Ggra3096.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3096.t1
Unique NameGgra3096.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length478
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000120_piloncontigtig00000120_pilon:122823..124337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3096Ggra3096Gracilaria gracilis GNS1m malegenetig00000120_pilon 122823..124337 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3096.t1Ggra3096.t1Gracilaria gracilis GNS1m malepolypeptidetig00000120_pilon 122823..124337 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3096.t1.stop1Ggra3096.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000120_pilon 122823..122825 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3096.t1.CDS1Ggra3096.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000120_pilon 122823..124051 -
Ggra3096.t1.CDS2Ggra3096.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000120_pilon 124133..124337 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3096.t1.exon1Ggra3096.t1.exon1Gracilaria gracilis GNS1m maleexontig00000120_pilon 122823..124051 -
Ggra3096.t1.exon2Ggra3096.t1.exon2Gracilaria gracilis GNS1m maleexontig00000120_pilon 124133..124337 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3096.t1.intron1Ggra3096.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000120_pilon 124052..124132 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3096.t1.start1Ggra3096.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000120_pilon 124335..124337 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3096.t1 ID=Ggra3096.t1|Name=Ggra3096.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=478bp
MVTVGVLAALINIIVLFVVAIADRALELIVRNFATSRLINHHRAPVVHDS
DTWLPFLPRSVVKYHRHPAILCTVLCTILLIIAELVSELGVDVSKTCAPA
AETGRVISPGDITDKFTDLELSGTCFLMQSLEFDESPLQRVRAGIPRRLT
GSECFSCIDENSPDIVSGCQVRHLEDIQPGQLKVSINTTDGPFKTLTSSF
QETTGDQRKFEGCGDLTYNGHEVSTFLFHKLSDKRLWYFEYNDQEQLDIM
RKIAPKQKGTPVTNTTKGPVHHFEINCETNALHGDNFSAVIRMYRTVQLE
NPITPAQLDSKTDLFDPLTPDAIYRAVLAAKIIDDEHDEDVLFYRYTSCG
KYKWSFLFPMIICLVIIIALGAASHIFRANGFSSFQVPFNSRSWYDHARN
LESVHSPQQEERKRKSGYFGNIFEELKLVDFGEDTMEHGHVVLSITDDHV
PREPSSFIGTGLTNPSTFAVEAFERNP*
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spliced messenger RNA

>Ggra3096.t1 ID=Ggra3096.t1|Name=Ggra3096.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1434bp|location=Sequence derived from alignment at tig00000120_pilon:122823..124337- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTACAGTTGGTGTTCTGGCCGCTTTGATCAACATAATAGTGTTGTT
TGTCGTTGCGATTGCTGACCGAGCCCTTGAGCTCATTGTTCGAAATTTTG
CTACTTCTCGTCTCATCAACCACCACAGAGCGCCGGTAGTCCATGACAGT
GACACATGGCTACCATTTCTACCTCGTTCGGTGGTGAAGTATCACAGACA
TCCAGCTATTCTCTGCACTGTTCTGTGTACCATACTGCTCATCATCGCCG
AGCTGGTCTCTGAACTGGGGGTAGACGTGTCAAAGACATGCGCACCGGCT
