Ggra3302.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3302.t1
Unique NameGgra3302.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length304
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000851_piloncontigtig00000851_pilon:631937..632848 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3302Ggra3302Gracilaria gracilis GNS1m malegenetig00000851_pilon 631937..632848 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3302.t1.stop1Ggra3302.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000851_pilon 631937..631939 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3302.t1.CDS1Ggra3302.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000851_pilon 631937..632848 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3302.t1.exon1Ggra3302.t1.exon1Gracilaria gracilis GNS1m maleexontig00000851_pilon 631937..632848 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3302.t1.start1Ggra3302.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000851_pilon 632846..632848 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3302.t1Ggra3302.t1Gracilaria gracilis GNS1m malepolypeptidetig00000851_pilon 631937..632848 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3302.t1 ID=Ggra3302.t1|Name=Ggra3302.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=304bp
MRNAFSFFAVALVGASVVSLLVVGHAHPISKSCASTCDFHLCSPAKLSLL
SVPSSPATPPICLEGRPVHVTSSGEAFVRSGASYYALISRTAPASTSKRC
APNFFTTFPTASGAAAVGFQPSAGTDYSFLAGKCVSLPLNSVQLVSPSGA
VLHEMELEGRPLKDCVGFQVDDAVPPPPQAAEYHVGSAVPVAAGTPAPAL
ANDDVSHGGRSALDARKRIMQTLGGGRGGGRGGGADHGGSAAHTPAADAE
AAEVDDDGEPAPSAEPAELLEEPSASAEPAATEEAEAGSDEDNELQEAVP
FSV*
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spliced messenger RNA

>Ggra3302.t1 ID=Ggra3302.t1|Name=Ggra3302.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00000851_pilon:631937..632848- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTAACGCGTTCTCGTTCTTCGCCGTCGCGCTAGTCGGCGCATCTGT
TGTATCTCTGCTCGTGGTGGGACACGCGCATCCCATCTCCAAGTCGTGCG
CGTCGACGTGCGACTTTCACCTATGCTCGCCCGCTAAGCTGTCTCTGCTG
TCTGTGCCTTCGTCGCCCGCCACGCCGCCCATCTGTCTGGAGGGCCGTCC
CGTGCACGTCACGTCCAGCGGGGAGGCGTTCGTGCGCTCCGGCGCGTCGT
ACTACGCGCTGATCAGTCGCACCGCGCCGGCATCGACTTCCAAACGTTGC
GCGCCCAACTTCTTCACGACGTTCCCCACGGCGTCCGGCGCGGCCGCCGT
GGGCTTCCAACCATCCGCCGGCACCGATTACTCGTTCCTGGCAGGCAAGT
GCGTGTCGCTGCCGCTCAATAGCGTGCAGCTGGTGTCGCCGTCCGGCGCA
GTGCTGCACGAGATGGAGCTGGAAGGCCGCCCGTTGAAGGACTGTGTGGG
CTTCCAGGTGGACGACGCCGTGCCACCTCCGCCGCAGGCGGCCGAGTACC
ACGTGGGCTCCGCGGTGCCGGTGGCAGCCGGCACGCCCGCGCCAGCGCTC
GCTAATGACGACGTGTCGCATGGCGGCCGCTCTGCGCTGGACGCGCGCAA
ACGCATCATGCAGACGCTCGGCGGCGGGAGAGGCGGCGGGAGAGGCGGCG
GCGCCGACCACGGCGGCAGTGCGGCGCACACGCCCGCTGCCGACGCGGAG
GCTGCCGAAGTGGACGATGACGGCGAGCCGGCGCCGTCCGCCGAGCCCGC
GGAGCTGCTGGAGGAGCCCAGCGCGTCGGCGGAGCCCGCCGCCACGGAAG
AGGCGGAGGCGGGCAGCGACGAGGACAACGAGCTGCAGGAGGCAGTGCCC
TTCAGCGTGTGA
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protein sequence of Ggra3302.t1

