Ggra3258.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra3258.t1
Unique NameGgra3258.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length311
Homology
BLAST of Ggra3258.t1 vs. uniprot
Match: A0A2V3J8I9 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J8I9_9FLOR)

HSP 1 Score: 432 bits (1110), Expect = 1.370e-144
Identity = 216/346 (62.43%), Postives = 256/346 (73.99%), Query Frame = 0
Query:    1 MLVYVSSVQLTPNSSDWSAFQINYNTNFGSGGYLLDNVTALAHRHIFYRAQEEVEGRYAATSQGVGLMEKIFQRSQHFQSLWNDFFKEWTFPSLTTADVHEVFNRVHAFLQIFIDSTSDVSQRKLLRELHRSKSKRAFFIHTQYGL------------------------------------DPFANDMVILEKLNRSWPPGDANTKDNAMKTVEFYNFMRYNGKHIHNPLTELVNPRMRHNMYVKMDYVVRSSLTPRIISTTSNYWKAMRVTLVPNAEIMYLVNDPSFINMKGMVGVHTRSRTIENDIKGASEEFHVNGSRVTDHWRRITGLKKFENEITRLSLR 310
            ML+Y+S++QLTPNSSDWS FQINY TN+G+GGY LDNV AL  RHIFYRA + VEGRYA+ S GV L+  +F+ +  F+S W  + ++WTFPSLTT+++ +V NRV+A   IFI+  SD S RKLLREL RS SKRAFFIH QYGL                                    D FAND+V++EKLN +WPPGDA+TKD+AM+TV+FYNFMR+NGKHIHNPLTELVNPR   ++Y K  YVVRSS TPRIISTTS YWK MR TLVPNAEIMYLV DPSF N++ MVGVH RSRTIENDIKG SEEF+ N SRVTDHWRR+TGLK FE +I RL++R
Sbjct:  256 MLIYLSNLQLTPNSSDWSEFQINYYTNYGAGGYPLDNVAALVDRHIFYRAHQPVEGRYASVSPGVMLIPSLFKPNPAFKSAWQHYLEDWTFPSLTTSEIRDVLNRVYAVPHIFIEGMSDFSCRKLLRELDRSTSKRAFFIHAQYGLGNRLRALGSAMAIAKITGRVLVLVWEADVHLNCRFSDLFANDIVLVEKLNMNWPPGDASTKDHAMRTVDFYNFMRFNGKHIHNPLTELVNPRTGRHVYAKTAYVVRSSFTPRIISTTSKYWKTMRETLVPNAEIMYLVQDPSFTNIRRMVGVHIRSRTIENDIKGVSEEFYGNSSRVTDHWRRVTGLKTFEAKIMRLNVR 601          
BLAST of Ggra3258.t1 vs. uniprot
Match: R7Q1T2 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q1T2_CHOCR)

