Ggra3108.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3108.t2
Unique NameGgra3108.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length374
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000120_piloncontigtig00000120_pilon:163198..164319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3108Ggra3108Gracilaria gracilis GNS1m malegenetig00000120_pilon 156023..164319 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3108.t2.start1Ggra3108.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000120_pilon 163198..163200 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3108.t2.CDS1Ggra3108.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000120_pilon 163198..164319 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3108.t2.exon1Ggra3108.t2.exon1Gracilaria gracilis GNS1m maleexontig00000120_pilon 163198..164319 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3108.t2.stop1Ggra3108.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000120_pilon 164317..164319 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3108.t2Ggra3108.t2Gracilaria gracilis GNS1m malepolypeptidetig00000120_pilon 163198..164319 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3108.t2 ID=Ggra3108.t2|Name=Ggra3108.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=374bp
MGGIAAICNGMLAHLNHQGMQARGSLALRNLSYNSELNHKIAGENGAAEA
LIKTIEEYPNDREVVHQSCVALANLSNTNEENRRRITRANGAQLLVKMME
MHPESVTVNDDCVSIIRNISVGNIEGQFEVGNCGGVARVCQVMRKFEKRG
QLAGKACAAIRYISFLAENRDRVSSEGGIEAVVNILKSHMADPKIVEHAL
LAIGNATFEHDENKTKVGRCGGIVEVIKVLEQHRLNAGIQEHGCRVLRNL
ADNCEFNSTLEAENGAIYAGSLALMGFPDNASVQEQACAMLLNITFNAAN
LDKVAQGDVTRLAEKALAMHPKHRGVQLQAGSLLDRLEEYQEGHFGADAG
RASDHNPGRSGFLGLGRLRSRHK*
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spliced messenger RNA

>Ggra3108.t2 ID=Ggra3108.t2|Name=Ggra3108.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1122bp|location=Sequence derived from alignment at tig00000120_pilon:163198..164319+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGGAATTGCTGCAATCTGCAATGGCATGCTTGCACACTTGAACCA
TCAAGGGATGCAAGCTCGTGGTTCGCTTGCTCTTCGAAACCTGTCTTATA
ACTCTGAGTTGAACCACAAAATCGCGGGGGAGAATGGAGCCGCAGAAGCA
TTGATCAAAACGATTGAAGAATACCCCAACGACCGCGAGGTTGTTCACCA
ATCTTGCGTTGCTCTGGCGAACTTGTCGAACACAAATGAGGAAAATAGAA
GGAGGATCACACGAGCAAACGGTGCTCAACTTCTGGTCAAAATGATGGAA
ATGCATCCCGAGTCAGTGACTGTGAATGATGACTGTGTTTCAATCATTCG
AAACATCTCTGTTGGAAACATCGAAGGTCAGTTTGAAGTCGGGAACTGCG
GTGGCGTGGCCAGAGTGTGTCAAGTAATGAGAAAGTTCGAGAAACGAGGT
CAGCTCGCAGGAAAAGCATGTGCTGCCATTCGATATATTTCTTTCCTCGC
AGAGAATCGAGATCGAGTCTCTTCGGAAGGGGGAATAGAAGCGGTTGTGA
ACATTCTCAAATCGCATATGGCTGACCCCAAAATTGTAGAGCATGCCTTA
CTGGCCATTGGGAACGCGACTTTTGAACACGATGAGAACAAGACCAAGGT
CGGGCGATGCGGAGGAATCGTCGAAGTTATCAAAGTCCTTGAACAACACC
GCTTGAATGCTGGAATTCAAGAGCACGGATGCAGAGTTCTTCGAAACTTA
GCCGATAACTGTGAGTTCAACAGTACCCTAGAAGCAGAGAACGGGGCGAT
CTACGCAGGAAGTTTAGCTTTGATGGGATTTCCCGATAATGCTTCCGTCC
AAGAGCAAGCATGTGCAATGCTGCTAAACATCACATTCAATGCGGCAAAC
TTAGACAAAGTGGCACAAGGAGATGTTACGAGGCTTGCAGAGAAGGCCTT
AGCGATGCATCCGAAACATCGCGGCGTCCAGTTACAAGCTGGAAGCCTTC
TGGATCGCCTGGAAGAGTATCAGGAAGGACACTTTGGTGCAGATGCTGGC
CGTGCGTCAGATCATAATCCAGGTCGTTCCGGCTTTCTTGGATTGGGAAG
ACTTCGCAGCAGGCACAAGTAA
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protein sequence of Ggra3108.t2

