Ggra3096.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra3096.t1
Unique NameGgra3096.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length478
Homology
BLAST of Ggra3096.t1 vs. uniprot
Match: A0A2V3IMN6 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMN6_9FLOR)

HSP 1 Score: 474 bits (1219), Expect = 2.340e-161
Identity = 241/447 (53.91%), Postives = 318/447 (71.14%), Query Frame = 0
Query:    1 MVTVGVLAALINIIVLFVVAIADRALELIVRNFATSRLINHHRAPVVHDSDTWLPFLPRSVVKYHRHPAILCTVXXXXXXXXXXXXXXLGVDVSKTCAPAAETGRVISPGDITDKFTDLELSGTCFLMQSLEFDESPLQRVRAGIPRRLTGSECFSCIDENSPDIVSGCQVRHLEDIQPGQLKVSINTTDGPFKTLTSSFQETTGDQRKFEGCGDLTYNGHEVSTFLFHKLSDKRLWYFEYNDQEQLDIMRKIAPKQKGTPVTNTTKGPVHHFEINCETNALHGDNFSAVIRMYRTVQLENPITPAQLDSKTDLFDPLTPDAIYRAVLAAKIIDDEHDEDVLFYRYTSCGKYKWSFLFPMIICLVIIIALGAASHIFRANGFSSFQVPFNSRSWYDHARNLESVHSPQ---QEERKRKSGYFGNIFEELKLVDFGEDTMEHGHVVLS 444
            MV VG LAALIN+ +L VVA+ADRA+ELIVRNFATSRL++H + PVVHDSDTWLPFLPRSVVKY RHPAILCTV XXXX         LGVDVS TC+P    G VI+ G  ++ FTD+ELSGTCFL++S+EF E  L+ +RAGIPR+LTG+EC  C  E+S +I+SGC V++     P Q+++ +N+TDG FKTLT+ F+ET+     ++G GDLT+NG   STF+ H   +  L YFEYNDQ+ +  ++ IA  QKG P    TKG VH  EINC+TN L  + F+  +RMYRTVQLENPI PA+ +   DL++PLTPD++YRAVLAAK+IDD+H  D  +Y YTSCGKY W+F+ PM++CL +I+ LG  S +       ++ +PFNSR+WY+HA++L+   +P      E ++  GYF N+F+E++LV+ GE        VLS
Sbjct:    1 MVGVGGLAALINVAILLVVAVADRAIELIVRNFATSRLLSHGKVPVVHDSDTWLPFLPRSVVKYRRHPAILCTVLXXXXLITSELVTELGVDVSNTCSPELHRGAVIAKGPTSENFTDIELSGTCFLLRSMEFAEGSLKCLRAGIPRKLTGNECLKCAHEDS-EIISGCDVQYKRKFLPEQVEIEVNSTDGTFKTLTTLFKETSSGA-VYDGKGDLTFNGDTFSTFMIHYSEEGPLLYFEYNDQDHIRHLKDIANAQKGEPARERTKGNVHMSEINCKTNVLTNEVFARFVRMYRTVQLENPIFPAKFNDTADLYEPLTPDSLYRAVLAAKVIDDKHTPDATYYVYTSCGKYNWNFMLPMLVCLGVILILGLVSCMIGERMGETY-IPFNSRTWYEHAQDLDDPLTPYVGAPTESRKPKGYFANLFDEIQLVEEGEGQRPRRRFVLS 444          
BLAST of Ggra3096.t1 vs. uniprot
Match: A0A2V3IPN6 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPN6_9FLOR)

HSP 1 Score: 430 bits (1106), Expect = 2.820e-144
Identity = 225/454 (49.56%), Postives = 293/454 (64.54%), Query Frame = 0