>Ggra3302.t1 ID=Ggra3302.t1|Name=Ggra3302.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=304bp
MRNAFSFFAVALVGASVVSLLVVGHAHPISKSCASTCDFHLCSPAKLSLL
SVPSSPATPPICLEGRPVHVTSSGEAFVRSGASYYALISRTAPASTSKRC
APNFFTTFPTASGAAAVGFQPSAGTDYSFLAGKCVSLPLNSVQLVSPSGA
VLHEMELEGRPLKDCVGFQVDDAVPPPPQAAEYHVGSAVPVAAGTPAPAL
ANDDVSHGGRSALDARKRIMQTLGGGRGGGRGGGADHGGSAAHTPAADAE
AAEVDDDGEPAPSAEPAELLEEPSASAEPAATEEAEAGSDEDNELQEAVP
FSV*
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mRNA from alignment at tig00000851_pilon:631937..632848-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3302.t1 ID=Ggra3302.t1|Name=Ggra3302.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00000851_pilon:631937..632848- (Gracilaria gracilis GNS1m male)
ATGCGTAACGCGTTCTCGTTCTTCGCCGTCGCGCTAGTCGGCGCATCTGT
TGTATCTCTGCTCGTGGTGGGACACGCGCATCCCATCTCCAAGTCGTGCG
CGTCGACGTGCGACTTTCACCTATGCTCGCCCGCTAAGCTGTCTCTGCTG
TCTGTGCCTTCGTCGCCCGCCACGCCGCCCATCTGTCTGGAGGGCCGTCC
CGTGCACGTCACGTCCAGCGGGGAGGCGTTCGTGCGCTCCGGCGCGTCGT
ACTACGCGCTGATCAGTCGCACCGCGCCGGCATCGACTTCCAAACGTTGC
GCGCCCAACTTCTTCACGACGTTCCCCACGGCGTCCGGCGCGGCCGCCGT
GGGCTTCCAACCATCCGCCGGCACCGATTACTCGTTCCTGGCAGGCAAGT
GCGTGTCGCTGCCGCTCAATAGCGTGCAGCTGGTGTCGCCGTCCGGCGCA
GTGCTGCACGAGATGGAGCTGGAAGGCCGCCCGTTGAAGGACTGTGTGGG
CTTCCAGGTGGACGACGCCGTGCCACCTCCGCCGCAGGCGGCCGAGTACC
ACGTGGGCTCCGCGGTGCCGGTGGCAGCCGGCACGCCCGCGCCAGCGCTC
GCTAATGACGACGTGTCGCATGGCGGCCGCTCTGCGCTGGACGCGCGCAA
ACGCATCATGCAGACGCTCGGCGGCGGGAGAGGCGGCGGGAGAGGCGGCG
GCGCCGACCACGGCGGCAGTGCGGCGCACACGCCCGCTGCCGACGCGGAG
GCTGCCGAAGTGGACGATGACGGCGAGCCGGCGCCGTCCGCCGAGCCCGC
GGAGCTGCTGGAGGAGCCCAGCGCGTCGGCGGAGCCCGCCGCCACGGAAG
AGGCGGAGGCGGGCAGCGACGAGGACAACGAGCTGCAGGAGGCAGTGCCC
TTCAGCGTGTGA
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Coding sequence (CDS) from alignment at tig00000851_pilon:631937..632848-

>Ggra3302.t1 ID=Ggra3302.t1|Name=Ggra3302.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=912bp|location=Sequence derived from alignment at tig00000851_pilon:631937..632848- (Gracilaria gracilis GNS1m male)
ATGCGTAACGCGTTCTCGTTCTTCGCCGTCGCGCTAGTCGGCGCATCTGT
TGTATCTCTGCTCGTGGTGGGACACGCGCATCCCATCTCCAAGTCGTGCG
CGTCGACGTGCGACTTTCACCTATGCTCGCCCGCTAAGCTGTCTCTGCTG
TCTGTGCCTTCGTCGCCCGCCACGCCGCCCATCTGTCTGGAGGGCCGTCC
CGTGCACGTCACGTCCAGCGGGGAGGCGTTCGTGCGCTCCGGCGCGTCGT
ACTACGCGCTGATCAGTCGCACCGCGCCGGCATCGACTTCCAAACGTTGC
GCGCCCAACTTCTTCACGACGTTCCCCACGGCGTCCGGCGCGGCCGCCGT
GGGCTTCCAACCATCCGCCGGCACCGATTACTCGTTCCTGGCAGGCAAGT
GCGTGTCGCTGCCGCTCAATAGCGTGCAGCTGGTGTCGCCGTCCGGCGCA
GTGCTGCACGAGATGGAGCTGGAAGGCCGCCCGTTGAAGGACTGTGTGGG
CTTCCAGGTGGACGACGCCGTGCCACCTCCGCCGCAGGCGGCCGAGTACC
ACGTGGGCTCCGCGGTGCCGGTGGCAGCCGGCACGCCCGCGCCAGCGCTC
GCTAATGACGACGTGTCGCATGGCGGCCGCTCTGCGCTGGACGCGCGCAA
ACGCATCATGCAGACGCTCGGCGGCGGGAGAGGCGGCGGGAGAGGCGGCG
GCGCCGACCACGGCGGCAGTGCGGCGCACACGCCCGCTGCCGACGCGGAG
GCTGCCGAAGTGGACGATGACGGCGAGCCGGCGCCGTCCGCCGAGCCCGC
GGAGCTGCTGGAGGAGCCCAGCGCGTCGGCGGAGCCCGCCGCCACGGAAG
AGGCGGAGGCGGGCAGCGACGAGGACAACGAGCTGCAGGAGGCAGTGCCC
TTCAGCGTGTGA
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