>Ggra3108.t2 ID=Ggra3108.t2|Name=Ggra3108.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=374bp
MGGIAAICNGMLAHLNHQGMQARGSLALRNLSYNSELNHKIAGENGAAEA
LIKTIEEYPNDREVVHQSCVALANLSNTNEENRRRITRANGAQLLVKMME
MHPESVTVNDDCVSIIRNISVGNIEGQFEVGNCGGVARVCQVMRKFEKRG
QLAGKACAAIRYISFLAENRDRVSSEGGIEAVVNILKSHMADPKIVEHAL
LAIGNATFEHDENKTKVGRCGGIVEVIKVLEQHRLNAGIQEHGCRVLRNL
ADNCEFNSTLEAENGAIYAGSLALMGFPDNASVQEQACAMLLNITFNAAN
LDKVAQGDVTRLAEKALAMHPKHRGVQLQAGSLLDRLEEYQEGHFGADAG
RASDHNPGRSGFLGLGRLRSRHK*
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mRNA from alignment at tig00000120_pilon:163198..164319+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3108.t2 ID=Ggra3108.t2|Name=Ggra3108.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1122bp|location=Sequence derived from alignment at tig00000120_pilon:163198..164319+ (Gracilaria gracilis GNS1m male)
ATGGGCGGAATTGCTGCAATCTGCAATGGCATGCTTGCACACTTGAACCA
TCAAGGGATGCAAGCTCGTGGTTCGCTTGCTCTTCGAAACCTGTCTTATA
ACTCTGAGTTGAACCACAAAATCGCGGGGGAGAATGGAGCCGCAGAAGCA
TTGATCAAAACGATTGAAGAATACCCCAACGACCGCGAGGTTGTTCACCA
ATCTTGCGTTGCTCTGGCGAACTTGTCGAACACAAATGAGGAAAATAGAA
GGAGGATCACACGAGCAAACGGTGCTCAACTTCTGGTCAAAATGATGGAA
ATGCATCCCGAGTCAGTGACTGTGAATGATGACTGTGTTTCAATCATTCG
AAACATCTCTGTTGGAAACATCGAAGGTCAGTTTGAAGTCGGGAACTGCG
GTGGCGTGGCCAGAGTGTGTCAAGTAATGAGAAAGTTCGAGAAACGAGGT
CAGCTCGCAGGAAAAGCATGTGCTGCCATTCGATATATTTCTTTCCTCGC
AGAGAATCGAGATCGAGTCTCTTCGGAAGGGGGAATAGAAGCGGTTGTGA
ACATTCTCAAATCGCATATGGCTGACCCCAAAATTGTAGAGCATGCCTTA
CTGGCCATTGGGAACGCGACTTTTGAACACGATGAGAACAAGACCAAGGT
CGGGCGATGCGGAGGAATCGTCGAAGTTATCAAAGTCCTTGAACAACACC
GCTTGAATGCTGGAATTCAAGAGCACGGATGCAGAGTTCTTCGAAACTTA
GCCGATAACTGTGAGTTCAACAGTACCCTAGAAGCAGAGAACGGGGCGAT
CTACGCAGGAAGTTTAGCTTTGATGGGATTTCCCGATAATGCTTCCGTCC
AAGAGCAAGCATGTGCAATGCTGCTAAACATCACATTCAATGCGGCAAAC
TTAGACAAAGTGGCACAAGGAGATGTTACGAGGCTTGCAGAGAAGGCCTT
AGCGATGCATCCGAAACATCGCGGCGTCCAGTTACAAGCTGGAAGCCTTC
TGGATCGCCTGGAAGAGTATCAGGAAGGACACTTTGGTGCAGATGCTGGC
CGTGCGTCAGATCATAATCCAGGTCGTTCCGGCTTTCTTGGATTGGGAAG
ACTTCGCAGCAGGCACAAGTAA
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Coding sequence (CDS) from alignment at tig00000120_pilon:163198..164319+

>Ggra3108.t2 ID=Ggra3108.t2|Name=Ggra3108.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1122bp|location=Sequence derived from alignment at tig00000120_pilon:163198..164319+ (Gracilaria gracilis GNS1m male)
ATGGGCGGAATTGCTGCAATCTGCAATGGCATGCTTGCACACTTGAACCA
TCAAGGGATGCAAGCTCGTGGTTCGCTTGCTCTTCGAAACCTGTCTTATA
ACTCTGAGTTGAACCACAAAATCGCGGGGGAGAATGGAGCCGCAGAAGCA
TTGATCAAAACGATTGAAGAATACCCCAACGACCGCGAGGTTGTTCACCA
ATCTTGCGTTGCTCTGGCGAACTTGTCGAACACAAATGAGGAAAATAGAA
GGAGGATCACACGAGCAAACGGTGCTCAACTTCTGGTCAAAATGATGGAA
ATGCATCCCGAGTCAGTGACTGTGAATGATGACTGTGTTTCAATCATTCG
AAACATCTCTGTTGGAAACATCGAAGGTCAGTTTGAAGTCGGGAACTGCG
GTGGCGTGGCCAGAGTGTGTCAAGTAATGAGAAAGTTCGAGAAACGAGGT
CAGCTCGCAGGAAAAGCATGTGCTGCCATTCGATATATTTCTTTCCTCGC
AGAGAATCGAGATCGAGTCTCTTCGGAAGGGGGAATAGAAGCGGTTGTGA
ACATTCTCAAATCGCATATGGCTGACCCCAAAATTGTAGAGCATGCCTTA
CTGGCCATTGGGAACGCGACTTTTGAACACGATGAGAACAAGACCAAGGT
CGGGCGATGCGGAGGAATCGTCGAAGTTATCAAAGTCCTTGAACAACACC
GCTTGAATGCTGGAATTCAAGAGCACGGATGCAGAGTTCTTCGAAACTTA
GCCGATAACTGTGAGTTCAACAGTACCCTAGAAGCAGAGAACGGGGCGAT
CTACGCAGGAAGTTTAGCTTTGATGGGATTTCCCGATAATGCTTCCGTCC
AAGAGCAAGCATGTGCAATGCTGCTAAACATCACATTCAATGCGGCAAAC
TTAGACAAAGTGGCACAAGGAGATGTTACGAGGCTTGCAGAGAAGGCCTT
AGCGATGCATCCGAAACATCGCGGCGTCCAGTTACAAGCTGGAAGCCTTC
TGGATCGCCTGGAAGAGTATCAGGAAGGACACTTTGGTGCAGATGCTGGC
CGTGCGTCAGATCATAATCCAGGTCGTTCCGGCTTTCTTGGATTGGGAAG
ACTTCGCAGCAGGCACAAGTAA
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