Ggra3258.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3258.t1
Unique NameGgra3258.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length311
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000851_piloncontigtig00000851_pilon:43243..44283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3258Ggra3258Gracilaria gracilis GNS1m malegenetig00000851_pilon 43243..44283 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3258.t1Ggra3258.t1Gracilaria gracilis GNS1m malepolypeptidetig00000851_pilon 43243..44283 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3258.t1.start1Ggra3258.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000851_pilon 43243..43245 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3258.t1.CDS1Ggra3258.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000851_pilon 43243..43681 +
Ggra3258.t1.CDS2Ggra3258.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000851_pilon 43790..44283 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3258.t1.exon1Ggra3258.t1.exon1Gracilaria gracilis GNS1m maleexontig00000851_pilon 43243..43681 +
Ggra3258.t1.exon2Ggra3258.t1.exon2Gracilaria gracilis GNS1m maleexontig00000851_pilon 43790..44283 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3258.t1.intron1Ggra3258.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000851_pilon 43682..43789 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3258.t1.stop1Ggra3258.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000851_pilon 44281..44283 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3258.t1 ID=Ggra3258.t1|Name=Ggra3258.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=311bp
MLVYVSSVQLTPNSSDWSAFQINYNTNFGSGGYLLDNVTALAHRHIFYRA
QEEVEGRYAATSQGVGLMEKIFQRSQHFQSLWNDFFKEWTFPSLTTADVH
EVFNRVHAFLQIFIDSTSDVSQRKLLRELHRSKSKRAFFIHTQYGLDPFA
NDMVILEKLNRSWPPGDANTKDNAMKTVEFYNFMRYNGKHIHNPLTELVN
PRMRHNMYVKMDYVVRSSLTPRIISTTSNYWKAMRVTLVPNAEIMYLVND
PSFINMKGMVGVHTRSRTIENDIKGASEEFHVNGSRVTDHWRRITGLKKF
ENEITRLSLR*
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spliced messenger RNA

>Ggra3258.t1 ID=Ggra3258.t1|Name=Ggra3258.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=933bp|location=Sequence derived from alignment at tig00000851_pilon:43243..44283+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGTGTATGTCAGTTCGGTGCAGCTCACGCCCAACTCTTCAGACTG
GAGTGCATTCCAGATCAACTACAATACAAACTTTGGGTCTGGAGGCTATC
TCCTCGACAACGTCACTGCACTTGCTCATCGCCATATTTTTTACCGCGCC
CAGGAAGAGGTCGAAGGAAGGTACGCCGCCACATCACAAGGAGTAGGGCT
CATGGAAAAAATATTCCAACGGAGTCAACATTTCCAATCTCTCTGGAACG
ACTTCTTTAAGGAATGGACTTTTCCGAGCTTGACTACTGCAGATGTTCAC
GAAGTTTTCAATCGAGTTCACGCTTTTCTTCAAATTTTCATCGATAGCAC
GTCAGATGTTTCTCAAAGAAAGCTTTTACGCGAGTTGCACCGGTCCAAAT
CTAAGCGCGCATTTTTCATACATACTCAGTATGGGTTGGATCCATTTGCG
AATGATATGGTTATCCTGGAAAAGTTGAACAGGAGTTGGCCTCCAGGTGA
TGCCAATACGAAAGACAACGCCATGAAAACAGTTGAATTCTACAATTTTA
TGCGCTACAATGGCAAGCATATTCACAATCCACTCACAGAACTGGTGAAT
CCAAGAATGAGACATAATATGTATGTGAAGATGGATTATGTCGTGCGCTC
CAGCCTCACTCCTCGAATCATATCTACAACCTCCAATTATTGGAAGGCGA
TGCGTGTTACGCTTGTACCAAATGCAGAGATTATGTATCTCGTGAATGAC
CCATCTTTCATAAATATGAAGGGCATGGTTGGTGTGCATACCAGGTCGCG
AACAATCGAAAATGATATCAAAGGTGCTAGTGAGGAGTTCCATGTAAACG
GTTCTAGAGTTACCGATCACTGGCGTCGAATAACAGGGTTAAAAAAGTTT
GAGAACGAGATCACGCGCTTAAGCCTGCGGTAA
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protein sequence of Ggra3258.t1