Query:    1 MVTVGVLAALINIIVLFVVAIADRALELIVRNFATSRLINHHRAPVVHDSDTWLPFLPRSVVKYHRHPAILCTVXXXXXXXXXXXXXXLGVDVSKTCAPAAETGRVISPGDITDKFTDLELSGTCFLMQSLEFDESPLQRVRAGIPRRLTGSECFSCIDENSPDIVSGCQVRHLEDIQPGQLKVSINTTDGPFKTLTSSFQETTGDQRKFEGCGDLTYNGHEVSTFLFHKLSDKRLWYFEYNDQEQLDIMRKIAPKQKGTPVTNTTKGPVHHFEINCETNALHGDNFSAVIRMYRTVQLENPITPAQLDSKTDLFDPLTPDAIYRAVLAAKIIDDEHDEDVLFYRYTSCGKYKWSFLFPMIICLVIIIALGAASHIFRANGFSSFQVPFNSRSWYDHARNLESVHSPQQEERKRKSGYFGNI-FEELKLVDFGEDTMEHGHVVLSITDDHVPRE 453
            MVTVGVLAALIN+ VL VV+ ADRA+E IVRNFAT RL +H RAPV+HDSDTWLPFLPRSVVK+H++PAILCT+              LG+DV+K C P    G VISP DIT  FTD+ELSG+CF++QS+EF E  L+RV+ GIP  L GSECFSC+  +  DI+SGC VR +++  P  L VS+ TT G FKT+T SF      +  F G GDLT+NG  +S FLF  +  K L Y EY+DQ  +  ++  + KQ    V+  T   V  + I C+TN L   NF+ V+RMYRTVQLENPITPA  +  +  F P++ + IYRA LAAKIIDD+HD +  +Y YTSCG+Y W FL PMII L+ +  L +AS +FR     SF VP+NSRSW+ HA+ L+ +H  +  E   +S    +  F+E+ L++ G        + +   + H   E
Sbjct:    1 MVTVGVLAALINVGVLIVVSFADRAIEHIVRNFATCRLRSHRRAPVIHDSDTWLPFLPRSVVKFHKYPAILCTLFITILLITSEFVSELGIDVNKKCKPQPRKGSVISPDDITHNFTDIELSGSCFVVQSVEFVEGQLKRVQPGIPTELKGSECFSCLQTSHSDIISGCSVRQIQEYAPRTLHVSVKTTRGIFKTVTKSFLHMES-KTPFTGYGDLTFNGENLSCFLFQHIHGKSLNYLEYDDQAHIRSLKDKSEKQYPNEVSEPTNSVVRKYRIRCKTNQLSAANFAEVVRMYRTVQLENPITPAMFNHTSGSFPPMSNEDIYRATLAAKIIDDQHDPNGTYYIYTSCGEYNWIFLLPMIISLLALGVLFSASRVFRPASPQSFPVPYNSRSWFHHAQELQEMHRSRAREEVVQSNLRSSEGFDEVMLIEGGIGARNEYRIAICPRNRHSGNE 453          
BLAST of Ggra3096.t1 vs. uniprot
Match: A0A2V3IMN5 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMN5_9FLOR)

HSP 1 Score: 376 bits (965), Expect = 9.440e-123
Identity = 194/417 (46.52%), Postives = 267/417 (64.03%), Query Frame = 0
Query:    1 MVTVGVLAALINIIVLFVVAIADRALELIVRNFATSRLINHHRAPVVHDSDTWLPFLPRSVVKYHRHPAILCTVXXXXXXXXXXXXXXLGVDVSKTCAPAAETGRVISPGDITDKFTDLELSGTCFLMQSLEFDESPLQRVRAGIPRRLTGSECFSCIDENS-PDIVSGCQVRHLEDIQPGQLKVSINTTDGPFKTLTSSFQETTGD---QRKFEGCGDLTYNGHEVSTFLFHKLSDKR--LWYFEYNDQEQLDIMRKIAPKQKGTPVTNTTKGPVHHFEINCETNALHGDNFSAVIRMYRTVQLENPITPAQLDSKTDLFDPLTPDAIYRAVLAAKIIDDEHDEDVLFYRYTSCGKYKWSFLFPMIICLVIIIALGAASHIFRANGFSSFQVPFNSRSWYDHARNLESVHSPQQEE 411
            M+TVGVLAALIN+ VL ++   DRA+ELI+RNFA++RL +H RAP+VHDSDTWLP+LPRSVVKYHRHPAILC V              LGVDVS+ C+P  E G VI+  + T  FT +EL G  F +QS  F E+P  R++AGIPR +TG EC SC+  +  PDI+SGC V+     Q G+L+V+I TT GPFKT+T+SF ET  +     + +G GDLT NG   ++ +FH   ++   + Y EY +QE +  + + A       VT  T   V  + I+C TN L  D+F   + +YRT+QLENP+ PAQ   K D F  + P+++Y +VL+ KI+DDEH+    +YRYT+CGKYK  F+ P++IC+ +I+ LG  S  FRA+     ++P++SR+W+ H R   S      EE