HSP 1 Score: 382 bits (980), Expect = 1.100e-125
Identity = 195/346 (56.36%), Postives = 238/346 (68.79%), Query Frame = 0
Query:    1 MLVYVSSVQLTPNSSDWSAFQINYNTNFGSGGYLLDNVTALAHRHIFYRAQEEVEGRYAATSQGVGLMEKIFQRSQHFQSLWNDFFKEWTFPSLTTADVHEVFNRVHAFLQIFIDSTSDVSQRKLLRELHRSKSKRAFFIHTQYGL------------------------------------DPFANDMVILEKLNRSWPPGDANTKDNAMKTVEFYNFMRYNGKHIHNPLTELVNPRMRHNMYVKMDYVVRSSLTPRIISTTSNYWKAMRVTLVPNAEIMYLVNDPSFINMKGMVGVHTRSRTIENDIKGASEEFHVNGSRVTDHWRRITGLKKFENEITRLSLR 310
            ML  V S+ L+PN ++WS FQINY T  GSGG+ LD+V ALA RHIFYR+Q++VEGRYA+ S GV  M          Q+ W +F KEWT  +L   +V +V NRV+    +FI+  SD SQRKLLR L +S SKRAFFIH QYGL                                    D FAND++ ++KLN +WPPGD+NTKD AM+TV+FYNFMR+ GKHIHNPL +LVNPR   ++Y K  YVVRSS  PRIISTTS+YW+ MR  L+P AEIM+LV+DPSFIN+KGMVGVH RSRTI+ DIKG SEEF+ NGSR TDHWRR+TGLK FE++I RL+LR
Sbjct:  201 MLTSVDSLHLSPNLTNWSEFQINYYTKTGSGGHPLDSVAALATRHIFYRSQQKVEGRYASISPGVMNMPNFLTPGSTIQAAWYNFVKEWTLSNLDIDEVADVLNRVYGVPLVFIEGMSDDSQRKLLRGLSQSTSKRAFFIHAQYGLGNRLRALGSAMAVARVTGRVLVLIWEPDVHLNCRFSDLFANDLITIDKLNMNWPPGDSNTKDYAMRTVDFYNFMRFQGKHIHNPLKQLVNPRTGRHVYAKTAYVVRSSFAPRIISTTSSYWRVMREQLIPTAEIMHLVHDPSFINIKGMVGVHIRSRTIDKDIKGVSEEFYGNGSRTTDHWRRLTGLKTFEDKILRLNLR 546          
BLAST of Ggra3258.t1 vs. uniprot
Match: A0A7S1ESD2 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ESD2_9RHOD)

HSP 1 Score: 61.2 bits (147), Expect = 8.430e-7
Identity = 42/152 (27.63%), Postives = 72/152 (47.37%), Query Frame = 0
Query:  163 WPPGDANTKDNAMKTVEFYNFMRYNGKHIHNPLT-ELVNPRMRHNMYVKMDYVVRSSLTPRIISTTSNYWK---AMRVTLVPNAEIMYLVNDPSFINMKGMVGVHTRSRTIENDIKGA---SEEFHVNGSRVTDHWRRITGLKKFENEITRL 307
            WP   A+  D A   ++FYN+M   G   HN    +++      ++Y K  YV+       +      +W+   AM  TLVP   +   +       +  MVGVH RSR+++ DIK     S+E+   G++  D+WR+++    F + + +L
Sbjct:  328 WPFAGASGWDKAWDNIDFYNYMEMEG---HNAQKGQVIRDVPGKHLYFKSAYVLE------VADKQLTFWEKDSAMLQTLVPIPMVREQLKLAMDQGLGSMVGVHIRSRSLQEDIKSVQDFSKEYGAEGAKTMDYWRKMSSPNTFIHRMQQL 470          
The following BLAST results are available for this feature:
BLAST of Ggra3258.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J8I91.370e-14462.43Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q1T21.100e-12556.36Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S1ESD28.430e-727.63Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 297..310

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000851_piloncontigtig00000851_pilon:43243..44283 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3258.t1Ggra3258.t1Gracilaria gracilis GNS1m malemRNAtig00000851_pilon 43243..44283 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra3258.t1 ID=Ggra3258.t1|Name=Ggra3258.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=311bp
MLVYVSSVQLTPNSSDWSAFQINYNTNFGSGGYLLDNVTALAHRHIFYRA
QEEVEGRYAATSQGVGLMEKIFQRSQHFQSLWNDFFKEWTFPSLTTADVH
EVFNRVHAFLQIFIDSTSDVSQRKLLRELHRSKSKRAFFIHTQYGLDPFA
NDMVILEKLNRSWPPGDANTKDNAMKTVEFYNFMRYNGKHIHNPLTELVN
PRMRHNMYVKMDYVVRSSLTPRIISTTSNYWKAMRVTLVPNAEIMYLVND
PSFINMKGMVGVHTRSRTIENDIKGASEEFHVNGSRVTDHWRRITGLKKF
ENEITRLSLR*
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