GCTGAGACAGGCAGAGTCATATCACCAGGTGATATTACGGACAAATTCAC
AGACCTTGAGCTCAGCGGCACCTGTTTTCTGATGCAAAGCCTGGAATTCG
ACGAAAGTCCACTTCAAAGAGTCCGTGCTGGCATTCCTCGCCGATTGACT
GGTAGCGAGTGTTTCAGTTGTATTGACGAGAACAGCCCAGACATCGTAAG
TGGTTGTCAAGTACGCCACCTCGAAGACATCCAGCCTGGACAGCTGAAGG
TTTCGATCAACACCACTGACGGGCCTTTCAAAACGCTCACCTCATCTTTC
CAAGAAACAACTGGTGACCAAAGAAAGTTTGAGGGCTGCGGTGACTTGAC
ATATAACGGACATGAGGTCTCGACGTTTCTTTTTCACAAATTGTCCGACA
AGCGCCTTTGGTACTTTGAGTACAACGACCAAGAGCAACTCGACATCATG
AGAAAGATCGCTCCCAAACAGAAAGGAACGCCAGTCACAAATACTACGAA
AGGTCCAGTCCATCACTTCGAAATCAATTGTGAAACAAACGCTTTGCACG
GCGACAACTTCTCCGCAGTTATCAGGATGTATCGAACAGTGCAGCTGGAG
AATCCCATCACGCCTGCCCAGCTAGACTCCAAAACGGATCTATTTGACCC
CCTCACTCCGGATGCCATTTACCGGGCCGTTCTAGCTGCCAAGATTATTG
ACGATGAACACGATGAAGACGTCCTCTTCTACAGGTACACCTCGTGTGGA
AAGTACAAGTGGAGTTTCTTGTTCCCGATGATCATCTGCTTGGTCATAAT
TATTGCGCTCGGTGCCGCCTCTCATATATTTCGAGCCAATGGGTTCTCAT
CTTTCCAAGTACCGTTCAATTCACGTTCTTGGTATGACCACGCTCGCAAC
CTTGAATCTGTGCATTCACCACAGCAAGAAGAAAGAAAACGAAAGAGTGG
ATATTTCGGTAACATCTTCGAGGAGCTGAAACTCGTAGATTTCGGTGAGG
ACACCATGGAACATGGACATGTAGTTCTGTCGATCACAGATGACCATGTG
CCTCGTGAGCCCTCAAGCTTCATCGGTACGGGTCTAACGAATCCATCAAC
ATTTGCTGTTGAGGCATTCGAGAGAAACCCATGA
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protein sequence of Ggra3096.t1

>Ggra3096.t1 ID=Ggra3096.t1|Name=Ggra3096.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=478bp
MVTVGVLAALINIIVLFVVAIADRALELIVRNFATSRLINHHRAPVVHDS
DTWLPFLPRSVVKYHRHPAILCTVLCTILLIIAELVSELGVDVSKTCAPA
AETGRVISPGDITDKFTDLELSGTCFLMQSLEFDESPLQRVRAGIPRRLT
GSECFSCIDENSPDIVSGCQVRHLEDIQPGQLKVSINTTDGPFKTLTSSF
QETTGDQRKFEGCGDLTYNGHEVSTFLFHKLSDKRLWYFEYNDQEQLDIM
RKIAPKQKGTPVTNTTKGPVHHFEINCETNALHGDNFSAVIRMYRTVQLE
NPITPAQLDSKTDLFDPLTPDAIYRAVLAAKIIDDEHDEDVLFYRYTSCG
KYKWSFLFPMIICLVIIIALGAASHIFRANGFSSFQVPFNSRSWYDHARN
LESVHSPQQEERKRKSGYFGNIFEELKLVDFGEDTMEHGHVVLSITDDHV
PREPSSFIGTGLTNPSTFAVEAFERNP*
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mRNA from alignment at tig00000120_pilon:122823..124337-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3096.t1 ID=Ggra3096.t1|Name=Ggra3096.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1515bp|location=Sequence derived from alignment at tig00000120_pilon:122823..124337- (Gracilaria gracilis GNS1m male)
ATGGTTACAGTTGGTGTTCTGGCCGCTTTGATCAACATAATAGTGTTGTT
TGTCGTTGCGATTGCTGACCGAGCCCTTGAGCTCATTGTTCGAAATTTTG
CTACTTCTCGTCTCATCAACCACCACAGAGCGCCGGTAGTCCATGACAGT
GACACATGGCTACCATTTCTACCTCGTTCGGTGGTGAAGTATCACAGACA
TCCAGGTGCGTAAAAGTTGCCTGTCCTTCCCGTCCTTTCCTTCACACTCA
GTCTTCCTCTTCTAACTCTCGCCTTTTGTCCCACAGCTATTCTCTGCACT
GTTCTGTGTACCATACTGCTCATCATCGCCGAGCTGGTCTCTGAACTGGG
GGTAGACGTGTCAAAGACATGCGCACCGGCTGCTGAGACAGGCAGAGTCA
TATCACCAGGTGATATTACGGACAAATTCACAGACCTTGAGCTCAGCGGC
ACCTGTTTTCTGATGCAAAGCCTGGAATTCGACGAAAGTCCACTTCAAAG
AGTCCGTGCTGGCATTCCTCGCCGATTGACTGGTAGCGAGTGTTTCAGTT
GTATTGACGAGAACAGCCCAGACATCGTAAGTGGTTGTCAAGTACGCCAC