Sbjct:    1 MITVGVLAALINVAVLILITFTDRAIELILRNFASNRLASHRRAPIVHDSDTWLPYLPRSVVKYHRHPAILCVVIFTILLVPAELITELGVDVSERCSPMKERGPVIAKNNATPNFTSIELGGMAFFLQSTSFAEAPFTRIQAGIPRMITGMECISCLKGSQYPDIISGCTVQLDRVYQAGELRVTIQTTLGPFKTITTSFNETKPNGVAYSRSKGMGDLTRNGEHWASHMFHPRPNRENEVLYLEYTNQEHIGSLFEKAVNSSQALVTEPTGSSVRMYAISCSTNKLSPDHFIEALMVYRTIQLENPVRPAQYQEKEDRFMEINPESVYLSVLSLKIVDDEHEIGD-YYRYTTCGKYKMVFIAPLLICITVIVILGIVSVCFRADRRLRNRIPYSSRTWFQHVRKQGSTDCDPIEE 416          
The following BLAST results are available for this feature:
BLAST of Ggra3096.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IMN62.340e-16153.91Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IPN62.820e-14449.56Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IMN59.440e-12346.52Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 354..377
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 27..68
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 378..477
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..26
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 69..87
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 88..353
NoneNo IPR availableTMHMMTMhelixcoord: 4..21
NoneNo IPR availableTMHMMTMhelixcoord: 354..376

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000120_piloncontigtig00000120_pilon:122823..124337 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3096.t1Ggra3096.t1Gracilaria gracilis GNS1m malemRNAtig00000120_pilon 122823..124337 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra3096.t1 ID=Ggra3096.t1|Name=Ggra3096.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=478bp
MVTVGVLAALINIIVLFVVAIADRALELIVRNFATSRLINHHRAPVVHDS
DTWLPFLPRSVVKYHRHPAILCTVLCTILLIIAELVSELGVDVSKTCAPA
AETGRVISPGDITDKFTDLELSGTCFLMQSLEFDESPLQRVRAGIPRRLT
GSECFSCIDENSPDIVSGCQVRHLEDIQPGQLKVSINTTDGPFKTLTSSF
QETTGDQRKFEGCGDLTYNGHEVSTFLFHKLSDKRLWYFEYNDQEQLDIM
RKIAPKQKGTPVTNTTKGPVHHFEINCETNALHGDNFSAVIRMYRTVQLE
NPITPAQLDSKTDLFDPLTPDAIYRAVLAAKIIDDEHDEDVLFYRYTSCG
KYKWSFLFPMIICLVIIIALGAASHIFRANGFSSFQVPFNSRSWYDHARN
LESVHSPQQEERKRKSGYFGNIFEELKLVDFGEDTMEHGHVVLSITDDHV
PREPSSFIGTGLTNPSTFAVEAFERNP*
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