Ggra3108.t2 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra3108.t2
Unique NameGgra3108.t2
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length374
Homology
[Close]
BLAST of Ggra3108.t2 vs. uniprot
Match: A0A2V3IMM6 (Protein aardvark n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMM6_9FLOR)

HSP 1 Score: 158 bits (400), Expect = 9.310e-40
Identity = 168/235 (71.49%), Postives = 192/235 (81.70%), Query Frame = 0 
Query:  139 VCQVMRKFEKRGQLAGKACAAIRYISFLAENRDRVSSEGGIEAVVNILKSHMADPKIVEHALLAIGNATFEHDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFNAANLDKVAQGDVTRLAEKALAMHPKHRGVQLQAGSLLDRLEEYQEGHFGADAGRASDHNPGRSGFLGLGRLRSRHK 373
            +CQ +  FEK+G++ GKACAAIRY+ FL ENRDRV SE G+EA+V ILK H  +  IVE+ALLAIGNATFEH+E         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX F+AA ++KVAQGD  RLAEKAL+MH KHRGVQLQAGSLLDRLE+Y +G       +++D+   RSG LG+ ++RS  K
Sbjct:  369 ICQALDTFEKQGKIVGKACAAIRYLCFLPENRDRVRSEKGMEAIVKILKVHCGERSIVENALLAIGNATFEHEENKAAVGRCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFSAAVIEKVAQGDAARLAEKALSMHQKHRGVQLQAGSLLDRLEDYMKGTIELGHTQSTDNGGNRSGILGIKKIRSWRK 603
[Close]
BLAST of Ggra3108.t2 vs. uniprot
Match: A0A1X6NKJ2 (Uncharacterized protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NKJ2_PORUM)

HSP 1 Score: 65.1 bits (157), Expect = 9.160e-8
Identity = 30/61 (49.18%), Postives = 42/61 (68.85%), Query Frame = 0 
Query:  150 GQLAGKACAAIRYISFLAENRDRVSSEGGIEAVVNILKSHMADPKIVEHALLAIGNATFEH 210
            G +  K CAA+RY+ FL +NRDRV++ GG++ +V  L   ++ PK VE  LLA+GNA F H
Sbjct:  491 GGVLEKGCAALRYLCFLPDNRDRVATAGGVDLLVAALGGPLSTPKAVESTLLALGNAIFGH 551
The following BLAST results are available for this feature:
BLAST of Ggra3108.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IMM69.310e-4071.49Protein aardvark n=1 Tax=Gracilariopsis chorda Tax... [more]
A0A1X6NKJ29.160e-849.18Uncharacterized protein (Fragment) n=1 Tax=Porphyr... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000225ArmadilloSMARTSM00185arm_5coord: 123..165
e-value: 370.0
score: 1.1
coord: 34..77
e-value: 7.9
score: 14.0
coord: 166..208
e-value: 0.47
score: 19.5
coord: 79..121
e-value: 2.1
score: 17.3
coord: 210..252
e-value: 0.42
score: 19.7
coord: 254..296
e-value: 430.0
score: 0.6
IPR000225ArmadilloPROSITEPS50176ARM_REPEATcoord: 177..221
score: 10.2024
IPR000225ArmadilloPROSITEPS50176ARM_REPEATcoord: 221..265
score: 8.8724
IPR000225ArmadilloPROSITEPS50176ARM_REPEATcoord: 46..91
score: 9.6074
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 2..343
e-value: 2.9E-45
score: 156.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 345..365
NoneNo IPR availablePANTHERPTHR22895UNCHARACTERIZEDcoord: 272..331
coord: 1..123
coord: 130..251
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 20..337

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000120_piloncontigtig00000120_pilon:163198..164319 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3108.t2Ggra3108.t2Gracilaria gracilis GNS1m malemRNAtig00000120_pilon 163198..164319 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra3108.t2 ID=Ggra3108.t2|Name=Ggra3108.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=374bp
MGGIAAICNGMLAHLNHQGMQARGSLALRNLSYNSELNHKIAGENGAAEA
LIKTIEEYPNDREVVHQSCVALANLSNTNEENRRRITRANGAQLLVKMME
MHPESVTVNDDCVSIIRNISVGNIEGQFEVGNCGGVARVCQVMRKFEKRG
QLAGKACAAIRYISFLAENRDRVSSEGGIEAVVNILKSHMADPKIVEHAL
LAIGNATFEHDENKTKVGRCGGIVEVIKVLEQHRLNAGIQEHGCRVLRNL
ADNCEFNSTLEAENGAIYAGSLALMGFPDNASVQEQACAMLLNITFNAAN
LDKVAQGDVTRLAEKALAMHPKHRGVQLQAGSLLDRLEEYQEGHFGADAG
RASDHNPGRSGFLGLGRLRSRHK*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000225Armadillo
IPR011989ARM-like
IPR016024ARM-type_fold