>Ggra3258.t1 ID=Ggra3258.t1|Name=Ggra3258.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=311bp
MLVYVSSVQLTPNSSDWSAFQINYNTNFGSGGYLLDNVTALAHRHIFYRA
QEEVEGRYAATSQGVGLMEKIFQRSQHFQSLWNDFFKEWTFPSLTTADVH
EVFNRVHAFLQIFIDSTSDVSQRKLLRELHRSKSKRAFFIHTQYGLDPFA
NDMVILEKLNRSWPPGDANTKDNAMKTVEFYNFMRYNGKHIHNPLTELVN
PRMRHNMYVKMDYVVRSSLTPRIISTTSNYWKAMRVTLVPNAEIMYLVND
PSFINMKGMVGVHTRSRTIENDIKGASEEFHVNGSRVTDHWRRITGLKKF
ENEITRLSLR*
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mRNA from alignment at tig00000851_pilon:43243..44283+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3258.t1 ID=Ggra3258.t1|Name=Ggra3258.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1041bp|location=Sequence derived from alignment at tig00000851_pilon:43243..44283+ (Gracilaria gracilis GNS1m male)
ATGCTTGTGTATGTCAGTTCGGTGCAGCTCACGCCCAACTCTTCAGACTG
GAGTGCATTCCAGATCAACTACAATACAAACTTTGGGTCTGGAGGCTATC
TCCTCGACAACGTCACTGCACTTGCTCATCGCCATATTTTTTACCGCGCC
CAGGAAGAGGTCGAAGGAAGGTACGCCGCCACATCACAAGGAGTAGGGCT
CATGGAAAAAATATTCCAACGGAGTCAACATTTCCAATCTCTCTGGAACG
ACTTCTTTAAGGAATGGACTTTTCCGAGCTTGACTACTGCAGATGTTCAC
GAAGTTTTCAATCGAGTTCACGCTTTTCTTCAAATTTTCATCGATAGCAC
GTCAGATGTTTCTCAAAGAAAGCTTTTACGCGAGTTGCACCGGTCCAAAT
CTAAGCGCGCATTTTTCATACATACTCAGTATGGGTTGGGTAATCGCCTG
AGAGCGTTTGGATCTGCAATGGATATTTCAAAAGAGACTTGCCCTGTCTT
GGTTCTGATATGAGAACCTTATGTTTACCTCAACTGTCGCTTCTCAGATC
CATTTGCGAATGATATGGTTATCCTGGAAAAGTTGAACAGGAGTTGGCCT
CCAGGTGATGCCAATACGAAAGACAACGCCATGAAAACAGTTGAATTCTA
CAATTTTATGCGCTACAATGGCAAGCATATTCACAATCCACTCACAGAAC
TGGTGAATCCAAGAATGAGACATAATATGTATGTGAAGATGGATTATGTC
GTGCGCTCCAGCCTCACTCCTCGAATCATATCTACAACCTCCAATTATTG
GAAGGCGATGCGTGTTACGCTTGTACCAAATGCAGAGATTATGTATCTCG
TGAATGACCCATCTTTCATAAATATGAAGGGCATGGTTGGTGTGCATACC
AGGTCGCGAACAATCGAAAATGATATCAAAGGTGCTAGTGAGGAGTTCCA
TGTAAACGGTTCTAGAGTTACCGATCACTGGCGTCGAATAACAGGGTTAA
AAAAGTTTGAGAACGAGATCACGCGCTTAAGCCTGCGGTAA
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Coding sequence (CDS) from alignment at tig00000851_pilon:43243..44283+

>Ggra3258.t1 ID=Ggra3258.t1|Name=Ggra3258.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=933bp|location=Sequence derived from alignment at tig00000851_pilon:43243..44283+ (Gracilaria gracilis GNS1m male)
ATGCTTGTGTATGTCAGTTCGGTGCAGCTCACGCCCAACTCTTCAGACTG
GAGTGCATTCCAGATCAACTACAATACAAACTTTGGGTCTGGAGGCTATC
TCCTCGACAACGTCACTGCACTTGCTCATCGCCATATTTTTTACCGCGCC
CAGGAAGAGGTCGAAGGAAGGTACGCCGCCACATCACAAGGAGTAGGGCT
CATGGAAAAAATATTCCAACGGAGTCAACATTTCCAATCTCTCTGGAACG
ACTTCTTTAAGGAATGGACTTTTCCGAGCTTGACTACTGCAGATGTTCAC
GAAGTTTTCAATCGAGTTCACGCTTTTCTTCAAATTTTCATCGATAGCAC
GTCAGATGTTTCTCAAAGAAAGCTTTTACGCGAGTTGCACCGGTCCAAAT
CTAAGCGCGCATTTTTCATACATACTCAGTATGGGTTGGATCCATTTGCG
AATGATATGGTTATCCTGGAAAAGTTGAACAGGAGTTGGCCTCCAGGTGA
TGCCAATACGAAAGACAACGCCATGAAAACAGTTGAATTCTACAATTTTA
TGCGCTACAATGGCAAGCATATTCACAATCCACTCACAGAACTGGTGAAT
CCAAGAATGAGACATAATATGTATGTGAAGATGGATTATGTCGTGCGCTC
CAGCCTCACTCCTCGAATCATATCTACAACCTCCAATTATTGGAAGGCGA
TGCGTGTTACGCTTGTACCAAATGCAGAGATTATGTATCTCGTGAATGAC
CCATCTTTCATAAATATGAAGGGCATGGTTGGTGTGCATACCAGGTCGCG
AACAATCGAAAATGATATCAAAGGTGCTAGTGAGGAGTTCCATGTAAACG
GTTCTAGAGTTACCGATCACTGGCGTCGAATAACAGGGTTAAAAAAGTTT
GAGAACGAGATCACGCGCTTAAGCCTGCGGTAA
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