TTACCCGGTTCCATCTATACAACAAGAAAATCATGCTGCTCAAGCCAACA
ACCTTTATGAATGCATCCGGTCGAGCTGTGCGGGCAGCTCTCAAGTATTT
AAACGCCCCTGTGGCCGCAATGCTTGTAGTAGTGGACGATATGTCCCTGC
CAATTGGAGACCTTAGGTTGCGCGCCAAGGGAAGTGCTGGAGGGCATAAT
GGATTGAAGAGCATTCAGCAGAACGTTGGTGGAATGAGTTATGCCAGACT
GCGTGTTGGCGTTGGTTCCCCGAGACTTGGTGCTCAAGAGTGGGCTGATT
TCGTCCTCGCGCCGTTTTCGAGAGGAGATAGGAAGATTATGGAAGAAGTA
GAGTGGGATGTGATGGAAGCCATTGACTTCTGGGTGCAGGAACCCAGTTT
AGAAAAAGTACAGAACCAGATCGCGTTAACGAAACAGAAGCGATAA
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protein sequence of Ggra3346.t1

>Ggra3346.t1 ID=Ggra3346.t1|Name=Ggra3346.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=232bp
MRCSTTGTPSSSSESKQPSPPPKTPNGRPKPPERGDTLLVVGLGNPGPRF
ENTRHNVGFSLLDQYAVRHATGKFRKENSVQGEITRFHLYNKKIMLLKPT
TFMNASGRAVRAALKYLNAPVAAMLVVVDDMSLPIGDLRLRAKGSAGGHN
GLKSIQQNVGGMSYARLRVGVGSPRLGAQEWADFVLAPFSRGDRKIMEEV
EWDVMEAIDFWVQEPSLEKVQNQIALTKQKR*
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mRNA from alignment at tig00000189_pilon:74352..75047+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3346.t1 ID=Ggra3346.t1|Name=Ggra3346.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=696bp|location=Sequence derived from alignment at tig00000189_pilon:74352..75047+ (Gracilaria gracilis GNS1m male)
ATGCGATGCTCAACTACAGGCACTCCCAGTTCATCCAGTGAGTCGAAACA
GCCGTCCCCACCACCGAAAACCCCCAATGGTCGACCGAAACCCCCAGAAC
GCGGTGATACGCTCCTTGTCGTGGGCTTAGGAAACCCAGGCCCCCGTTTT
GAAAACACCAGGCATAATGTAGGTTTCAGCTTACTAGATCAGTATGCCGT
CCGCCATGCTACTGGAAAGTTCAGAAAGGAAAACAGTGTACAGGGAGAGA
TTACCCGGTTCCATCTATACAACAAGAAAATCATGCTGCTCAAGCCAACA
ACCTTTATGAATGCATCCGGTCGAGCTGTGCGGGCAGCTCTCAAGTATTT
AAACGCCCCTGTGGCCGCAATGCTTGTAGTAGTGGACGATATGTCCCTGC
CAATTGGAGACCTTAGGTTGCGCGCCAAGGGAAGTGCTGGAGGGCATAAT
GGATTGAAGAGCATTCAGCAGAACGTTGGTGGAATGAGTTATGCCAGACT
GCGTGTTGGCGTTGGTTCCCCGAGACTTGGTGCTCAAGAGTGGGCTGATT
TCGTCCTCGCGCCGTTTTCGAGAGGAGATAGGAAGATTATGGAAGAAGTA
GAGTGGGATGTGATGGAAGCCATTGACTTCTGGGTGCAGGAACCCAGTTT
AGAAAAAGTACAGAACCAGATCGCGTTAACGAAACAGAAGCGATAA
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Coding sequence (CDS) from alignment at tig00000189_pilon:74352..75047+

>Ggra3346.t1 ID=Ggra3346.t1|Name=Ggra3346.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=696bp|location=Sequence derived from alignment at tig00000189_pilon:74352..75047+ (Gracilaria gracilis GNS1m male)
ATGCGATGCTCAACTACAGGCACTCCCAGTTCATCCAGTGAGTCGAAACA
GCCGTCCCCACCACCGAAAACCCCCAATGGTCGACCGAAACCCCCAGAAC
GCGGTGATACGCTCCTTGTCGTGGGCTTAGGAAACCCAGGCCCCCGTTTT
GAAAACACCAGGCATAATGTAGGTTTCAGCTTACTAGATCAGTATGCCGT
CCGCCATGCTACTGGAAAGTTCAGAAAGGAAAACAGTGTACAGGGAGAGA
TTACCCGGTTCCATCTATACAACAAGAAAATCATGCTGCTCAAGCCAACA
ACCTTTATGAATGCATCCGGTCGAGCTGTGCGGGCAGCTCTCAAGTATTT
AAACGCCCCTGTGGCCGCAATGCTTGTAGTAGTGGACGATATGTCCCTGC
CAATTGGAGACCTTAGGTTGCGCGCCAAGGGAAGTGCTGGAGGGCATAAT
GGATTGAAGAGCATTCAGCAGAACGTTGGTGGAATGAGTTATGCCAGACT
GCGTGTTGGCGTTGGTTCCCCGAGACTTGGTGCTCAAGAGTGGGCTGATT
TCGTCCTCGCGCCGTTTTCGAGAGGAGATAGGAAGATTATGGAAGAAGTA
GAGTGGGATGTGATGGAAGCCATTGACTTCTGGGTGCAGGAACCCAGTTT
AGAAAAAGTACAGAACCAGATCGCGTTAACGAAACAGAAGCGATAA
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