Ggra3302.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra3302.t1
Unique NameGgra3302.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length304
Homology
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BLAST of Ggra3302.t1 vs. uniprot
Match: A0A2V3ISF7 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISF7_9FLOR)

HSP 1 Score: 196 bits (497), Expect = 3.980e-58
Identity = 103/165 (62.42%), Postives = 124/165 (75.15%), Query Frame = 0 
Query:   26 AHPISKSCASTCDFHLCSPAKLSLLSVPSSPATPPICLEGRPVHVTSSGEAFVRSGASYYALISRTAPASTSKRCAPNFFTTFPTASGAAAVGFQPSAGTDYSFLAGKCVSLPLNSVQLVSPSGAVLHEMELEGRPLKDCVGFQVDDAVPPPPQAAEYHVGSAVP 190
            AHPI+K+C STCDF LCSPAK+SLLS     A+PPICLEGRPV VT +GEAFVRSGASYYAL+SR    + SK+C+P+FF T+    GA+ VG     GTD SFLAGKCV+LPL  VQL+S +G  +HE++LEGRPLKDCVGF+VD  VP   Q+A Y+   A P
Sbjct:   22 AHPITKNCKSTCDFDLCSPAKVSLLSSAGESASPPICLEGRPVGVTKTGEAFVRSGASYYALLSR----ADSKKCSPHFFKTYKMDGGASGVGVDGKPGTDVSFLAGKCVALPLEQVQLISHAGTAVHELKLEGRPLKDCVGFEVDWDVP---QSASYYKVEAGP 179
The following BLAST results are available for this feature:
BLAST of Ggra3302.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3ISF73.980e-5862.42Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 200..303
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 23..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..303
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..22
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000851_piloncontigtig00000851_pilon:631937..632848 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3302.t1Ggra3302.t1Gracilaria gracilis GNS1m malemRNAtig00000851_pilon 631937..632848 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra3302.t1 ID=Ggra3302.t1|Name=Ggra3302.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=304bp
MRNAFSFFAVALVGASVVSLLVVGHAHPISKSCASTCDFHLCSPAKLSLL
SVPSSPATPPICLEGRPVHVTSSGEAFVRSGASYYALISRTAPASTSKRC
APNFFTTFPTASGAAAVGFQPSAGTDYSFLAGKCVSLPLNSVQLVSPSGA
VLHEMELEGRPLKDCVGFQVDDAVPPPPQAAEYHVGSAVPVAAGTPAPAL
ANDDVSHGGRSALDARKRIMQTLGGGRGGGRGGGADHGGSAAHTPAADAE
AAEVDDDGEPAPSAEPAELLEEPSASAEPAATEEAEAGSDEDNELQEAVP
FSV*
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