CTCGAAGACATCCAGCCTGGACAGCTGAAGGTTTCGATCAACACCACTGA
CGGGCCTTTCAAAACGCTCACCTCATCTTTCCAAGAAACAACTGGTGACC
AAAGAAAGTTTGAGGGCTGCGGTGACTTGACATATAACGGACATGAGGTC
TCGACGTTTCTTTTTCACAAATTGTCCGACAAGCGCCTTTGGTACTTTGA
GTACAACGACCAAGAGCAACTCGACATCATGAGAAAGATCGCTCCCAAAC
AGAAAGGAACGCCAGTCACAAATACTACGAAAGGTCCAGTCCATCACTTC
GAAATCAATTGTGAAACAAACGCTTTGCACGGCGACAACTTCTCCGCAGT
TATCAGGATGTATCGAACAGTGCAGCTGGAGAATCCCATCACGCCTGCCC
AGCTAGACTCCAAAACGGATCTATTTGACCCCCTCACTCCGGATGCCATT
TACCGGGCCGTTCTAGCTGCCAAGATTATTGACGATGAACACGATGAAGA
CGTCCTCTTCTACAGGTACACCTCGTGTGGAAAGTACAAGTGGAGTTTCT
TGTTCCCGATGATCATCTGCTTGGTCATAATTATTGCGCTCGGTGCCGCC
TCTCATATATTTCGAGCCAATGGGTTCTCATCTTTCCAAGTACCGTTCAA
TTCACGTTCTTGGTATGACCACGCTCGCAACCTTGAATCTGTGCATTCAC
CACAGCAAGAAGAAAGAAAACGAAAGAGTGGATATTTCGGTAACATCTTC
GAGGAGCTGAAACTCGTAGATTTCGGTGAGGACACCATGGAACATGGACA
TGTAGTTCTGTCGATCACAGATGACCATGTGCCTCGTGAGCCCTCAAGCT
TCATCGGTACGGGTCTAACGAATCCATCAACATTTGCTGTTGAGGCATTC
GAGAGAAACCCATGA
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Coding sequence (CDS) from alignment at tig00000120_pilon:122823..124337-

>Ggra3096.t1 ID=Ggra3096.t1|Name=Ggra3096.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1434bp|location=Sequence derived from alignment at tig00000120_pilon:122823..124337- (Gracilaria gracilis GNS1m male)
ATGGTTACAGTTGGTGTTCTGGCCGCTTTGATCAACATAATAGTGTTGTT
TGTCGTTGCGATTGCTGACCGAGCCCTTGAGCTCATTGTTCGAAATTTTG
CTACTTCTCGTCTCATCAACCACCACAGAGCGCCGGTAGTCCATGACAGT
GACACATGGCTACCATTTCTACCTCGTTCGGTGGTGAAGTATCACAGACA
TCCAGCTATTCTCTGCACTGTTCTGTGTACCATACTGCTCATCATCGCCG
AGCTGGTCTCTGAACTGGGGGTAGACGTGTCAAAGACATGCGCACCGGCT
GCTGAGACAGGCAGAGTCATATCACCAGGTGATATTACGGACAAATTCAC
AGACCTTGAGCTCAGCGGCACCTGTTTTCTGATGCAAAGCCTGGAATTCG
ACGAAAGTCCACTTCAAAGAGTCCGTGCTGGCATTCCTCGCCGATTGACT
GGTAGCGAGTGTTTCAGTTGTATTGACGAGAACAGCCCAGACATCGTAAG
TGGTTGTCAAGTACGCCACCTCGAAGACATCCAGCCTGGACAGCTGAAGG
TTTCGATCAACACCACTGACGGGCCTTTCAAAACGCTCACCTCATCTTTC
CAAGAAACAACTGGTGACCAAAGAAAGTTTGAGGGCTGCGGTGACTTGAC
ATATAACGGACATGAGGTCTCGACGTTTCTTTTTCACAAATTGTCCGACA
AGCGCCTTTGGTACTTTGAGTACAACGACCAAGAGCAACTCGACATCATG
AGAAAGATCGCTCCCAAACAGAAAGGAACGCCAGTCACAAATACTACGAA
AGGTCCAGTCCATCACTTCGAAATCAATTGTGAAACAAACGCTTTGCACG
GCGACAACTTCTCCGCAGTTATCAGGATGTATCGAACAGTGCAGCTGGAG
AATCCCATCACGCCTGCCCAGCTAGACTCCAAAACGGATCTATTTGACCC
CCTCACTCCGGATGCCATTTACCGGGCCGTTCTAGCTGCCAAGATTATTG
ACGATGAACACGATGAAGACGTCCTCTTCTACAGGTACACCTCGTGTGGA
AAGTACAAGTGGAGTTTCTTGTTCCCGATGATCATCTGCTTGGTCATAAT
TATTGCGCTCGGTGCCGCCTCTCATATATTTCGAGCCAATGGGTTCTCAT
CTTTCCAAGTACCGTTCAATTCACGTTCTTGGTATGACCACGCTCGCAAC
CTTGAATCTGTGCATTCACCACAGCAAGAAGAAAGAAAACGAAAGAGTGG
ATATTTCGGTAACATCTTCGAGGAGCTGAAACTCGTAGATTTCGGTGAGG
ACACCATGGAACATGGACATGTAGTTCTGTCGATCACAGATGACCATGTG
CCTCGTGAGCCCTCAAGCTTCATCGGTACGGGTCTAACGAATCCATCAAC
ATTTGCTGTTGAGGCATTCGAGAGAAACCCATGA
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